Author [ Title(Desc)] Type Year
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
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Upadhyay AKumar, Sowdhamini R.  2019.  Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: .. Bioinform Biol Insights. 13:1177932218821362.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.  2016.  Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.  2016.  Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Chib S, Ali F, Seshasayee ASai Narain.  2017.  Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.. mSphere. 2(3)
Upadhyay AKumar, Sowdhamini R.  2016.  Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Bhattacharyya T, Sowdhamini R.  2019.  Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.. Evol Bioinform Online. 15:1176934319840289.
Rao RM, Pasha SNaseer, Sowdhamini R.  2016.  Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Ghosh P, Sowdhamini R.  2016.  Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Iyer MS, Joshi AG, Sowdhamini R.  2018.  Genome-wide survey of remote homologues for protein domain superfamilies of known structure reveals unequal distribution across structural classes.. Mol Omics.
Bhattacharyya T, Sowdhamini R.  2021.  Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes. Cell Signal. (110009)
Hsu JL, Crawford JChase, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA.  2017.  Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption.. Sci Rep. 7(1):16227.
Bangalore MPrakash, Adhikarla S, Mukherjee O, Panicker MM.  2017.  Genotoxic Effects of Culture Media on Human Pluripotent Stem Cells.. Sci Rep. 7:42222.
Gupta P, Vishnudas CK, Ramakrishnan U, Robin VV, Dharmarajan G.  2019.  Geographical and host species barriers differentially affect generalist and specialist parasite community structure in a tropical sky-island archipelago.. Proc Biol Sci. 286(1904):20190439.
Kitnya N, Prabhudev MV, Bhatta CPrasad, Pham THong, Nidup T, Megu K, Chakravorty J, Brockmann A, Otis GW.  2020.  Geographical distribution of the giant honey bee Smith, 1871 (Hymenoptera, Apidae).. Zookeys. 951:67-81.
Dhingra S, Sowdhamini R, Cadet F, Offmann B.  2020.  A glance into the evolution of template-free protein structure prediction methodologies.. Biochimie. 175:85-92.
Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells.. Phys Rev E. 96(4-1):042605.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.  2016.  Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Gupta T, Kumar A, Cattenoz PB, VijayRaghavan K, Giangrande A.  2016.  The Glide/Gcm fate determinant controls initiation of collective cell migration by regulating Frazzled.. Elife. 5
Badrinarayanan A, Le TBK, Spille J-H, Cisse II, Laub MT.  2017.  Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB.. PLoS Genet. 13(5):e1006783.
Samhita L, Raval PK, Agashe D.  2020.  Global mistranslation increases cell survival under stress in Escherichia coli.. PLoS Genet. 16(3):e1008654.
Vilizzi L, Copp GH, Hill JE, Adamovich B, Aislabie L, Akin D, Al-Faisal AJ, Almeida D, Azmai MNAmal, Bakiu R et al..  2021.  A global-scale screening of non-native aquatic organisms to identify potentially invasive species under current and future climate conditions.. Sci Total Environ. 788:147868.
Chodankar A, Sadanandappa MK, VijayRaghavan K, Ramaswami M.  2020.  GLOMERULUS-SELECTIVE REGULATION OF A CRITICAL PERIOD FOR INTERNEURON PLASTICITY IN THE ANTENNAL LOBE.. J Neurosci.
Kumari N, Bandyopadhyay D, Kumar V, Venkatesh DB, Prasad S, Prakash S, Krishnaswamy PR, Balaram P, Bhat N.  2021.  Glycation of Albumin and its Implication in Diabetes: A Comprehensive Analysis using Mass Spectrometry.. Clin Chim Acta.
Neelamraju S, Wales DJ, Gosavi S.  2019.  Go-Kit: A Tool To Enable Energy Landscape Exploration of Proteins.. J Chem Inf Model.
Jaiman A, Thattai M.  2020.  Golgi compartments enable controlled biomolecular assembly using promiscuous enzymes.. Elife. 9
Saha S, Anilkumar AAmbika, Mayor S.  2016.  GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
Narayan A, Campos LA, Bhatia S, Fushman D, Naganathan AN.  2017.  Graded Structural Polymorphism in a Bacterial Thermosensor Protein.. J Am Chem Soc. 139(2):792-802.
Agarwal I, Thackeray T, Pal S, Khandekar A.  2020.  Granite boulders act as deep-time climate refugia: A Miocene divergent clade of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Mysore Plateau, India, with descriptions of three new species. JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH.
Wigley BJ, Augustine DJ, Coetsee C, Ratnam J, Sankaran M.  2020.  Grasses continue to trump trees at soil carbon sequestration following herbivore exclusion in a semi-arid African savanna.. Ecology. :e03008.
Kohli M, Mijiddorj TNadia, Suryawanshi KRamesh, Mishra C, Boldgiv B, Sankaran M.  2020.  Grazing and climate change have site-dependent interactive effects on vegetation in Asian montane rangelands. JOURNAL OF APPLIED ECOLOGY.
Varudkar A, Ramakrishnan U.  2018.  Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in .. Ecol Evol. 8(13):6463-6472.
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Dinesh AS, Mathur V, Ansil BR, Chandru V, Chellam R, Vanak ATamim, Ramakrishnan U, Rajagopal P.  2020.  Health Heatmap of India: An Open Data Platform.. J Indian Inst Sci. :1-16.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2018.  Heard but not seen: Comparing bat assemblages and study methods in a mosaic landscape in the Western Ghats of India.. Ecol Evol. 8(8):3883-3894.
Sen S, VijayRaghavan K.  2019.  Heinrich Reichert (1949-2019).. Development. 146(16)
Sachdeva K, Goel M, Sundaramurthy V.  2020.  Heterogeneity in the endocytic capacity of individual macrophage in a population determines its subsequent phagocytosis, infectivity and subcellular trafficking.. Traffic. 21(8):522-533.
Dorazio RM, K Karanth U.  2017.  A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders.. PLoS One. 12(5):e0176966.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Nair AG, Castro LRV, Khoury MEl, Gorgievski V, Giros B, Tzavara ET, Hellgren-Kotaleski J, Vincent P.  2019.  The high efficacy of muscarinic M4 receptor in D1 medium spiny neurons reverses striatal hyperdopaminergia.. Neuropharmacology. 146:74-83.
Ansil BR, Mendenhall IH, Ramakrishnan U.  2021.  High prevalence and diversity of Bartonella in small mammals from the biodiverse Western Ghats.. PLoS Negl Trop Dis. 15(3):e0009178.
Tamma K, Ramakrishnan U.  2015.  Higher speciation and lower extinction rates influence mammal diversity gradients in Asia.. BMC Evol Biol. 15:11.
Agarwal I, Khandekar A, Giri VB, Ramakrishnan U, Karanth P.  2019.  The hills are alive with geckos! A radiation of a dozen species on sky islands across peninsular India (Squamata: Gekkonidae, Hemiphyllodactylus) with the description of three new species. Organisms Diversity & Evolution. 19(2):341–361.
Madan JS, Gupta K, Chattarji S, Bhattacharya A.  2018.  Hippocampal and amygdalar cell-specific translation is similar soon after stress but diverge over time.. Hippocampus.
Varghese PC, Rajam SM, Nandy D, Jory A, Mukherjee A, Dutta D.  2021.  Histone chaperone APLF level dictate implantation of mouse embryo. J Cell Sci. 134(1)
Saha S, Raghupathy R, Mayor S.  2015.  Homo-FRET imaging highlights the nanoscale organization of cell surface molecules.. Methods Mol Biol. 1251:151-73.
Somasundaram S, Véry A-A, Vinekar RS, Ishikawa T, Kumari K, Pulipati S, Kumaresan K, Corratgé-Faillie C, Sowdhamini R, Parida A et al..  2020.  Homology modeling identifies crucial amino-acid residues that confer higher Na+ transport capacity of OcHKT1;5 from Oryza coarctata Roxb.. Plant Cell Physiol.
Singh AS, Shah A, Brockmann A.  2018.  Honey bee foraging induces upregulation of early growth response protein 1, hormone receptor 38 and candidate downstream genes of the ecdysteroid signalling pathway.. Insect Mol Biol. 27(1):90-98.
Chatterjee A, George EA, V PM, Basu P, Brockmann A.  2019.  Honey bees flexibly use two navigational memories when updating dance distance information.. J Exp Biol. 222(Pt 11)
Deb R, Nair A, Agashe D.  2019.  Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies.. PeerJ. 7:e8058.
Nair A, Agashe D.  2016.  Host-specific, spatial and temporal variation in culturable gut bacterial communities of dragonflies. Current Science. 110(8):1513-1523.
Thattai M.  2019.  How contraction has shaped evolution.. Elife. 8
Malhotra P, Udgaonkar JB.  2016.  How cooperative are protein folding and unfolding transitions? Protein Sci.
Chandrasegaran K, Juliano SA.  2019.  How Do Trait-Mediated Non-lethal Effects of Predation Affect Population-Level Performance of Mosquitoes? Front Ecol Evol. 7
Willemen L, Barger NN, Brink Bten, Cantele M, Erasmus BFN, Fisher JL, Gardner T, Holland TG, Kohler F, Kotiaho JS et al..  2020.  How to halt the global decline of lands. NATURE SUSTAINABILITY.
Thatte P, Chandramouli A, Tyagi A, Patel K, Baro B, Chhattani H, Ramakrishnan U.  2019.  Human footprint differentially impacts genetic connectivity of four wide‐ranging mammals in a fragmented landscape. Diversity and Distribution.
Thatte P, Chandramouli A, Tyagi A, Patel K, Baro P, Chhattani H, Ramakrishnan U.  2020.  Human footprint differentially impacts genetic connectivity of four wide-ranging mammals in a fragmented landscape. DIVERSITY AND DISTRIBUTIONS. 26(3):299-314.
Ramachandran R, Kumar A, Sundar KSGopi, Bhalla RSingh.  2017.  Hunting or habitat? Drivers of waterbird abundance and community structure in agricultural wetlands of southern India. Ambio.
Sarkar SS, Trivedi DV, Morck MM, Adhikari AS, Pasha SN, Ruppel KM, Spudich JA.  2020.  The hypertrophic cardiomyopathy mutations R403Q and R663H increase the number of myosin heads available to interact with actin.. Sci Adv. 6(14):eaax0069.
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Chaturvedi D, Reichert H, Gunage RD, VijayRaghavan K.  2017.  Identification and functional characterization of muscle satellite cells in Drosophila.. Elife. 6
Nadella RK, Chellappa A, Subramaniam AG, More RPrabhakar, Shetty S, Prakash S, Ratna N, Vandana VP, Purushottam M, Saini J et al..  2019.  Identification and functional characterization of two novel mutations in KCNJ10 and PI4KB in SeSAME syndrome without electrolyte imbalance.. Hum Genomics. 13(1):53.
Moulick R, Udgaonkar JB.  2017.  Identification and structural characterization of the precursor conformation of the prion protein which directly initiates misfolding and oligomerization.. J Mol Biol.
Bohra AAsgar, Kallman BR, Reichert H, VijayRaghavan K.  2018.  Identification of a Single Pair of Interneurons for Bitter Taste Processing in the Drosophila Brain.. Curr Biol.
Karpe SD, Jain R, Brockmann A, Sowdhamini R.  2016.  Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera.. Genome Biol Evol. 8(9):2879-2895.
Cha DH, Olsson SB, Yee WL, Goughnour RB, Hood GR, Mattsson M, Schwarz D, Feder JL, Linn CE.  2017.  Identification of Host Fruit Volatiles from Snowberry (Symphoricarpos albus), Attractive to Rhagoletis zephyria Flies from the Western United States.. J Chem Ecol.
Ashwini N, Sajeevan RSivarajan, Udayakumar M, Nataraja KN.  2018.  Identification of splice variant of in ssp. genotypes under salinity stress.. 3 Biotech. 8(8):345.
Nair D, Krishna JGopala, Panikkar MVelayudhan, Nair BGopalakris, Pai JGopalakris, Nair SSadasivan.  2018.  Identification, purification, biochemical and mass spectrometric characterization of novel phycobiliproteins from a marine red alga, Centroceras clavulatum.. Int J Biol Macromol.
Joshi RS, Panicker MM.  2018.  Identifying the Cellular Correlates of Antipsychotic Drugs.. eNeuro. 5(5)
Francis B, Mathew M, Arigovindan M.  2019.  Image reconstruction from undersampled confocal microscopy data using multiresolution based maximum entropy regularization. Journal of Instrumentation. 14
Singh ASurindro, Takhellambam MChanu, Cappelletti P, Feligioni M.  2020.  Immediate early gene kakusei potentially plays a role in the daily foraging of honey bees.. PLoS One. 15(5):e0222256.
Sommerlandt FMJ, Brockmann A, Rössler W, Spaethe J.  2019.  Immediate early genes in social insects: a tool to identify brain regions involved in complex behaviors and molecular processes underlying neuroplasticity.. Cell Mol Life Sci. 76(4):637-651.
Singh A, Krishna S.  2019.  Immunomodulatory and Therapeutic Potential of Marine Flora Products in the Treatment of Cancer. Bioactive Natural Products for the Management of Cancer: from Bench to Bedside . :139-166.
Khan I, Prakash A, Agashe D.  2016.  Immunosenescence and the ability to survive bacterial infection in the red flour beetle Tribolium castaneum.. J Anim Ecol. 85(1):291-301.
Samhita L, Raval PK, Stephenson G, Thutupalli S, Agashe D.  2021.  The Impact of Mistranslation on Phenotypic Variability and Fitness.. Evolution.
Salian SRaj, Pandya RKirit, Laxminarayana SLakshmi Ko, Krishnamurthy H, Cheredath A, Tholeti P, Uppangala S, Kalthur G, Majumdar S, Schlatt S et al..  2020.  Impact of Temperature and Time Interval Prior to Immature Testicular-Tissue Organotypic Culture on Cellular Niche.. Reprod Sci.
Suryawanshi KR, Redpath SM, Bhatnagar YVeer, Ramakrishnan U, Chaturvedi V, Smout SC, Mishra C.  2017.  Impact of wild prey availability on livestock predation by snow leopards.. R Soc Open Sci. 4(6):170026.
Dwivedi D, Chattarji S, Bhalla US.  2019.  Impaired reliability and precision of spiking in adults but not juveniles in a mouse model of Fragile X Syndrome.. eNeuro.
Blanco-Redondo B, Nuwal N, Kneitz S, Nuwal T, Halder P, Liu Y, Ehmann N, Scholz N, Mayer A, Kleber J et al..  2019.  Implications of the null mutation for synapsin phosphorylation, longevity, climbing, and behavioural plasticity in adult .. J Exp Biol.
Syiem BLa Nam, Goswami VR, Vasudev D.  2018.  "In a tree by the brook, there's a songbird who sings": Woodlands in an agricultural matrix maintain functionality of a wintering bird community.. PLoS One. 13(8):e0201657.
Mahita J, Harini K, Pichika MRao, Sowdhamini R.  2016.  An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.. J Biomol Struct Dyn. 34(6):1345-62.
Sinha V, Goyal A, Svenningsen SL, Semsey S, Krishna S.  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages.. Front Microbiol. 8:1386.
Nordström K, Dahlbom J, Pragadheesh VS, Ghosh S, Olsson A, Dyakova O, Suresh SKrishna, Olsson SB.  2017.  In situ modeling of multimodal floral cues attracting wild pollinators across environments.. Proc Natl Acad Sci U S A.
Sharma Y, Saha S, Joseph A, Krishnan H, Raghu P.  2020.  In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and function. Wellcome Open Res. 5:16.
P HAhmed, V V, More RPrabhakar, Viswanath B, Jain S, Rao MS, Mukherjee O.  2019.  INDEX-db: The Indian Exome Reference Database (Phase I).. J Comput Biol.
Panicker D, Haris A, Sutaria D.  2018.  Indian Ocean humpback dolphin (Sousa plumbea) estuary-use patterns in Kochi harbor, India. MARINE MAMMAL SCIENCE. 34(1):208-219.
Amanullah A, Mishra R, Upadhyay A, Reddy PP, Das R, Mishra A.  2018.  Indomethacin elicits proteasomal dysfunctions develops apoptosis through mitochondrial abnormalities.. J Cell Physiol. 233(2):1685-1699.
Periasamy VSubbarayan, Riyasdeen A, Rajendiran V, Palaniandavar M, Krishnamurthy H, Alshatwi AAbdullah, Akbarsha MAbdulkader.  2020.  Induction of Redox-Mediated Cell Death in ER-Positive and ER-Negative Breast Cancer Cells by a Copper(II)-Phenolate Complex: An In Vitro and In Silico Study.. Molecules. 25(19)
Rajasekaran S, Thatte J, Periasamy J, Javali A, Jayaram M, Sen D, Krishnagopal A, Jayandharan GR, Sambasivan R.  2018.  Infectivity of adeno-associated virus serotypes in mouse testis.. BMC Biotechnol. 18(1):70.
Prabantu VManjveekar, Naveenkumar N, Srinivasan N.  2021.  Influence of Disease-Causing Mutations on Protein Structural Networks.. Front Mol Biosci. 7:620554.
Kalappa DMonnanda, Subramani PAnnamalai, Basavanna SKanchanaha, Ghosh SKumar, Sundaramurthy V, Uragayala S, Tiwari S, Anvikar AR, Valecha N.  2018.  Influence of midgut microbiota in Anopheles stephensi on Plasmodium berghei infections.. Malar J. 17(1):385.
Rajani P, Rajasekaran C, Vasanthakumari MM, Olsson SB, Ravikanth G, R Shaanker U.  2021.  Inhibition of plant pathogenic fungi by endophytic Trichoderma spp. through mycoparasitism and volatile organic compounds.. Microbiol Res. 242:126595.
Barron HC, Vogels TP, Behrens TE, Ramaswami M.  2017.  Inhibitory engrams in perception and memory.. Proc Natl Acad Sci U S A.
Sane SP, Ramaswamy SSubha, Raja SVarma.  2020.  Insect architecture: structural diversity and behavioral principles.. Curr Opin Insect Sci.
Karpe SDilip, Tiwari V, Ramanathan S.  2021.  InsectOR-Webserver for sensitive identification of insect olfactory receptor genes from non-model genomes.. PLoS One. 16(1):e0245324.
Srivathsa A, K Karanth U, N Kumar S, Oli MK.  2019.  Insights from distribution dynamics inform strategies to conserve a dhole Cuon alpinus metapopulation in India.. Sci Rep. 9(1):3081.
Mahita J, Sowdhamini R.  2017.  Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state.. Biol Direct. 12(1):9.
Kalappurakkal JMathew, Anilkumar AAmbika, Patra C, van Zanten TS, Sheetz MP, Mayor S.  2019.  Integrin Mechano-chemical Signaling Generates Plasma Membrane Nanodomains that Promote Cell Spreading.. Cell. 177(7):1738-1756.e23.
Dey M, Krishnaswamy J, Morisaka T, Kelkar N.  2019.  Interacting effects of vessel noise and shallow river depth elevate metabolic stress in Ganges river dolphins.. Sci Rep. 9(1):15426.
Wills C, Wang B, Fang S, Wang Y, Jin Y, Lutz J, Thompson J, Harms KE, Pulla S, Pasion B et al..  2021.  Interactions between all pairs of neighboring trees in 16 forests worldwide reveal details of unique ecological processes in each forest, and provide windows into their evolutionary histories.. PLoS Comput Biol. 17(4):e1008853.
Badarinath K, Dutta A, Hegde A, Pincha N, Gund R, Jamora C.  2018.  Interactions Between Epidermal Keratinocytes, Dendritic Epidermal T-Cells, and Hair Follicle Stem Cells.. Methods Mol Biol.
Farooq U, Saravanan B, Islam Z, Walavalkar K, Singh AKumar, Jayani RSingh, Meel S, Swaminathan S, Notani D.  2021.  An interdependent network of functional enhancers regulates transcription and EZH2 loading at the INK4a/ARF locus.. Cell Rep. 34(12):108898.

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