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2025
Ravichandran A, Nallusamy S, Selvamani SBabu, Sowdhamini R.  2025.  Uncovering the transcription factors and metabolic pathways unique to proso millet and foxtail millet under salt stress through a comparative transcriptome approach.
2024
Garcia-Parajo MF, Mayor S.  2024.  The ubiquitous nanocluster: A molecular scale organizing principle that governs cellular information flow.. Curr Opin Cell Biol. 86:102285.
Adhikari S, Singh V, Nandi S, Ghosal M, Raj NSundar, Khanna J, Bhattacharya A, Kabiraj A, Mondal A, Vasudevan M et al..  2024.  UBR7 in concert with EZH2 inhibits the TGF-β signaling leading to extracellular matrix remodeling.. Cell Rep. 43(7):114394.
Armstrong EE, Mooney JA, Solari KA, Kim BY, Barsh GS, Grant VB, Greenbaum G, Kaelin CB, Panchenko K, Pickrell JK et al..  2024.  Unraveling the genomic diversity and admixture history of captive tigers in the United States.. Proc Natl Acad Sci U S A. 121(39):e2402924121.
Pal AKumar, Gandhivel VHari-Sunda, Nambiar AB, Shivaprasad PV.  2024.  Upstream regulator of genomic imprinting in rice endosperm is a small RNA-associated chromatin remodeler.. Nat Commun. 15(1):7807.
2023
Viswan NAnn, Bhalla USingh.  2023.  Understanding molecular signaling cascades in neural disease using multi-resolution models.. Curr Opin Neurobiol. 83:102808.
Nandavaram A, Nandakumar A, Kashif GM, Sagar ALakshman, Shailaja G, Ramesh A, Siddavattam D.  2023.  Unusual Relationship between Iron Deprivation and Organophosphate Hydrolase Expression.. Appl Environ Microbiol. :e0190322.
Sreedharan V, Bhalla US, Ramakrishnan N.  2023.  Using sensitivity analyses to understand bistable system behavior.. BMC Bioinformatics. 24(1):136.
2022
Chakraborty S, Singh P, Seshasayee ASai Narain.  2022.  Understanding the Genome-Wide Transcription Response To Various cAMP Levels in Bacteria Using Phenomenological Models.. mSystems. :e0090022.
Banerjee JPrasad, Mandal R, Banerjee DSankar, Thutupalli S, Rao M.  2022.  Unjamming and emergent nonreciprocity in active ploughing through a compressible viscoelastic fluid.. Nat Commun. 13(1):4533.
Sanyal A, Agarwal S, Ramakrishnan U, Garg KM, Chattopadhyay B.  2022.  Using Environmental Sampling to Enable Zoonotic Pandemic Preparedness.. J Indian Inst Sci. :1-20.
2021
Kulkarni SS, Sabharwal V., Sheoran S., Basu A., Matsumoto K., Hisamoto N., Ghosh-Roy A., Koushika SP.  2021.  UNC-16 alters DLK-1 localization and negatively regulates actin and microtubule dynamics in Caenorhabditis elegans regenerating neurons. Genetics. 219(3):iyab139.
Lalwani DP, Gosavi S.  2021.  Understanding the Folding Mediated Assembly of the Bacteriophage MS2 Coat Protein Dimers.. J Phys Chem B.
Chatterjee KSankar, Das R.  2021.  An 'up' oriented methionine-aromatic structural motif in SUMO is critical for its stability and activity.. J Biol Chem. :100970.
Trivedi D.  2021.  Using CRISPR-Cas9-based genome engineering tools in Drosophila melanogaster.. Prog Mol Biol Transl Sci. 180:85-121.
Saltzberg DJ, Viswanath S, Echeverria I, Chemmama IE, Webb B, Sali A.  2021.  Using Integrative Modeling Platform to Compute, Validate, and Archive a Model of a Protein Complex Structure.. Protein Sci. 30(1):250-261.
2020
Kaushik PKumar, Olsson SB.  2020.  Using virtual worlds to understand insect navigation for bio-inspired systems.. Curr Opin Insect Sci.
2018
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C, De Monte S.  2018.  Ubiquitous abundance distribution of non-dominant plankton across the global ocean.. Nat Ecol Evol.
Sure GReddy, Chatterjee A, Mishra N, Sabharwal V, Devireddy S, Awasthi A, Mohan S, Koushika SP.  2018.  UNC-16/JIP3 and UNC-76/FEZ1 limit the density of mitochondria in C. elegans neurons by maintaining the balance of anterograde and retrograde mitochondrial transport.. Sci Rep. 8(1):8938.
Chib S, Das S, Venkatesan S, Seshasayee ASai Narain, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication.. New J Phys. 20(3):035004.
Chib S, Das S, Venkatesan S, Seshasayee ASN, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication. New Journal of Physics. 20(035004)
2017
Choudhary B, Kamak M, Ratnakaran N, Kumar J, Awasthi A, Li C, Nguyen K, Matsumoto K, Hisamoto N, Koushika SP.  2017.  UNC-16/JIP3 regulates early events in synaptic vesicle protein trafficking via LRK-1/LRRK2 and AP complexes.. PLoS Genet. 13(11):e1007100.
Mascarenhas NManuel, Gosavi S.  2017.  Understanding protein domain-swapping using structure-based models of protein folding.. Prog Biophys Mol Biol. 128:113-120.
Das SG, Rao M, Iyengar G.  2017.  Universal lower bound on the free-energy cost of molecular measurements.. Phys Rev E. 95(6-1):062410.
Hilgen G, Sorbaro M, Pirmoradian S, Muthmann J-O, Kepiro IEdit, Ullo S, Ramirez CJuarez, Encinas APuente, Maccione A, Berdondini L et al..  2017.  Unsupervised Spike Sorting for Large-Scale, High-Density Multielectrode Arrays.. Cell Rep. 18(10):2521-2532.
2016
Willaert B, Suyesh R, Garg S, Giri VB, Bee MA, Biju SD.  2016.  A unique mating strategy without physical contact during fertilization in Bombay Night Frogs (Nyctibatrachus humayuni) with the description of a new form of amplexus and female call.. PeerJ. 4:e2117.
Thattai M.  2016.  Universal Poisson Statistics of mRNAs with Complex Decay Pathways.. Biophys J. 110(2):301-5.
D'Souza F, Pudakalakatti SM, Uppangala S, Honguntikar S, Salian SRaj, Kalthur G, Pasricha R, Appajigowda D, Atreya HS, Adiga SKumar.  2016.  Unraveling the association between genetic integrity and metabolic activity in pre-implantation stage embryos.. Sci Rep. 6:37291.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Joseph AP, Swapna LS, Rakesh R, Srinivasan N.  2016.  Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting.. J Struct Biol.
Rao VHemanth Gi, Gosavi S.  2016.  Using the folding landscapes of proteins to understand protein function.. Curr Opin Struct Biol. 36:67-74.
2015
Kottur J, Sharma A, Gore KR, Narayanan N, Samanta B, Pradeepkumar PI, Nair DT.  2015.  Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic.. Structure. 23(1):56-67.