Export 554 results:
Author Title Type [ Year(Desc)]
2015
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Purkanti R, Thattai M.  2015.  Ancient dynamin segments capture early stages of host-mitochondrial integration.. Proc Natl Acad Sci U S A. 112(9):2800-5.
Shivaprasad PV, Hohn T, Akbergenov R.  2015.  Biochemical requirements for two Dicer-like activities from wheat germ.. PLoS One. 10(1):e0116736.
Deora T, Singh AKumar, Sane SP.  2015.  Biomechanical basis of wing and haltere coordination in flies.. Proc Natl Acad Sci U S A. 112(5):1481-6.
Johannes L, Parton RG, Bassereau P, Mayor S.  2015.  Building endocytic pits without clathrin.. Nat Rev Mol Cell Biol. 16(5):311-21.
Gilra A, Bhalla US.  2015.  Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding.. PLoS One. 10(5):e0098045.
Kunte K, Roy P, Kalesh S., Kodandaramaia U.  2015.  Butterflies of India. Indian Foundation for Butterflies. 2(10)
Mukherjee O, Das G, Sen S, Dutt A, Alladi S, Ghosh A.  2015.  C9orf72 mutations may be rare in frontotemporal lobar degeneration patients in India.. Amyotroph Lateral Scler Frontotemporal Degener. :1-3.
Viswanath B, Jose SP, Squassina A, Thirthalli J, Purushottam M, Mukherjee O, Vladimirov V, Patrinos GP, Del Zompo M, Jain S.  2015.  Cellular models to study bipolar disorder: A systematic review.. J Affect Disord. 184:36-50.
Winata CLanny, Kondrychyn I, Korzh V.  2015.  Changing Faces of Transcriptional Regulation Reflected by Zic3.. Curr Genomics. 16(2):117-27.
Mak S-S, Alev C, Nagai H, Wrabel A, Matsuoka Y, Honda A, Sheng G, Ladher RK.  2015.  Characterization of the finch embryo supports evolutionary conservation of the naive stage of development in amniotes.. Elife. 4:e07178.
Malhotra S, Sowdhamini R.  2015.  Collation and analyses of DNA-binding protein domain families from sequence and structural databanks.. Mol Biosyst. 11(4):1110-8.
Scolari VF, Lagomarsino MCosentino.  2015.  Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.. Soft Matter. 11(9):1677-87.
Varudkar A, Ramakrishnan U.  2015.  Commensalism facilitates gene flow in mountains: a comparison between two Rattus species.. Heredity (Edinb). 115(3):253-61.
Toussaint EFA, Morinière J, Müller CJ, Kunte K, Turlin B, Hausmann A, Balke M.  2015.  Comparative molecular species delimitation in the charismatic Nawab butterflies (Nymphalidae, Charaxinae, Polyura).. Mol Phylogenet Evol. 91:194-209.
Harini K, Sowdhamini R.  2015.  Computational Approaches for Decoding Select Odorant-Olfactory Receptor Interactions Using Mini-Virtual Screening.. PLoS One. 10(7):e0131077.
Till SM, Asiminas A, Jackson AD, Katsanevaki D, Barnes SA, Osterweil EK, Bear MF, Chattarji S, Wood ER, Wyllie DJA et al..  2015.  Conserved hippocampal cellular pathophysiology but distinct behavioural deficits in a new rat model of FXS.. Hum Mol Genet. 24(21):5977-84.
Hinsen K, Vaitinadapoule A, Ostuni MA, Etchebest C, Lacapere J-J.  2015.  Construction and validation of an atomic model for bacterial TSPO from electron microscopy density, evolutionary constraints, and biochemical and biophysical data.. Biochim Biophys Acta. 1848(2):568-80.
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJinan, Craik DJ, Finn RD, Gloriam D, Haft DH et al..  2015.  Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.. Database (Oxford). 2015:bav063.
Savory FR, Ramakrishnan U.  2015.  Cryptic diversity and habitat partitioning in an economically important aphid species complex.. Infect Genet Evol. 30:230-7.
Ramdas NM, Shivashankar GV.  2015.  Cytoskeletal control of nuclear morphology and chromatin organization.. J Mol Biol. 427(3):695-706.
Robin VV, Vishnudas CK, Gupta P, Ramakrishnan U.  2015.  Deep and wide valleys drive nested phylogeographic patterns across a montane bird community.. Proc Biol Sci. 282(1810)
Halder S, Krishnan Y.  2015.  Design of ultrasensitive DNA-based fluorescent pH sensitive nanodevices.. Nanoscale. 7(22):10008-12.
Surana S, Shenoy AR, Krishnan Y.  2015.  Designing DNA nanodevices for compatibility with the immune system of higher organisms.. Nat Nanotechnol. 10(9):741-7.
Karnawat V, Gogia S, Balaram H, Puranik M.  2015.  Differential Distortion of Purine Substrates by Human and Plasmodium falciparum Hypoxanthine-Guanine Phosphoribosyltransferase to Catalyse the Formation of Mononucleotides.. Chemphyschem. 16(10):2172-81.
Saha S, Lee I-H, Polley A, Groves JT, Rao M, Mayor S.  2015.  Diffusion of GPI-anchored proteins is influenced by the activity of dynamic cortical actin.. Mol Biol Cell. 26(22):4033-45.
Malhotra S, Mathew OK, Sowdhamini R.  2015.  DOCKSCORE: a webserver for ranking protein-protein docked poses.. BMC Bioinformatics. 16:127.
Chakrabarti P, Kolay S, Yadav S, Kumari K, Nair A, Trivedi D, Raghu P.  2015.  A dPIP5K dependent pool of phosphatidylinositol 4,5 bisphosphate (PIP2) is required for G-protein coupled signal transduction in Drosophila photoreceptors.. PLoS Genet. 11(1):e1004948.
Tomar A, Polygalov D, Chattarji S, McHugh TJ.  2015.  The dynamic impact of repeated stress on the hippocampal spatial map.. Hippocampus. 25(1):38-50.
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Marthews T.R, Nelaballi S., Ratnam J., Sankaran M..  2015.  Ecosystem monitoring and forest census studies in South Asia (Meeting Report). Current Science. 180:1779–1782.
Sreekar R, Srinivasan U, Mammides C, Chen J, Goodale UManage, Kotagama SWimalaband, Sidhu S, Goodale E.  2015.  The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India.. Sci Rep. 5:11569.
Hansen S, Krishna S, Semsey S, Svenningsen SLo.  2015.  Effects of Four Different Regulatory Mechanisms on the Dynamics of Gene Regulatory Cascades.. Sci Rep. 5:12186.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Ramakrishnan G, Ochoa-Montaño B, Raghavender US, Mudgal R, Joshi AG, Chandra NR, Sowdhamini R, Blundell TL, Srinivasan N.  2015.  Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: insights into structure and function.. Tuberculosis (Edinb). 95(1):14-25.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Godbole A, Dubey AK, Mitra R, Reddy PS, Mathew MK.  2015.  Expression and purification of OsVDAC4.. Methods Enzymol. 556:51-75.
Banerjee A, Grazon C, Nadal B, Pons T, Krishnan Y, Dubertret B.  2015.  Fast, Efficient, and Stable Conjugation of Multiple DNA Strands on Colloidal Quantum Dots.. Bioconjug Chem. 26(8):1582-9.
Weinert T, Olieric V, Waltersperger S, Panepucci E, Chen L, Zhang H, Zhou D, Rose J, Ebihara A, Kuramitsu S et al..  2015.  Fast native-SAD phasing for routine macromolecular structure determination.. Nat Methods. 12(2):131-3.
Milán-Garcés EA, Thaore P, Udgaonkar JB, Puranik M.  2015.  Formation of a CH-π contact in the core of native barstar during folding.. J Phys Chem B. 119(7):2928-32.
G KP, Kuruvilla S, Mathew MK.  2015.  Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).. Plant Physiol Biochem. 97:165-74.
Mullin AP, Sadanandappa MK, Ma W, Dickman DK, VijayRaghavan K, Ramaswami M, Sanyal S, Faundez V.  2015.  Gene dosage in the dysbindin schizophrenia susceptibility network differentially affect synaptic function and plasticity.. J Neurosci. 35(1):325-38.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..  2015.  Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.  2015.  The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.
Tamma K, Ramakrishnan U.  2015.  Higher speciation and lower extinction rates influence mammal diversity gradients in Asia.. BMC Evol Biol. 15:11.
Saha S, Raghupathy R, Mayor S.  2015.  Homo-FRET imaging highlights the nanoscale organization of cell surface molecules.. Methods Mol Biol. 1251:151-73.
Banerjee A, Marbach F, Anselmi F, Koh MS, Davis MB, da Silva PGarcia, Delevich K, Oyibo HK, Gupta P, Li B et al..  2015.  An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb.. Neuron. 87(1):193-207.
Robin VV, Gupta P, Thatte P, Ramakrishnan U.  2015.  Islands within islands: two montane palaeo-endemic birds impacted by recent anthropogenic fragmentation.. Mol Ecol. 24(14):3572-84.
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N et al..  2015.  Key challenges for the creation and maintenance of specialist protein resources.. Proteins. 83(6):1005-13.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2015.  Landscape scale habitat suitability modelling of bats in the Western Ghats of India: Bats like something in their tea. Biological Conservation. 191:529–536.
Lee I-H, Saha S, Polley A, Huang H, Mayor S, Rao M, Groves JT.  2015.  Live cell plasma membranes do not exhibit a miscibility phase transition over a wide range of temperatures.. J Phys Chem B. 119(12):4450-9.
Garg KM, Chattopadhyay B, Doss DPSwami, Kumar AKVinoth, Kandula S, Ramakrishnan U.  2015.  Males and females gain differentially from sociality in a promiscuous fruit bat Cynopterus sphinx.. PLoS One. 10(3):e0122180.
Agrawal T, Hasan G.  2015.  Maturation of a central brain flight circuit in Drosophila requires Fz2/Ca²⁺ signaling.. Elife. 4
Raghavender US, Sowdhamini R.  2015.  Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DSelvi, Mukundan N, Jambekar A, Thangaraj K et al..  2015.  Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies.. J Biol Chem. 290(11):7003-15.
Gupte TM.  2015.  Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals.. PLoS One. 10(5):e0126829.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Chattarji S, Tomar A, Suvrathan A, Ghosh S, Rahman MMostafizur.  2015.  Neighborhood matters: divergent patterns of stress-induced plasticity across the brain.. Nat Neurosci. 18(10):1364-75.
Sadaf S, O Reddy V, Sane SP, Hasan G.  2015.  Neural control of wing coordination in flies.. Curr Biol. 25(1):80-6.
Ghosh S, Chattarji S.  2015.  Neuronal encoding of the switch from specific to generalized fear.. Nat Neurosci. 18(1):112-20.
Kiran C.G, Kalesh S., Kunte K.  2015.  A new species of damselfly, Protosticta ponmudiensis (Odonata: Zygoptera: Platystictidae) from Ponmudi Hills in the Western Ghats of India. Journal of Threatened Taxa. 7(5):7146-7151.
Kunte K.  2015.  A new species of Hypolycaena (Lepidoptera: Lycenidae) from Arunachal Pradesh, north-eastern India. The Journal of Research on the Lepidoptera. 48:21-27.
Krishnaswamy J., Vaidyanathan S., Rajagopalan B., Bonell M., Sankaran M., Bhalla R.S, Badiger S..  2015.  Non‑stationary and non‑linear influence of ENSO and Indian Ocean Dipole on the variability of Indian monsoon rainfall and extreme rain events. Climate Dynamics. 45:175-184..
Naik S, MacFarlane M, Sarin A.  2015.  Notch4 Signaling Confers Susceptibility to TRAIL-Induced Apoptosis in Breast Cancer Cells.. J Cell Biochem. 116(7):1371-80.
Mudgal R, Sandhya S, Kumar G, Sowdhamini R, Chandra NR, Srinivasan N.  2015.  NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.. Nucleic Acids Res. 43(Database issue):D300-5.
Gupta P, Albeanu DF, Bhalla US.  2015.  Olfactory bulb coding of odors, mixtures and sniffs is a linear sum of odor time profiles.. Nat Neurosci. 18(2):272-81.
Parchure A, Vyas N, Ferguson C, Parton RG, Mayor S.  2015.  Oligomerization and endocytosis of Hedgehog is necessary for its efficient exovesicular secretion.. Mol Biol Cell. 26(25):4700-17.
Ramakrishnan N, Ipsen JH, Rao M, Kumar PBSunil.  2015.  Organelle morphogenesis by active membrane remodeling.. Soft Matter. 11(12):2387-93.
Moulick R, Das R, Udgaonkar JB.  2015.  Partially Unfolded Forms of the Prion Protein Populated under Misfolding-promoting Conditions: CHARACTERIZATION BY HYDROGEN EXCHANGE MASS SPECTROMETRY AND NMR.. J Biol Chem. 290(42):25227-40.
Varma V., Ratnam J., Viswanathan V., Osuri A.M, Biesmeijer J.C, Madhusudan M.D, Sankaran M..  2015.  Perceptions of priority issues in the conservation of biodiversity and ecosystems in India. Biological Conservation . 187:201-211.
Saha S, Prakash V, Halder S, Chakraborty K, Krishnan Y.  2015.  A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells.. Nat Nanotechnol. 10(7):645-51.
Balakrishnan SS, Basu U, Raghu P.  2015.  Phosphoinositide signalling in Drosophila.. Biochim Biophys Acta. 1851(6):770-84.
Kosmalska AJoanna, Casares L, Elosegui-Artola A, Thottacherry JJose, Moreno-Vicente R, González-Tarragó V, del Pozo MÁngel, Mayor S, Arroyo M, Navajas D et al..  2015.  Physical principles of membrane remodelling during cell mechanoadaptation.. Nat Commun. 6:7292.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Sukhwal A, Sowdhamini R.  2015.  PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.. Bioinform Biol Insights. 9:141-51.
Su S, Lim M, Kunte K.  2015.  Prey from the eyes of predators: Color discriminability of aposematic and mimetic butterflies from an avian visual perspective.. Evolution. 69(11):2985-94.
Das T, Ganguly S, Sengupta S, Rao M.  2015.  Pre-yield non-affine fluctuations and a hidden critical point in strained crystals.. Sci Rep. 5:10644.
Broom A, Gosavi S, Meiering EM.  2015.  Protein unfolding rates correlate as strongly as folding rates with native structure.. Protein Sci. 24(4):580-7.
Chakraborty D, Ramakrishnan U, Sinha A.  2015.  Quaternary climate change and social behavior shaped the genetic differentiation of an endangered montane primate from the southern edge of the Tibetan Plateau.. Am J Primatol. 77(3):271-84.
Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P.  2015.  RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.. J Cell Sci. 128(17):3330-44.
Sneppen K, Semsey S, Seshasayee ASN, Krishna S.  2015.  Restriction modification systems as engines of diversity.. Front Microbiol. 6:528.
Goluguri RReddy, Udgaonkar JB.  2015.  Rise of the Helix from a Collapsed Globule during the Folding of Monellin.. Biochemistry. 54(34):5356-65.
Bhattacharyya U, Bhalla USingh.  2015.  Robust and Rapid Air-Borne Odor Tracking without Casting(1,2,3).. eNeuro. 2(6)
Bendtsen KMoss, Jensen MH, Krishna S, Semsey S.  2015.  The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells.. Sci Rep. 5:13910.
Baral A, Irani NG, Fujimoto M, Nakano A, Mayor S, Mathew MK.  2015.  Salt-induced remodeling of spatially restricted clathrin-independent endocytic pathways in Arabidopsis root.. Plant Cell. 27(4):1297-315.
Ramesh A.  2015.  Second messenger - Sensing riboswitches in bacteria.. Semin Cell Dev Biol. 47-48:3-8.
Manoharan M, Muhammad SAuwn, Sowdhamini R.  2015.  Sequence Analysis and Evolutionary Studies of Reelin Proteins.. Bioinform Biol Insights. 9:187-93.
Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-Montaño B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL et al..  2015.  SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.. Database (Oxford). 2015:bav060.
Panas D, Amin H, Maccione A, Muthmann O, van Rossum M, Berdondini L, Hennig MH.  2015.  Sloppiness in spontaneously active neuronal networks.. J Neurosci. 35(22):8480-92.
Muthmann J-O, Amin H, Sernagor E, Maccione A, Panas D, Berdondini L, Bhalla US, Hennig MH.  2015.  Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays.. Front Neuroinform. 9:28.
Pathak T, Agrawal T, Richhariya S, Sadaf S, Hasan G.  2015.  Store-Operated Calcium Entry through Orai Is Required for Transcriptional Maturation of the Flight Circuit in Drosophila.. J Neurosci. 35(40):13784-99.
Singh J, Udgaonkar JB.  2015.  Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Rao VVHemanth, Gosavi S.  2015.  Structural Perturbations Present in the Folding Cores of Interleukin-33 and Interleukin-1β Correlate to Differences in Their Function.. J Phys Chem B. 119(34):11203-14.
Dhanyasi N, Segal D, Shimoni E, Shinder V, Shilo B-Z, VijayRaghavan K, Schejter ED.  2015.  Surface apposition and multiple cell contacts promote myoblast fusion in Drosophila flight muscles.. J Cell Biol. 211(1):191-203.
Dinesh KP, Vijayakumar SP, Channakeshavamurthy BH, Torsekar VR, Kulkarni NU, Shanker K.  2015.  Systematic status of Fejervarya ((Amphibia, Anura, Dicroglossidae) from South and SE Asia with the description of a new species from the Western Ghats of Peninsular India.. Zootaxa. 3999(1):79-94.
Shrivastava R, Köster D, Kalme S, Mayor S, Neerathilingam M.  2015.  Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro.. PLoS One. 10(4):e0123428.
Mondol S, Sridhar V, Yadav P, Gubbi S, Ramakrishnan U.  2015.  Tracing the geographic origin of traded leopard body parts in the indian subcontinent with DNA-based assignment tests.. Conserv Biol. 29(2):556-64.

Pages