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Author Title [ Type(Asc)] Year
Journal Article
Mahita J, Harini K, Pichika MRao, Sowdhamini R.  2016.  An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.. J Biomol Struct Dyn. 34(6):1345-62.
Syiem BLa Nam, Goswami VR, Vasudev D.  2018.  "In a tree by the brook, there's a songbird who sings": Woodlands in an agricultural matrix maintain functionality of a wintering bird community.. PLoS One. 13(8):e0201657.
Blanco-Redondo B, Nuwal N, Kneitz S, Nuwal T, Halder P, Liu Y, Ehmann N, Scholz N, Mayer A, Kleber J et al..  2019.  Implications of the null mutation for synapsin phosphorylation, longevity, climbing, and behavioural plasticity in adult .. J Exp Biol.
Dwivedi D, Chattarji S, Bhalla US.  2019.  Impaired reliability and precision of spiking in adults but not juveniles in a mouse model of Fragile X Syndrome.. eNeuro.
Suryawanshi KR, Redpath SM, Bhatnagar YVeer, Ramakrishnan U, Chaturvedi V, Smout SC, Mishra C.  2017.  Impact of wild prey availability on livestock predation by snow leopards.. R Soc Open Sci. 4(6):170026.
Khan I, Prakash A, Agashe D.  2016.  Immunosenescence and the ability to survive bacterial infection in the red flour beetle Tribolium castaneum.. J Anim Ecol. 85(1):291-301.
Sommerlandt FMJ, Brockmann A, Rössler W, Spaethe J.  2019.  Immediate early genes in social insects: a tool to identify brain regions involved in complex behaviors and molecular processes underlying neuroplasticity.. Cell Mol Life Sci. 76(4):637-651.
Francis B, Mathew M, Arigovindan M.  2019.  Image reconstruction from undersampled confocal microscopy data using multiresolution based maximum entropy regularization. Journal of Instrumentation. 14
Joshi RS, Panicker MM.  2018.  Identifying the Cellular Correlates of Antipsychotic Drugs.. eNeuro. 5(5)
Nair D, Krishna JGopala, Panikkar MVelayudhan, Nair BGopalakris, Pai JGopalakris, Nair SSadasivan.  2018.  Identification, purification, biochemical and mass spectrometric characterization of novel phycobiliproteins from a marine red alga, Centroceras clavulatum.. Int J Biol Macromol.
Ashwini N, Sajeevan RSivarajan, Udayakumar M, Nataraja KN.  2018.  Identification of splice variant of in ssp. genotypes under salinity stress.. 3 Biotech. 8(8):345.
Cha DH, Olsson SB, Yee WL, Goughnour RB, Hood GR, Mattsson M, Schwarz D, Feder JL, Linn CE.  2017.  Identification of Host Fruit Volatiles from Snowberry (Symphoricarpos albus), Attractive to Rhagoletis zephyria Flies from the Western United States.. J Chem Ecol.
Karpe SD, Jain R, Brockmann A, Sowdhamini R.  2016.  Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera.. Genome Biol Evol. 8(9):2879-2895.
Bohra AAsgar, Kallman BR, Reichert H, VijayRaghavan K.  2018.  Identification of a Single Pair of Interneurons for Bitter Taste Processing in the Drosophila Brain.. Curr Biol.
Moulick R, Udgaonkar JB.  2017.  Identification and structural characterization of the precursor conformation of the prion protein which directly initiates misfolding and oligomerization.. J Mol Biol.
Nadella RK, Chellappa A, Subramaniam AG, More RPrabhakar, Shetty S, Prakash S, Ratna N, Vandana VP, Purushottam M, Saini J et al..  2019.  Identification and functional characterization of two novel mutations in KCNJ10 and PI4KB in SeSAME syndrome without electrolyte imbalance.. Hum Genomics. 13(1):53.
Chaturvedi D, Reichert H, Gunage RD, VijayRaghavan K.  2017.  Identification and functional characterization of muscle satellite cells in Drosophila.. Elife. 6
Ramachandran R, Kumar A, Sundar KSGopi, Bhalla RSingh.  2017.  Hunting or habitat? Drivers of waterbird abundance and community structure in agricultural wetlands of southern India. Ambio.
Chandrasegaran K, Juliano SA.  2019.  How Do Trait-Mediated Non-lethal Effects of Predation Affect Population-Level Performance of Mosquitoes? Front Ecol Evol. 7
Malhotra P, Udgaonkar JB.  2016.  How cooperative are protein folding and unfolding transitions? Protein Sci.
Thattai M.  2019.  How contraction has shaped evolution.. Elife. 8
Nair A, Agashe D.  2016.  Host-specific, spatial and temporal variation in culturable gut bacterial communities of dragonflies. Current Science. 110(8):1513-1523.
Deb R, Nair A, Agashe D.  2019.  Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies.. PeerJ. 7:e8058.
Chatterjee A, George EA, V PM, Basu P, Brockmann A.  2019.  Honey bees flexibly use two navigational memories when updating dance distance information.. J Exp Biol. 222(Pt 11)
Singh AS, Shah A, Brockmann A.  2018.  Honey bee foraging induces upregulation of early growth response protein 1, hormone receptor 38 and candidate downstream genes of the ecdysteroid signalling pathway.. Insect Mol Biol. 27(1):90-98.
Saha S, Raghupathy R, Mayor S.  2015.  Homo-FRET imaging highlights the nanoscale organization of cell surface molecules.. Methods Mol Biol. 1251:151-73.
Madan JS, Gupta K, Chattarji S, Bhattacharya A.  2018.  Hippocampal and amygdalar cell-specific translation is similar soon after stress but diverge over time.. Hippocampus.
Agarwal I, Khandekar A, Giri VB, Ramakrishnan U, Karanth P.  2019.  The hills are alive with geckos! A radiation of a dozen species on sky islands across peninsular India (Squamata: Gekkonidae, Hemiphyllodactylus) with the description of three new species. Organisms Diversity & Evolution. 19(2):341–361.
Tamma K, Ramakrishnan U.  2015.  Higher speciation and lower extinction rates influence mammal diversity gradients in Asia.. BMC Evol Biol. 15:11.
Nair AG, Castro LRV, Khoury MEl, Gorgievski V, Giros B, Tzavara ET, Hellgren-Kotaleski J, Vincent P.  2019.  The high efficacy of muscarinic M4 receptor in D1 medium spiny neurons reverses striatal hyperdopaminergia.. Neuropharmacology. 146:74-83.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Dorazio RM, K Karanth U.  2017.  A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders.. PLoS One. 12(5):e0176966.
Sen S, VijayRaghavan K.  2019.  Heinrich Reichert (1949-2019).. Development. 146(16)
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2018.  Heard but not seen: Comparing bat assemblages and study methods in a mosaic landscape in the Western Ghats of India.. Ecol Evol. 8(8):3883-3894.
Varudkar A, Ramakrishnan U.  2018.  Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in .. Ecol Evol. 8(13):6463-6472.
Narayan A, Campos LA, Bhatia S, Fushman D, Naganathan AN.  2017.  Graded Structural Polymorphism in a Bacterial Thermosensor Protein.. J Am Chem Soc. 139(2):792-802.
Saha S, Anilkumar AAmbika, Mayor S.  2016.  GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
Neelamraju S, Wales DJ, Gosavi S.  2019.  Go-Kit: A Tool To Enable Energy Landscape Exploration of Proteins.. J Chem Inf Model.
Badrinarayanan A, Le TBK, Spille J-H, Cisse II, Laub MT.  2017.  Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB.. PLoS Genet. 13(5):e1006783.
Gupta T, Kumar A, Cattenoz PB, VijayRaghavan K, Giangrande A.  2016.  The Glide/Gcm fate determinant controls initiation of collective cell migration by regulating Frazzled.. Elife. 5
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.  2016.  Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells.. Phys Rev E. 96(4-1):042605.
Gupta P, Vishnudas CK, Ramakrishnan U, Robin VV, Dharmarajan G.  2019.  Geographical and host species barriers differentially affect generalist and specialist parasite community structure in a tropical sky-island archipelago.. Proc Biol Sci. 286(1904):20190439.
Bangalore MPrakash, Adhikarla S, Mukherjee O, Panicker MM.  2017.  Genotoxic Effects of Culture Media on Human Pluripotent Stem Cells.. Sci Rep. 7:42222.
Hsu JL, Crawford JChase, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA.  2017.  Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption.. Sci Rep. 7(1):16227.
Iyer MS, Joshi AG, Sowdhamini R.  2018.  Genome-wide survey of remote homologues for protein domain superfamilies of known structure reveals unequal distribution across structural classes.. Mol Omics.
Ghosh P, Sowdhamini R.  2016.  Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Rao RM, Pasha SNaseer, Sowdhamini R.  2016.  Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Bhattacharyya T, Sowdhamini R.  2019.  Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.. Evol Bioinform Online. 15:1176934319840289.
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Upadhyay AKumar, Sowdhamini R.  2016.  Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Chib S, Ali F, Seshasayee ASai Narain.  2017.  Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.. mSphere. 2(3)
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.  2016.  Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.  2016.  Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Upadhyay AKumar, Sowdhamini R.  2019.  Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: .. Bioinform Biol Insights. 13:1177932218821362.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.  2015.  The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..  2015.  Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.  2016.  Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Dahal N, Lissovsky AA, Lin Z, Solari K, Hadly EA, Zhan X, Ramakrishnan U.  2017.  Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya.. Mol Phylogenet Evol. 106:55-60.
Patel RP, Wutke S, Lenz D, Mukherjee S, Ramakrishnan U, Veron G, Fickel J, Wilting A, Förster DW.  2017.  Genetic Structure and Phylogeography of the Leopard Cat (Prionailurus bengalensis) Inferred from Mitochondrial Genomes.. J Hered. 108(4):349-360.
Janardan V, Sharma S, Basu U, Raghu P.  2019.  A Genetic Screen in To Identify Novel Regulation of Cell Growth by Phosphoinositide Signaling.. G3 (Bethesda).
Baral S, Arumugam G, Deshmukh R, Kunte K.  2019.  Genetic architecture and sex-specific selection govern modular, male-biased evolution of .. Sci Adv. 5(5):eaau3753.
Parveen S, Panicker MM, Gupta PKumar.  2017.  Generation of an induced pluripotent stem cell line from chorionic villi of a Turner syndrome spontaneous abortion.. Stem Cell Res. 19:12-16.
Houot B, Cazalé-Debat L, Fraichard S, Everaerts C, Saxena N, Sane SP, Ferveur J-F.  2018.  Gene regulation and species-specific evolution of free-flight odor-tracking in Drosophila.. Mol Biol Evol. 35(1):3-15.
Solari KA, Ramakrishnan U, Hadly EA.  2018.  Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient.. PLoS One. 13(12):e0207936.
Mullin AP, Sadanandappa MK, Ma W, Dickman DK, VijayRaghavan K, Ramaswami M, Sanyal S, Faundez V.  2015.  Gene dosage in the dysbindin schizophrenia susceptibility network differentially affect synaptic function and plasticity.. J Neurosci. 35(1):325-38.
Iyer MS, Bhargava K, Pavalam M, Sowdhamini R.  2019.  GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.. Database (Oxford). 2019
Gowda SBM, Paranjpe PD, O Reddy V, Thiagarajan D, Palliyil S, Reichert H, VijayRaghavan K.  2018.  GABAergic inhibition of leg motoneurons is required for normal walking behavior in freely moving.. Proc Natl Acad Sci U S A.
Sabareesan AThody, Udgaonkar JB.  2017.  The G126V Mutation in the Mouse Prion Protein Hinders Nucleation-Dependent Fibril Formation by Slowing Initial Fibril Growth and by Increasing the Critical Concentration.. Biochemistry. 56(44):5931-5942.
Yadahalli S, Gosavi S.  2016.  Functionally Relevant Specific Packing Can Determine Protein Folding Routes.. J Mol Biol. 428(2 Pt B):509-21.
Ratnam J, Chengappa SK, Machado S, Nataraj N, Osuri AM, Sankaran M.  2019.  Functional Traits of Trees From Dry Deciduous “Forests” of Southern India Suggest Seasonal Drought and Fire Are Important Drivers. Front. Ecol. Evol..
G KP, Kuruvilla S, Mathew MK.  2015.  Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).. Plant Physiol Biochem. 97:165-74.
Mathre S, Reddy B, Ramya V, Krishnan H, Ghosh A, Raghu P.  2019.  Functional analysis of the biochemical activity of mammalian phosphatidylinositol 5 phosphate 4-kinase enzymes.. Biosci Rep.
Panda A, Thakur R, Krishnan H, Naik A, Shinde D, Raghu P.  2018.  Functional analysis of mammalian phospholipase D enzymes.. Biosci Rep.
Batra S, Corcoran J, Zhang D-D, Pal P, P UK, Kulkarni R, Löfstedt C, Sowdhamini R, Olsson SB.  2019.  A Functional Agonist of Insect Olfactory Receptors: Behavior, Physiology and Structure.. Front Cell Neurosci. 13:134.
Farheen N, Thattai M.  2019.  Frustration and fidelity in influenza genome assembly.. J R Soc Interface. 16(160):20190411.
Joshi AA, Ratnam J, Sankaran M.  2019.  Frost maintains forests and grasslands as alternate states in a montane tropical forest–grassland mosaic; but alien tree invasion and warming can disrupt this balance. JOURNAL OF ECOLOGY.
Chaturvedi D, VijayRaghavan K.  2019.  From a syncytium to mononucleate cells and back: Yki and JNK in symphony.. J Cell Biol.
Diwan GD, Agashe D.  2016.  The Frequency of Internal Shine-Dalgarno-like Motifs in Prokaryotes.. Genome Biol Evol. 8(6):1722-33.
Milán-Garcés EA, Thaore P, Udgaonkar JB, Puranik M.  2015.  Formation of a CH-π contact in the core of native barstar during folding.. J Phys Chem B. 119(7):2928-32.
Hasan G.  2019.  Formal structures of mentorship in universities and research institutions will benefit both science and scientists. Current Science. 116(10):1615-1616.
Joshi AA, Sankaran M, Ratnam J.  2018.  ‘Foresting’ the grassland: Historical management legacies in forest-grassland mosaics in southern India, and lessons for the conservation of tropical grassy biomes. Biological Conservation. 224:144-152.
Zambre AM, Arthur R.  2018.  Foraging plasticity in obligate corallivorous Melon butterflyfish across three recently bleached reefs . ETHOLOGY. 124 (5):302-310.
Patankar V, D'Souza E, Alcoverro T, Arthur R.  2016.   For traditional island communities in the Nicobar archipelago, complete no-go areas are the most effective form of marine management . OCEAN & COASTAL MANAGEMENT . 133:53-63.
Rao VVHemanth, Gosavi S.  2018.  On the folding of a structurally complex protein to its metastable active state.. Proc Natl Acad Sci U S A.
D'Souza MNinochka, Gowda NKumar Chan, Tiwari V, Babu ROttakandat, Anand P, Dastidar SGhosh, Singh R, Selvaraja B, Pal R, Ramesh A et al..  2018.  FMRP Interacts with C/D Box snoRNA in the Nucleus and Regulates Ribosomal RNA Methylation.. iScience. 9:399-411.
Ravi P, Trivedi D, Hasan G.  2018.  FMRFa receptor stimulated Ca2+ signals alter the activity of flight modulating central dopaminergic neurons in Drosophila melanogaster.. PLoS Genet. 14(8):e1007459.
Roy S, Mathew MK.  2018.  Fluid flow modulates electrical activity in cardiac hERG potassium channels.. J Biol Chem.
Thutupalli S, Geyer D, Singh R, Adhikari R, Stone HA.  2018.  Flow-induced phase separation of active particles is controlled by boundary conditions.. Proc Natl Acad Sci U S A.
Jain A., Kunte K, Webb E.L..  2016.  Flower specialization of butterflies and impacts of non-native flower use in a transformed tropical landscape. Biological Conservation. 201:84–191.
Liu P, Sane SP, Mongeau J-M, Zhao J, Cheng B.  2019.  Flies land upside down on a ceiling using rapid visually mediated rotational maneuvers.. Sci Adv. 5(10):eaax1877.
Nandwani N, Surana P, Negi H, Mascarenhas NM, Udgaonkar JB, Das R, Gosavi S.  2019.  A five-residue motif for the design of domain swapping in proteins.. Nat Commun. 10(1):452.
Jumani S, Rao S, Kelkar N.  2018.  Fish community responses to stream flow alterations and habitat modifications by small hydropower projects in the Western Ghats biodiversity hotspot, India. Aquatic Conservation: Marine and Freshwater Ecosystems. 28(4):9792-993.
Deshpande K., Gangal M, Kelkar N.  2016.  First record of a bat from the Lakshadweep archipelago, southwestern India. Mammalia. 80(2):223-225.
Caleb JTD, Sanap R.V., Patel KG, Sudhikumar AV.  2018.  First description of the female of Chrysilla volupe (Karsch, 1879) (Araneae: Salticidae: Chrysillini) from India, with notes on the species’ distribution and life history. Arthropoda Selecta. 27(2):143-153.
Mirza ZA, Gowande GG, Patil R, Ambekar M, Patel H.  2018.  First appearance deceives many: disentangling the species complex using an integrated approach.. PeerJ. 6:e5341.
Viswan NA, HarshaRani GVani, Stefan MI, Bhalla US.  2018.  FindSim: A Framework for Integrating Neuronal Data and Signaling Models.. Front Neuroinform. 12:38.
Dovih P, Laing ED, Chen Y, Low DHW, Ansil BR, Yang X, Shi Z, Broder CC, Smith GJD, Linster M et al..  2019.  Filovirus-reactive antibodies in humans and bats in Northeast India imply zoonotic spillover.. PLoS Negl Trop Dis. 13(10):e0007733.
Honda A, Kita T, Seshadri SVidhya, Misaki K, Ahmed Z, Ladbury JE, Richardson GP, Yonemura S, Ladher RK.  2018.  FGFR1-mediated protocadherin-15 loading mediates cargo specificity during intraflagellar transport in inner ear hair-cell kinocilia.. Proc Natl Acad Sci U S A. 115(33):8388-8393.
Khan I, Prakash A, Issar S, Umarani M, Sasidharan R, Masagalli JN, Lama P, Venkatesan R, Agashe D.  2018.  Female Density-Dependent Chemical Warfare Underlies Fitness Effects of Group Sex Ratio in Flour Beetles. American Naturalist.

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