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2019
Arora R, Vats A, Chimankar V.  2019.  MCV Truncated Large T antigen interacts with BRD4 in tumors. Matters.
Arora R, Rekhi B, Chandrani P, Krishna S, Dutt A.  2019.  Merkel cell polyomavirus is implicated in a subset of Merkel cell carcinomas, in the Indian subcontinent.. Microb Pathog. :103778.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.  2019.  Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Gopurappilly R, Deb BKumar, Chakraborty P, Hasan G.  2019.  Measurement of Store-Operated Calcium Entry in Human Neural Cells: From Precursors to Differentiated Neurons.. Methods Mol Biol. 2029:257-271.
Sengupta I, Udgaonkar J.  2019.  Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Varahan S, Walvekar A, Sinha V, Krishna S, Laxman S.  2019.  Metabolic constraints drive self-organization of specialized cell groups.. Elife. 8
Upadhyay N, Kar D, Mahajan BDeepak, Nanda S, Rahiman R, Panchakshari NAbhay, Bhagavatula L, Datta S.  2019.  The multitasking abilities of MATE transporters in plants.. J Exp Bot.
Tirumalai V, Swetha C, Nair A, Pandit A, Shivaprasad PV.  2019.  miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.. J Exp Bot.
Goluguri RReddy, Sen S, Udgaonkar J.  2019.  Microsecond sub-domain motions and the folding and misfolding of the mouse prion protein.. Elife. 8
Kumar H, Udgaonkar JB.  2019.  Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Huang Z-F, Chiba H, Jin J, Kizhakke AG, Wang M, Kunte K, Fan X.  2019.  A multilocus phylogenetic framework of the tribe Aeromachini (Lepidoptera: Hesperiidae: Hesperiinae), with implications for taxonomy and biogeography. Systematic Entomology.
Kabir S, Venkatesan R, Thaker M.  2019.  Mismatch in receiver responses to multimodal signals in a diurnal gecko. Animal Behaviour. 147:115-123.
Ashe S, Yadav S.  2019.  Maintenance of Rhodopsin levels in Drosophila photoreceptor and phototransduction requires Protein Kinase D.. Fly (Austin).
Ramesh D, Brockmann A.  2019.  Mass Spectrometric Quantification of Arousal Associated Neurochemical Changes in Single Honey Bee Brains and Brain Regions.. ACS Chem Neurosci. 10(4):950-1959.
2018
Sabarinathan R, Anthon C, Gorodkin J, Seemann SE.  2018.  Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures.. Genes (Basel). 9(12)
Vijayasarathy M, Balaram P.  2018.  Mass spectrometric identification of bromotryptophan containing conotoxin sequences from the venom of C. amadis.. Toxicon. 144:68-74.
Pillai AAS, Anoop A, Prasad V.  2018.  Multi-proxy evidence for an arid shift in the climate and vegetation of the Banni grasslands of western India during the mid- to late-Holocene. Holocene. 28(7):10572-1070.
Francis B, Mathew M, Arigovindan M..  2018.  Multiresolution-based weighted regularization for denoised image interpolation from scattered samples with application to confocal microscopy . Journal of the Optical Society of America A. 35(10):1749-1759.
Goyal A.  2018.  Metabolic adaptations underlying genome flexibility in prokaryotes.. PLoS Genet. 14(10):e1007763.
Jayakumar S, Richhariya S, Deb BKumar, Hasan G.  2018.  A multi-component neuronal response encodes the larval decision to pupariate upon amino acid starvation.. J Neurosci.
Thottacherry JJose, Kosmalska AJoanna, Kumar A, Vishen ASingh, Elosegui-Artola A, Pradhan S, Sharma S, Singh PP, Guadamillas MC, Chaudhary N et al..  2018.  Mechanochemical feedback control of dynamin independent endocytosis modulates membrane tension in adherent cells.. Nat Commun. 9(1):4217.
Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV.  2018.  Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.. Plant Cell.
Kumar H, Udgaonkar JB.  2018.  Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Goyal A, Dubinkina V, Maslov S.  2018.  Multiple stable states in microbial communities explained by the stable marriage problem.. ISME J.
Krishna S, Laxman S.  2018.  A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.. Mol Biol Cell. :mbcE18010017.
Thatte P, Joshi A, Vaidyanathan S, Landguth E, Ramakrishnan U.  2018.  Maintaining tiger connectivity and minimizing extinction into the next century: Insights from landscape genetics and spatially-explicit simulations . BIOLOGICAL CONSERVATION . 218:181-191.
Marshall DC, Moulds M, Hill KBR, Price BW, Wade EJ, Owen CL, Goemans G, Marathe K, Sarkar V, et al..  2018.  A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification. ZOOTAXA. 4424(1):1-64.
Sant HH, Sane SP.  2018.  The Mechanosensory-Motor Apparatus of Antennae in the Oleander hawk moth (Daphnis nerii, Lepidoptera).. J Comp Neurol.
Das S, Hegde A, Shivaprasad PV.  2018.  Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India.. Arch Virol.
Thorpe CJ, Lewis TR, Kulkarni S, Watve A, Gaitonde N, Pryce D, Davies L, Bilton DT, Knight ME.  2018.  Micro-habitat distribution drives patch quality for sub-tropical rocky plateau amphibians in the northern Western Ghats, India.. PLoS One. 13(3):e0194810.
Rupprecht J-F, A Vishen S, Shivashankar GV, Rao M, Prost J.  2018.  Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus.. Phys Rev Lett. 120(9):098001.
Sabareesan AThody, Mathew MK, Udgaonkar JB.  2018.  Mechanism of aggregation and membrane interactions of mammalian prion protein.. Biochim Biophys Acta.
Syama A, Sen S, Kota LNarayanan, Viswanath B, Purushottam M, Varghese M, Jain S, Panicker MM, Mukherjee O.  2018.  Mutation burden profile in familial Alzheimer's disease cases from India.. Neurobiol Aging. 64:158.e7-158.e13.
Deshmukh R, Baral S, Gandhimathi A, Kuwalekar M, Kunte K.  2018.  Mimicry in butterflies: co-option and a bag of magnificent developmental genetic tricks.. Wiley Interdiscip Rev Dev Biol. 7(1)
2017
Mogre A, Veetil RT, Seshasayee ASai Narain.  2017.  Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli.. G3 (Bethesda). 7(12):3955-3966.
Jethva PN, Udgaonkar JB.  2017.  Modulation of the Extent of Cooperative Structural Change During Protein Folding by Chemical Denaturant.. J Phys Chem B. 121(35):8263-8275.
Gangadharan B, Sunitha MS, Mukherjee S, Chowdhury RRoy, Haque F, Sekar N, Sowdhamini R, Spudich JA, Mercer JA.  2017.  Molecular mechanisms and structural features of cardiomyopathy-causing troponin T mutants in the tropomyosin overlap region.. Proc Natl Acad Sci U S A.
Kumar H, Singh J, Kumari P, Udgaonkar JB.  2017.  Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
Jayanth N, Puranik M.  2017.  Mechanism of Discrimination of 8-Oxoguanosine versus Guanosine by Escherichia coli Fpg.. J Phys Chem B.
Melvin P, Bankapalli K, D'Silva P, Shivaprasad PV.  2017.  Methylglyoxal detoxification by a DJ-1 family protein provides dual abiotic and biotic stress tolerance in transgenic plants.. Plant Mol Biol.
Deora T, Gundiah N, Sane SP.  2017.  Mechanics of the thorax in flies.. J Exp Biol. 220(Pt 8):1382-1395.
Brocke E, Djurfeldt M, Bhalla US, Kotaleski JHellgren, Hanke M.  2017.  Multirate method for co-simulation of electrical-chemical systems in multiscale modeling.. J Comput Neurosci.
Sezgin E, Levental I, Mayor S, Eggeling C.  2017.  The mystery of membrane organization: composition, regulation and roles of lipid rafts.. Nat Rev Mol Cell Biol.
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J.  2017.  Motor control of Drosophila feeding behavior.. Elife. 6
Barnosky AD, Hadly EA, Gonzalez P, Head J, P Polly D, A Lawing M, Eronen JT, Ackerly DD, Alex K, Biber E et al..  2017.  Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems.. Science. 355(6325)
Arya D, Sachithanandan SP, Ross C, Palakodeti D, Li S, Krishna S.  2017.  MiRNA182 regulates percentage of myeloid and erythroid cells in chronic myeloid leukemia.. Cell Death Dis. 8(1):e2547.
2016
Fox SJohn, Li J, Tan YSing, Nguyen MN, Pal A, Ouaray Z, Yadahalli S, Kannan S.  2016.  The Multifaceted Roles of Molecular Dynamics Simulations in Drug Discovery.. Curr Pharm Des. 22(23):3585-600.
Lajmi A, Giri VB, K. Karanth P.  2016.  Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). ORGANISMS DIVERSITY & EVOLUTION. 16(3):659-677.
Rasquinha DN, Sankaran M.  2016.  Modelling biome shifts in the Indian subcontinent under scenarios of future climate change . Current Science. 111(1):147-156.
Chakraborty S, Deb BK, Chorna T, Konieczny V, Taylor CW, Hasan G.  2016.  Mutant IP3 receptors attenuate store-operated Ca2+ entry by destabilizing STIM-Orai interactions in Drosophila neurons.. J Cell Sci.
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G.  2016.  Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. METHODS AND APPLICATIONS IN FLUORESCENCE. 4(1)
Mutt E, Sowdhamini R.  2016.  Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Goluguri RReddy, Udgaonkar JB.  2016.  Microsecond rearrangements of hydrophobic clusters in an initially collapsed globule prime structure formation during the folding of a small protein.. J Mol Biol.
Gandhimathi A, Sowdhamini R.  2016.  Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.