Author [ Title(Desc)] Type Year
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
Tiwari V, Karpe SD, Sowdhamini R.  2019.  Topology prediction of insect olfactory receptors.. Curr Opin Struct Biol. 55:194-203.
Kalappurakkal JMathew, Sil P, Mayor S.  2020.  Toward a new picture of the living plasma membrane.. Protein Sci. 29(6):1355-1365.
Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ESandro, Cusseddu D, Desai MM et al..  2023.  Towards evolutionary predictions: Current promises and challenges.. Evol Appl. 16(1):3-21.
Subaharan K, Senthoorraja R, Manjunath S, Thimmegowda GG, Pragadheesh VS, Bakthavatsalam N, Mohan MG, Senthil-Nathan S, David KJ, Basavarajappa S et al..  2021.  Toxicity, behavioural and biochemical effect of Piper betle L. essential oil and its constituents against housefly, Musca domestica L.. Pestic Biochem Physiol. 174(104804)
Mondol S, Sridhar V, Yadav P, Gubbi S, Ramakrishnan U.  2015.  Tracing the geographic origin of traded leopard body parts in the indian subcontinent with DNA-based assignment tests.. Conserv Biol. 29(2):556-64.
Raghunathan S, Badrinarayanan A.  2019.  Tracking Bacterial Chromosome Dynamics with Microfluidics-Based Live Cell Imaging.. Methods Mol Biol. 2004:223-238.
Mondal S, Dubey J, Awasthi A, Sure GReddy, Vasudevan A, Koushika SP.  2021.  Tracking mitochondrial density and positioning along a growing neuronal process in individual neuron using a long-term growth and imaging microfluidic device.. eNeuro.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
Joshi J, Edgecombe GD.  2017.  Tracking the variability of phenotypic traits on a molecular phylogeny: an example from scolopendrid centipedes in peninsular India. Organisms Diversity & Evolution. 17(2):393–408.
Raghupathy R, Anilkumar AAmbika, Polley A, Singh PPal, Yadav M, Johnson C, Suryawanshi S, Saikam V, Sawant SD, Panda A et al..  2015.  Transbilayer lipid interactions mediate nanoclustering of lipid-anchored proteins.. Cell. 161(3):581-94.
Mann R, Notani D.  2023.  Transcription factor condensates and signaling driven transcription.. Nucleus. 14(1):2205758.
Aloysius A, DasGupta R, Dhawan J.  2018.  The transcription factor Lef1 switches partners from β-catenin to Smad3 during muscle stem cell quiescence.. Sci Signal. 11(540)
Kondrychyn I, Robra L, Thirumalai V.  2017.  Transcriptional Complexity and Distinct Expression Patterns of auts2 Paralogs in Danio rerio.. G3 (Bethesda).
Louis LK, Gopurappilly R, Surendran H, Dutta S, Pal R.  2018.  Transcriptional profiling of human neural precursors post alcohol exposure reveals impaired neurogenesis via dysregulation of ERK signaling and miR-145.. J Neurochem. 146(1):47-62.
Farooq U, Notani D.  2022.  Transcriptional regulation of INK4/ARF locus by cis and trans mechanisms.. Front Cell Dev Biol. 10:948351.
Barah P, N MNaika B, Jayavelu NDoni, Sowdhamini R, Shameer K, Bones AM.  2016.  Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.. Nucleic Acids Res. 44(7):3147-64.
Singh A, Kandi AReddy, Jayaprakashappa D, Thuery G, Purohit DJ, Huelsmeier J, Singh R, Pothapragada SShruti, Ramaswami M, Bakthavachalu B.  2022.  The Transcriptional Response to Oxidative Stress is Independent of Stress-Granule Formation.. Mol Biol Cell. :mbcE21080418.
Chauhan PKumar, Sowdhamini R.  2023.  Transcriptome data analysis of primary cardiomyopathies reveals perturbations in arachidonic acid metabolism.. Front Cardiovasc Med. 10:1110119.
Pasha SNaseer, K Shafi M, Joshi AG, Meenakshi I, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).. Genomics. 112(1):621-628.
K Shafi M, Sajeevan RSivarajan, Kouser S, Vishnuprasad CN, Sowdhamini R.  2022.  Transcriptome profiling of two Moringa species and insights into their antihyperglycemic activity.. BMC Plant Biol. 22(1):561.
Kalmankar NV, Venkatesan R, Balaram P, Sowdhamini R.  2020.  Transcriptomic profiling of the medicinal plant Clitoria ternatea: identification of potential genes in cyclotide biosynthesis.. Sci Rep. 10(1):12658.
Mahajan S, Agashe D.  2018.  Translational selection for speed is not sufficient to explain variation in bacterial codon usage bias.. Genome Biol Evol.
Freeman SA, Vega A, Riedl M, Collins RF, Ostrowski PP, Woods EC, Bertozzi CR, Tammi MI, Lidke DS, Johnson P et al..  2018.  Transmembrane Pickets Connect Cyto- and Pericellular Skeletons Forming Barriers to Receptor Engagement.. Cell. 172(1-2):305-317.e10.
Osuri A.M, Machado S, Ratnam J., Sankaran M., Ayyappan N, Muthuramkumar S, Parthasarathy N, Pélissier R, Ramesh BR, DeFries R et al..  2020.  Tree diversity and carbon storage cobenefits in tropical human‐dominated landscapes. Conservation Letters.
Thatte P, Tyagi A, Neelakantan A, Natesh M, Sen M, Thekaekara T.  2021.  Trends in Wildlife Connectivity Science from the Biodiverse and Human-Dominated South Asia. JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE.
Chakrabarti A, Kaushik M, Khan J, Soota D, Ponnusamy K, Saini S, Manvati S, Singhal J, Ranganathan A, Pati S et al..  2022.  tREPs-A New Class of Functional tRNA-Encoded Peptides.. ACS Omega. 7(22):18361-18373.
Syiem BL, Driscoll DA, Vasudev D, Goswami VR.  2023.  Tropical agricultural wooded land uses support high site use of forest birds. Biological Conservation. 281:109986.
K BKumar A, George EAntony, Brockmann A.  2024.  Tropical and montane Apis cerana show distinct dance-distance calibration curves.. J Exp Biol.
Nazareth O, Srivathsa A, Ramachandran V.  2023.  Trunks and treetops: integrating terrestrial and arboreal camera-trap surveys to document elusive mammal communities in India. MAMMAL RESEARCH.
Srivathsa A, Rodrigues RG, Ben Toh K, Zachariah A, Taylor RW, Oli MK, Ramakrishnan U.  2021.  The truth about scats and dogs: Next-generation sequencing and spatial capture-recapture models offer opportunities for conservation monitoring of an endangered social canid. BIOLOGICAL CONSERVATION. (109028)
Raja SO, Sivaraman G, Biswas S, Singh G, Kalim F, Kandaswamy P, Gulyani A.  2021.  A Tunable Palette of Molecular Rotors Allows Multicolor, Ratiometric Fluorescence Imaging and Direct Mapping of Mitochondrial Heterogeneity.. ACS Appl Bio Mater. 4(5):4361-4372.
Natesan D, Saxena N, Ekeberg Ö, Sane SP.  2019.  Tuneable reflexes control antennal positioning in flying hawkmoths.. Nat Commun. 10(1):5593.
Malhotra P, Udgaonkar JB.  2015.  Tuning Cooperativity on the Free Energy Landscape of Protein Folding.. Biochemistry. 54(22):3431-41.
Lannes L, Halder S, Krishnan Y, Schwalbe H.  2015.  Tuning the pH Response of i-Motif DNA Oligonucleotides.. Chembiochem. 16(11):1647-56.
Khot M, Sreekumar D, Jahagirdar S, Kulkarni A, Hari K, Faseela EEbrahimkut, Sabarinathan R, Jolly MKumar, Sengupta K.  2020.  Twist1 induces chromosomal instability (CIN) in colorectal cancer cells.. Hum Mol Genet. 29(10):1673-1688.
Agarwal I, Bauer AM, Pal S, Srikanthan AN, Khandekar A.  2020.  Two more new Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from Tamil Nadu, India.. Zootaxa. 4729(2):zootaxa.4729.2.6.
Khandekar A, Thackeray T, Agarwal I.  2019.  Two more new species of Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the northern Western Ghats, Maharashtra, India.. Zootaxa. 4656(1):zootaxa.4656.1.2.
Khandekar A, Gaitonde N, Agarwal I.  2019.  Two new Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Shevaroy massif, Tamil Nadu, India, with a preliminary ND2 phylogeny of Indian Cnemaspis.. Zootaxa. 4609(1):zootaxa.4609.1.3.
Robin VV, Vishnudas CK, Gupta P, Rheindt FE, Hooper DM, Ramakrishnan U, Reddy S.  2017.  Two new genera of songbirds represent endemic radiations from the Shola Sky Islands of the Western Ghats, India.. BMC Evol Biol. 17(1):31.
Agarwal I, Mahony S, Giri VB, Chaitanya R, Bauer AM.  2018.  Two new species of bent toed geckos, Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Northeast India with comments on name-bearing types from the region . ZOOTAXA. 4420 (3):334-356.
Sanap RV, Joglekar A, Prajapati D, Caleb JTD.  2017.  Two new species of Langelurillus Próchniewicz, 1994 from India (Araneae: Salticidae: Aelurillina). Zootaxa. 4318(1):135-146.
Agarwal I, Khandekar A, Ramakrishnan U, Vyas R, Giri VB.  2018.  Two new species of the Ophisops microlepis (Squamata: Lacertidae) complex from northwestern India with a key to Indian Ophisops . JOURNAL OF NATURAL HISTORY . 52(13-16):819-847.
Holla H, Sharma A, Bhat P, Shinde D, Das B.  2017.  Two new substituted polychiral 5, 6-dihydro-alpha-pyrones from Orthosiphon diffusus and molecular docking studies. PHYTOCHEMISTRY LETTERS. 22:21-26.
Dhanya SKumari, Hasan G.  2022.  Two photon imaging of calcium responses in murine Purkinje neurons.. STAR Protoc. 3(1):101105.
Singh A, Soler JAntoni, Lauer J, Grill SW, Jahnel M, Zerial M, Thutupalli S.  2023.  Two-component molecular motor driven by a GTPase cycle. NATURE PHYSICS.
Thamm M, Wagler K, Brockmann A, Scheiner R.  2021.  Tyramine 1 Receptor Distribution in the Brain of Corbiculate Bees Points to a Conserved Function.. Brain Behav Evol. :1-13.
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C, De Monte S.  2018.  Ubiquitous abundance distribution of non-dominant plankton across the global ocean.. Nat Ecol Evol.
Garcia-Parajo MF, Mayor S.  2024.  The ubiquitous nanocluster: A molecular scale organizing principle that governs cellular information flow.. Curr Opin Cell Biol. 86:102285.
Adhikari S, Singh V, Nandi S, Ghosal M, Raj NSundar, Khanna J, Bhattacharya A, Kabiraj A, Mondal A, Vasudevan M et al..  2024.  UBR7 in concert with EZH2 inhibits the TGF-β signaling leading to extracellular matrix remodeling.. Cell Rep. 43(7):114394.
Kulkarni SS, Sabharwal V., Sheoran S., Basu A., Matsumoto K., Hisamoto N., Ghosh-Roy A., Koushika SP.  2021.  UNC-16 alters DLK-1 localization and negatively regulates actin and microtubule dynamics in Caenorhabditis elegans regenerating neurons. Genetics. 219(3):iyab139.
Sure GReddy, Chatterjee A, Mishra N, Sabharwal V, Devireddy S, Awasthi A, Mohan S, Koushika SP.  2018.  UNC-16/JIP3 and UNC-76/FEZ1 limit the density of mitochondria in C. elegans neurons by maintaining the balance of anterograde and retrograde mitochondrial transport.. Sci Rep. 8(1):8938.
Choudhary B, Kamak M, Ratnakaran N, Kumar J, Awasthi A, Li C, Nguyen K, Matsumoto K, Hisamoto N, Koushika SP.  2017.  UNC-16/JIP3 regulates early events in synaptic vesicle protein trafficking via LRK-1/LRRK2 and AP complexes.. PLoS Genet. 13(11):e1007100.
Viswan NAnn, Bhalla USingh.  2023.  Understanding molecular signaling cascades in neural disease using multi-resolution models.. Curr Opin Neurobiol. 83:102808.
Mascarenhas NManuel, Gosavi S.  2017.  Understanding protein domain-swapping using structure-based models of protein folding.. Prog Biophys Mol Biol. 128:113-120.
Lalwani DP, Gosavi S.  2021.  Understanding the Folding Mediated Assembly of the Bacteriophage MS2 Coat Protein Dimers.. J Phys Chem B.
Chakraborty S, Singh P, Seshasayee ASai Narain.  2022.  Understanding the Genome-Wide Transcription Response To Various cAMP Levels in Bacteria Using Phenomenological Models.. mSystems. :e0090022.
Willaert B, Suyesh R, Garg S, Giri VB, Bee MA, Biju SD.  2016.  A unique mating strategy without physical contact during fertilization in Bombay Night Frogs (Nyctibatrachus humayuni) with the description of a new form of amplexus and female call.. PeerJ. 4:e2117.
Kottur J, Sharma A, Gore KR, Narayanan N, Samanta B, Pradeepkumar PI, Nair DT.  2015.  Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic.. Structure. 23(1):56-67.
Das SG, Rao M, Iyengar G.  2017.  Universal lower bound on the free-energy cost of molecular measurements.. Phys Rev E. 95(6-1):062410.
Thattai M.  2016.  Universal Poisson Statistics of mRNAs with Complex Decay Pathways.. Biophys J. 110(2):301-5.
Banerjee JPrasad, Mandal R, Banerjee DSankar, Thutupalli S, Rao M.  2022.  Unjamming and emergent nonreciprocity in active ploughing through a compressible viscoelastic fluid.. Nat Commun. 13(1):4533.
D'Souza F, Pudakalakatti SM, Uppangala S, Honguntikar S, Salian SRaj, Kalthur G, Pasricha R, Appajigowda D, Atreya HS, Adiga SKumar.  2016.  Unraveling the association between genetic integrity and metabolic activity in pre-implantation stage embryos.. Sci Rep. 6:37291.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Hilgen G, Sorbaro M, Pirmoradian S, Muthmann J-O, Kepiro IEdit, Ullo S, Ramirez CJuarez, Encinas APuente, Maccione A, Berdondini L et al..  2017.  Unsupervised Spike Sorting for Large-Scale, High-Density Multielectrode Arrays.. Cell Rep. 18(10):2521-2532.
Nandavaram A, Nandakumar A, Kashif GM, Sagar ALakshman, Shailaja G, Ramesh A, Siddavattam D.  2023.  Unusual Relationship between Iron Deprivation and Organophosphate Hydrolase Expression.. Appl Environ Microbiol. :e0190322.
Chatterjee KSankar, Das R.  2021.  An 'up' oriented methionine-aromatic structural motif in SUMO is critical for its stability and activity.. J Biol Chem. :100970.
Joseph AP, Swapna LS, Rakesh R, Srinivasan N.  2016.  Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting.. J Struct Biol.
Trivedi D.  2021.  Using CRISPR-Cas9-based genome engineering tools in Drosophila melanogaster.. Prog Mol Biol Transl Sci. 180:85-121.
Sanyal A, Agarwal S, Ramakrishnan U, Garg KM, Chattopadhyay B.  2022.  Using Environmental Sampling to Enable Zoonotic Pandemic Preparedness.. J Indian Inst Sci. :1-20.
Saltzberg DJ, Viswanath S, Echeverria I, Chemmama IE, Webb B, Sali A.  2021.  Using Integrative Modeling Platform to Compute, Validate, and Archive a Model of a Protein Complex Structure.. Protein Sci. 30(1):250-261.
Sreedharan V, Bhalla US, Ramakrishnan N.  2023.  Using sensitivity analyses to understand bistable system behavior.. BMC Bioinformatics. 24(1):136.
Chib S, Das S, Venkatesan S, Seshasayee ASN, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication. New Journal of Physics. 20(035004)
Chib S, Das S, Venkatesan S, Seshasayee ASai Narain, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication.. New J Phys. 20(3):035004.
Rao VHemanth Gi, Gosavi S.  2016.  Using the folding landscapes of proteins to understand protein function.. Curr Opin Struct Biol. 36:67-74.
Kaushik PKumar, Olsson SB.  2020.  Using virtual worlds to understand insect navigation for bio-inspired systems.. Curr Opin Insect Sci.
Pandey RKumar, Dahiya S, Mahita J, Sowdhamini R, Prajapati VKumar.  2019.  Vaccination and immunization strategies to design Aedes aegypti salivary protein based subunit vaccine tackling Flavivirus infection.. Int J Biol Macromol. 122:1203-1211.
Ansil BR, George CElizabeth, Chandrasingh S, Viswanathan A, Thattai M, Raghu P, Devadiga S, Harikumar AGeetha, Harsha PKandi, Nair I et al..  2023.  Validating saliva as a biological sample for cost-effective, rapid and routine screening for SARS-CoV-2. INDIAN JOURNAL OF MEDICAL MICROBIOLOGY. 45(100384)
Frigola J, Sabarinathan R, Gonzalez-Perez A, Lopez-Bigas N.  2021.  Variable interplay of UV-induced DNA damage and repair at transcription factor binding sites. Nucleic Acids Res. 49(2):891-901.
Garg KM, Ramakrishnan U.  2017.  Variance in Female Reproductive Success Differentially Impacts Effective Population Size in the Short-Nosed Fruit Bat, Cynopterus sphinx. Evolutionary Biology. 44(3):3066-373.
Banerjee JP, Das JK, Choudhury PP, Mukherjee S, Hassan SS, Basu P.  2020.  The Variations of Human miRNAs and Ising Like Base Pairing Models. MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY. 83(3):357-372.
Surendra A, Osuri A.M, Ratnam J.  2021.  Varying impacts of logging frequency on tree communities and carbon storage across evergreen and deciduous tropical forests in the Andaman Islands, India. FOREST ECOLOGY AND MANAGEMENT. (118791)
Mukherjee S, Shelar B, Krishna S.  2022.  Versatile role of miR-24/24-1*/24-2*expression in cancer and other human diseases. AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH . 14(1):20-54.
Baral A, Shruthi KS, Mathew MK.  2015.  Vesicular trafficking and salinity responses in plants.. IUBMB Life. 67(9):677-86.
Sane SP, Manjunath M, Mukunda CL.  2023.  Vestibular feedback for flight control in hawkmoths.. Trends Neurosci.
Rao M.  2023.  A view from the President of the Indian Biophysical Society.. Biophys Rev. 15(3):305-306.
Hembram DShiba Sank, Negi H, Biswas P, Tripathi V, Bhushan L, Shet D, Kumar V, Das R.  2020.  The Viral SUMO-Targeted Ubiquitin Ligase ICP0 is Phosphorylated and Activated by Host Kinase Chk2.. J Mol Biol. 432(7):1952-1977.
Shirke PUday, Goswami H, Kumar V, Shah D, Beri S, Das S, Bellare J, Mayor S, Venkatesh KV, Seth JR et al..  2021.  "Viscotaxis"- Directed Migration of Mesenchymal Stem Cells in Response to Loss Modulus Gradient.. Acta Biomater.
Joseph AMary, Badrinarayanan A.  2020.  Visualizing mutagenic repair: novel insights into bacterial translesion synthesis.. FEMS Microbiol Rev.
Ramachandran P, Devarajan K.  2018.  ViXeN: An open‐source package for managing multimedia data. METHODS IN ECOLOGY AND EVOLUTION . 9(3):785-792.
Karkarey R, Rathod P, Arthur R, Yadav S, Theo A, Alcoverro T.  2020.  Wave exposure reduces herbivory in post-disturbed reefs by filtering species composition, abundance and behaviour of key fish herbivores.. Sci Rep. 10(1):9854.
Devereux HL, Twomey CR, Turner MS, Thutupalli S.  2021.  Whirligig beetles as corralled active Brownian particles.. J R Soc Interface. 18(177):20210114.
Rangu SSunder, Beck A, Sharda M, Mukhopadhyaya R, Seshasayee ASai Narain, Rath D.  2020.  Whole-Genome Sequencing of sp. Strain RSMS, a Highly Efficient Tributyl Phosphate-Degrading Bacterium.. Microbiol Resour Announc. 9(42)
Heilmann S, Krishna S, Kerr B.  2015.  Why do bacteria regulate public goods by quorum sensing?-How the shapes of cost and benefit functions determine the form of optimal regulation. Front Microbiol. 6:767.
Kamat A, Tran NT, Sharda M, Sontakke N, Le TBK, Badrinarayanan A.  2024.  Widespread prevalence of a methylation-dependent switch to activate an essential DNA damage response in bacteria.. PLoS Biol. 22(3):e3002540.
Balaram P.  2024.  William L. Mock and Cucurbituril: The Resurrection of the Behrend Paper of 1905.. ACS Omega. 9(4):4162-4165.
Mani S, Thattai M.  2016.  Wine glasses and hourglasses: Non-adaptive complexity of vesicle traffic in microbial eukaryotes.. Mol Biochem Parasitol.
Deora T, Sane SS, Sane SP.  2021.  Wings and halteres act as coupled dual-oscillators in flies.. Elife. 10
Stotrabhashyam S, Sharma N, Kumar A, Sinha A.  2023.  Winter foraging ecology of stump-tailed macaques in the Hollongapar Gibbon Sanctuary, Assam, India.. J Biosci. 48
Parchure A, Vyas N, Mayor S.  2018.  Wnt and Hedgehog: Secretion of Lipid-Modified Morphogens.. Trends Cell Biol. 28(2):157-170.
Diwan GD, Agashe D.  2018.  Wobbling forth and drifting back: The evolutionary history and impact of bacterial tRNA modifications.. Mol Biol Evol.