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2020
Kaduskar B, Trivedi D, Ratnaparkhi GS.  2020.  Caspar SUMOylation regulates lifespan.. MicroPubl Biol. 2020
Panicker D, Sutaria D, Kumar A, Stafford KM.  2020.  Cetacean Distribution and Diversity in Lakshadweep Waters, India, Using a Platform of Opportunity: October 2015 to April 2016. AQUATIC MAMMALS. 46:80-92.
Dhawale AKumar, M Kumar A, Sinha A.  2020.  Changing ecologies, shifting behaviours: Behavioural responses of a rainforest primate, the lion-tailed macaque Macaca silenus, to a matrix of anthropogenic habitats in southern India.. PLoS One. 15(9):e0238695.
Kaushik PKumar, Renz M, Olsson SB.  2020.  Characterizing long-range search behavior in Diptera using complex 3D virtual environments.. Proc Natl Acad Sci U S A. 117(22):12201-12207.
Radhakrishnan D, Shanmukhan APallipurat, Kareem A, Aiyaz M, Varapparambathu V, Toms A, Kerstens M, Valsakumar D, Landge AN, Shaji A et al..  2020.  A coherent feed forward loop drives vascular regeneration in damaged aerial organs growing in normal developmental-context.. Development.
Vinothkumar KR, Arya C, Ramanathan G, Subramanian R.  2020.  Comparison of CryoEM and X-ray structures of dimethylformamidase.. Prog Biophys Mol Biol.
Sharma A, Tiwari V, Sowdhamini R.  2020.  Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products.. J Biosci. 45
Kumar S, Vijayasarathy M, Venkatesha MA, Sunita P, Balaram P.  2020.  Cone snail analogs of the pituitary hormones oxytocin/vasopressin and their carrier protein neurophysin. Proteomic and transcriptomic identification of conopressins and conophysins.. Biochim Biophys Acta Proteins Proteom. :140391.
Narjala A, Nair A, Tirumalai V, G Sundar VHari, Shivaprasad PV.  2020.  A conserved sequence signature is essential for robust plant miRNA biogenesis.. Nucleic Acids Res.
Das R, Sengupta T, Roy S, Chattarji S, Ray J.  2020.  Convolvulus pluricaulis extract can modulate synaptic plasticity in rat brain hippocampus.. Neuroreport. 31(8):597-604.
Sharma SDas, Pal R, Reddy BKumar, Selvaraj BT, Raj N, Samaga KKumar, Srinivasan DJ, Ornelas L, Sareen D, Livesey MR et al..  2020.  Cortical neurons derived from human pluripotent stem cells lacking FMRP display altered spontaneous firing patterns.. Mol Autism. 11(1):52.
Chakraborty P, Datta S, McEwen BS, Chattarji S.  2020.  Corticosterone after acute stress prevents the delayed effects on the amygdala.. Neuropsychopharmacology.
Case MF, Wigley BJ, Wigley-Coetsee C, Staver AC.  2020.  Could drought constrain woody encroachers in savannas? AFRICAN JOURNAL OF RANGE & FORAGE SCIENCE. 37(1):19-29.
2019
Meena MKumar, Prajapati R, Krishna D, Divakaran K, Pandey Y, Reichelt M, Mathew MK, Boland W, Mithöfer A, Vadassery J.  2019.  The Ca2+ Channel CNGC19 Regulates Arabidopsis defense against Spodoptera Herbivory.. Plant Cell.
Tripathi V, Chatterjee KSankar, Das R.  2019.  Casein kinase-2 mediated phosphorylation increases the SUMO-dependent activity of the cytomegalovirus transactivator IE2.. J Biol Chem.
Domanski APF, Booker SA, Wyllie DJA, Isaac JTR, Kind PC.  2019.  Cellular and synaptic phenotypes lead to disrupted information processing in Fmr1-KO mouse layer 4 barrel cortex.. Nat Commun. 10(1):4814.
Heltberg ML, Krishna S, Jensen MH.  2019.  On chaotic dynamics in transcription factors and the associated effects in differential gene regulation.. Nat Commun. 10(1):71.
Datta V, Hannenhalli S, Siddharthan R.  2019.  ChIPulate: A comprehensive ChIP-seq simulation pipeline.. PLoS Comput Biol. 15(3):e1006921.
Yamamoto J, Adachi K, Bower JR, Matsui H, Nakaya M, Ohtani R, Puneeta P, Suzuki S, Tokioka S, Vijai D et al..  2019.  Close-up observations on the spawning behavior of a captive Japanese flying squid (Todarodes pacificus).. Sci Rep. 9(1):19739.
Alcala N, Goldberg A, Ramakrishnan U, Rosenberg NA.  2019.  Coalescent theory of migration network motifs.. Mol Biol Evol.
Veldman JW, Aleman JC, Alvarado ST, T Anderson M, Archibald S, Bond WJ, Boutton TW, Buchmann N, Buisson E, Canadell JG et al..  2019.  Comment on "The global tree restoration potential".. Science. 366(6463)
Caputi L, Carradec Q, Eveillard D, Kirilovsky A, Pelletier E, Karlusich J, Vieira FRocha Jime, Villar E(, Chaffron S, Malviya S et al..  2019.  Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems. GLOBAL BIOGEOCHEMICAL CYCLES. 33(3):391-419.
Dias M, Pattabiraman C, Siddappa S, Gowda M, Shet A, Smith D, Muehlemann B, Tamma K, Solomon T, Jones T et al..  2019.  Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum.. Wellcome Open Res. 3:44.
Ditlev JA, Vega AR, Köster DVasco, Su X, Tani T, Lakoduk AM, Vale RD, Mayor S, Jaqaman K, Rosen MK.  2019.  A composition-dependent molecular clutch between T cell signaling condensates and actin.. Elife. 8
Vijayasarathy M, Balaram P.  2019.  Cone snail prolyl-4-hydroxylase α-subunit sequences derived from transcriptomic data and mass spectrometric analysis of variable proline hydroxylation in C. amadis venom.. J Proteomics. 194:37-48.
Chatterjee KSankar, Tripathi V, Das R.  2019.  A conserved and buried edge-to-face aromatic interaction in Small Ubiquitin-like Modifier (SUMO) has a role in SUMO stability and function.. J Biol Chem.
Juul JS, Jensen MH, Krishna S.  2019.  Constraints on somite formation in developing embryos.. J R Soc Interface. 16(158):20190451.
Narayanan S, Thirumalai V.  2019.  Contributions of the Cerebellum for Predictive and Instructional Control of Movement.. Curr Opin Physiol. 8:146-151.
Shivaprasad PV, Chen H-M, Patel K, Bond DM, Santos BACM, Baulcombe DC.  2019.  CORRECTION: A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs.. Plant Cell.
Kumar M, Sharma S, Sil P, Kushwaha M, Mayor S, Vishwakarma RA, Singh PP.  2019.  C–H Arylation of N‐Heteroarenes under Metal‐Free Conditions and its Application towards the Synthesis of Pentabromo‐ and Pentachloropseudilins. EUROPEAN JOURNAL OF ORGANIC CHEMISTRY. 2019(22):3591-3598.
2018
Shah A, Jain R, Brockmann A.  2018.  : A Candidate Transcription Factor Involved in Molecular Processes Underlying Time-Memory.. Front Psychol. 9:865.
Sood P, Murthy K, Kumar V, Nonet ML, Menon GI, Koushika SP.  2018.  Cargo crowding at actin-rich regions along axons causes local traffic jams.. Traffic. 19(3):166-181.
Das SG, Rao M, Iyengar G.  2018.  Cascade of transitions in molecular information theory. Journal of Statistical Mechanics: Theory and Experiment. Art No. 093402
Koerner SE, Smith MD, Burkepile DE, Hanan NP, Avolio ML, Collins SL, Knapp AK, Lemoine NP, Forrestel EJ, Eby S et al..  2018.  Change in dominance determines herbivore effects on plant biodiversity.. Nat Ecol Evol.
Chakravarty R, Chattopadhyay B, Ramakrishnan U.  2018.  Comparative Population Structure in Species of Bats Differing in Ecology and Morphology in the Andaman Islands, India. Acta Chiropterologica. 20(1):85-98.
Vijayasarathy M, Basheer SM, Balaram P.  2018.  Cone Snail Glutaminyl Cyclase Sequences from Transcriptomic Analysis and Mass Spectrometric Characterization of Two Pyroglutamyl Conotoxins.. J Proteome Res. 17(8):2695-2703.
Goheen JR, Augustine DJ, Veblen KE, Kimuyu DM, Palmer TM, Porensky LM, Pringle RM, Ratnam J, Riginos C, Sankaran M et al..  2018.  Conservation lessons from large-mammal manipulations in East African savannas: the KLEE, UHURU, and GLADE experiments.. Ann N Y Acad Sci.
Chandrasegaran K, Kandregula SRao, Quader S, Juliano SA.  2018.  Context-dependent interactive effects of non-lethal predation on larvae impact adult longevity and body composition.. PLoS One. 13(2):e0192104.
Koparde P, Mehta P, Reddy S, Ramakrishnan U, Mukherjee S, Robin VV.  2018.  The critically endangered forest owlet Heteroglaux blewitti is nested within the currently recognized Athene clade: A century-old debate addressed.. PLoS One. 13(2):e0192359.
Lajmi A, Datta-Roy A, Vyas R, Agarwal I, Karanth P.  2018.  The curious case of Hemidactylus gujaratensis (Squamata: Gekkonidae).. Zootaxa. 4388(1):137-142.
S Rautu A.  2018.  Curvature instability of membranes near rigid inclusions.. Phys Rev E. 97(2-1):022414.
2017
Chanam J, Borges RM.  2017.  Cauline domatia of the ant-plant Humboldtia brunonis (Fabaceae). FLORA. 236-237
Ladher RK.  2017.  Changing shape and shaping change: Inducing the inner ear.. Semin Cell Dev Biol. 65:39-46.
Yadahalli S, Li J, Lane DP, Gosavi S, Verma CS.  2017.  Characterizing the conformational landscape of MDM2-binding p53 peptides using Molecular Dynamics simulations.. Sci Rep. 7(1):15600.
Malhotra P, Jethva PN, Udgaonkar JB.  2017.  Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding.. Biochemistry. 56(31):4053-4063.
Ramachandran V, Robin VV, Tamma K, Ramakrishnan U.  2017.  Climatic and geographic barriers drive distributional patterns of bird phenotypes within peninsular India. Journal of Avian Biology. 48(5):620-630.
Javali A, Misra A, Leonavicius K, Acharya D, Vyas B, Sambasivan R.  2017.  Co-expression of Tbx6 and Sox2 identifies a novel transient neuromesoderm progenitor cell state.. Development.
Griffith DM, Lehmann CER, Strömberg CAE, Parr CL, R Pennington T, Sankaran M, Ratnam J, Still CJ, Powell RL, Hanan NP et al..  2017.  Comment on "The extent of forest in dryland biomes".. Science. 358(6365)
Karpe SD, Dhingra S, Brockmann A, Sowdhamini R.  2017.  Computational genome-wide survey of odorant receptors from two solitary bees Dufourea novaeangliae (Hymenoptera: Halictidae) and Habropoda laboriosa (Hymenoptera: Apidae).. Sci Rep. 7(1):10823.
Chakrabarti KS, Li J, Das R, R Byrd A.  2017.  Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2.. Structure.
Natesh M, Atla G, Nigam P, Jhala YV, Zachariah A, Borthakur U, Ramakrishnan U.  2017.  Conservation priorities for endangered Indian tigers through a genomic lens.. Sci Rep. 7(1):9614.
Hasan G.  2017.  Control of protein translation by IP3R-mediated Ca(2+) release in Drosophila neuroendocrine cells.. Fly (Austin).
Pathak T, Trivedi D, Hasan G.  2017.  CRISPR-Cas-Induced Mutants Identify a Requirement for dSTIM in Larval Dopaminergic Cells of Drosophila melanogaster.. G3 (Bethesda). 7(3):923-933.
Bindal G, Krishnamurthi R, Seshasayee ASai Narain, Rath D.  2017.  CRISPR-Cas-Mediated Gene Silencing Reveals RacR To Be a Negative Regulator of YdaS and YdaT Toxins in Escherichia coli K-12.. mSphere. 2(6)
Bansal D, Kulkarni J, Nadahalli K, Lakshmanan V, Krishna S, Sasidharan V, Geo J, Dilipkumar S, Pasricha R, Gulyani A et al..  2017.  Cytoplasmic poly (A) binding protein (PABPC2) critically regulates epidermal maintenance and turnover in planarian Schmidtea mediterranea.. Development.
2016
Pranatharthi A., Ross C., Srivastava S.  2016.  Cancer Stem Cells and Radioresistance: Rho/ROCK Pathway Plea Attention. Stem Cells Int. (5785786)
Rao VVHemanth, Desikan R, K Ayappa G, Gosavi S.  2016.  Capturing the Membrane-Triggered Conformational Transition of an α-Helical Pore-Forming Toxin.. J Phys Chem B. 120(47):12064-12078.
Ammothumkandy A, Maliekal TThomas, Bose MVahanan, Rajkumar T, Shirley S, Thejaswini B, Giri VG, Krishna S.  2016.  CD66 and CD49f expressing cells are associated with distinct neoplastic phenotypes and progression in human cervical cancer.. Eur J Cancer. 60:166-178.
Yadav S, Rathod P, Alcoverro T, Arthur R.  2016.  Choice and destiny: the substrate composition and mechanical stability of settlement structures can mediate coral recruit fate in post-bleached reefs. Coral Reefs. 35(1):211-222.
Sengupta T, Das R, Chattarji S.  2016.  Chronic but not acute immobilization stress stably enhances hippocampal CA1 metabotropic glutamate receptor dependent Long-Term Depression.. Neurosci Lett. 633:101-105.
Price BWills, Allan ELouise, Marathe K, Sarkar V, Simon C, Kunte K.  2016.  The cicadas (Hemiptera: Cicadidae) of India, Bangladesh, Bhutan, Myanmar, Nepal and Sri Lanka: an annotated provisional catalogue, regional checklist and bibliography.. Biodivers Data J. (4):e8051.
Harshita C, Jain D.  2016.  Cloning, expression, purification, crystallization and initial crystallographic analysis of FleN from Pseudomonas aeruginosa.. Acta Crystallogr F Struct Biol Commun. 72(Pt 2):135-8.
Gowda M., Ambardar S., Dighe N., Manjunath A., Shankaralingu C., Hallappa P., Harting J., Ranade S., Jagannathan L., Krishna S..  2016.  Comparative analyses of low, medium and high-resolution HLA typing technologies for human populations. Journal of Clinical & Cellular Immunology. 7
Khedkar S, Seshasayee ASai Narain.  2016.  Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology? G3 (Bethesda). 6(6):1597-606.
Patil P, Skariyachan S, Mutt E, Kaushik S.  2016.  Computational Analysis of the Domain Architecture and Substrate-Gating Mechanism of Prolyl Oligopeptidases from Shewanella woodyi and Identification of Probable Lead Molecules.. Interdiscip Sci. 8(3):284-93.
Osuri AM, Ratnam J, Varma V, Alvarez-Loayza P, Astaiza JHurtado, Bradford M, Fletcher C, Ndoundou-Hockemba M, Jansen PA, Kenfack D et al..  2016.  Contrasting effects of defaunation on aboveground carbon storage across the global tropics.. Nat Commun. 7:11351.
Kolay S, Basu U, Raghu P.  2016.  Control of diverse subcellular processes by a single multi-functional lipid phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2].. Biochem J. 473(12):1681-92.
Rana D, Leena M, Nithyananth M, Pasricha R, Manivasagam G, Ramalingam M.  2016.  Control of Stem Cell Fate and Function by Polymer Nanofibers. JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. 16(9):9015-9021.
Köster DV, Mayor S.  2016.  Cortical actin and the plasma membrane: inextricably intertwined.. Curr Opin Cell Biol. 38:81-9.
2015
Mukherjee O, Das G, Sen S, Dutt A, Alladi S, Ghosh A.  2015.  C9orf72 mutations may be rare in frontotemporal lobar degeneration patients in India.. Amyotroph Lateral Scler Frontotemporal Degener. :1-3.
Viswanath B, Jose SP, Squassina A, Thirthalli J, Purushottam M, Mukherjee O, Vladimirov V, Patrinos GP, Del Zompo M, Jain S.  2015.  Cellular models to study bipolar disorder: A systematic review.. J Affect Disord. 184:36-50.
Winata CLanny, Kondrychyn I, Korzh V.  2015.  Changing Faces of Transcriptional Regulation Reflected by Zic3.. Curr Genomics. 16(2):117-27.
Mak S-S, Alev C, Nagai H, Wrabel A, Matsuoka Y, Honda A, Sheng G, Ladher RK.  2015.  Characterization of the finch embryo supports evolutionary conservation of the naive stage of development in amniotes.. Elife. 4:e07178.
Malhotra S, Sowdhamini R.  2015.  Collation and analyses of DNA-binding protein domain families from sequence and structural databanks.. Mol Biosyst. 11(4):1110-8.
Scolari VF, Lagomarsino MCosentino.  2015.  Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.. Soft Matter. 11(9):1677-87.
Varudkar A, Ramakrishnan U.  2015.  Commensalism facilitates gene flow in mountains: a comparison between two Rattus species.. Heredity (Edinb). 115(3):253-61.
Toussaint EFA, Morinière J, Müller CJ, Kunte K, Turlin B, Axel Hausmann, Balke M.  2015.  Comparative molecular species delimitation in the charismatic Nawab butterflies (Nymphalidae, Charaxinae, Polyura).. Mol Phylogenet Evol. 91:194-209.
Harini K, Sowdhamini R.  2015.  Computational Approaches for Decoding Select Odorant-Olfactory Receptor Interactions Using Mini-Virtual Screening.. PLoS One. 10(7):e0131077.
Till SM, Asiminas A, Jackson AD, Katsanevaki D, Barnes SA, Osterweil EK, Bear MF, Chattarji S, Wood ER, Wyllie DJA et al..  2015.  Conserved hippocampal cellular pathophysiology but distinct behavioural deficits in a new rat model of FXS.. Hum Mol Genet. 24(21):5977-84.
Hinsen K, Vaitinadapoule A, Ostuni MA, Etchebest C, Lacapere J-J.  2015.  Construction and validation of an atomic model for bacterial TSPO from electron microscopy density, evolutionary constraints, and biochemical and biophysical data.. Biochim Biophys Acta. 1848(2):568-80.
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJinan, Craik DJ, Finn RD, Gloriam D, Haft DH et al..  2015.  Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.. Database (Oxford). 2015:bav063.
Savory FR, Ramakrishnan U.  2015.  Cryptic diversity and habitat partitioning in an economically important aphid species complex.. Infect Genet Evol. 30:230-7.
Ramdas NM, Shivashankar GV.  2015.  Cytoskeletal control of nuclear morphology and chromatin organization.. J Mol Biol. 427(3):695-706.