Author Title [ Type(Desc)] Year
Journal Article
Deora T, Singh AKumar, Sane SP.  2015.  Biomechanical basis of wing and haltere coordination in flies.. Proc Natl Acad Sci U S A. 112(5):1481-6.
Das A, Vishvakarma V, Dey A, Dey S, Gupta A, Das M, Vishwakarma KKant, Roy DSaha, Yadav S, Kesarwani S et al..  2021.  Biophysical Properties of the Isolated Spike Protein Binding Helix of Human ACE2.. Biophys J.
Shee S, Veetil RT, Mohanraj K, Das M, Malhotra N, Bandopadhyay D, Beig H, Birua S, Niphadkar S, Nagarajan SNarayanan et al..  2023.  Biosensor-integrated transposon mutagenesis reveals as a coordinator of redox homeostasis in .. Elife. 12
Ghosh S, Yu C-L, Ferraro DJ, Sudha S, Pal SKumar, Schaefer WF, Gibson DT, Ramaswamy S.  2016.  Blue protein with red fluorescence.. Proc Natl Acad Sci U S A. 113(41):11513-11518.
Samhita L.  2021.  The Boggarts of biology: how non-genetic changes influence the genotype.. Curr Genet. 67(1):65-77.
Spedding M, Chattarji S, Spedding C, Jay TM.  2020.  Brain circuits at risk in psychiatric diseases and pharmacological pathways.. Therapie. S0040-5957(20):30222-5.
Spedding M, Chattarji S, Spedding C, Jay TM.  2021.  Brain circuits at risk in psychiatric diseases and pharmacological pathways.. Therapie. 76(2):75-86.
McNeill MS, Kapheim KM, Brockmann A, McGill TAW, Robinson GE.  2016.  Brain regions and molecular pathways responding to food reward type and value in honey bees.. Genes Brain Behav. 15(3):305-17.
Vishen ASingh, Prost J, Rao M.  2019.  Breakdown of effective temperature, power law interactions, and self-propulsion in a momentum-conserving active fluid.. Phys Rev E. 100(6-1):062602.
Pawar P, Naniwadekar R, Raman TRShankar, Mudappa D.  2018.  Breeding Biology of Great Hornbill Buceros bicornis in Tropical Rainforest and Human-Modified Plantation Landscape in Western Ghats, India. Ornithological Science. 17(2):205-216.
Sanz-Paz M, van Zanten TS, Manzo C, Mivelle M, Garcia-Parajo MF.  2023.  Broadband Plasmonic Nanoantennas for Multi-Color Nanoscale Dynamics in Living Cells.. Small. :e2207977.
Wyart C, Thirumalai V.  2019.  Building behaviors, one layer at a time.. Elife. 8
Johannes L, Parton RG, Bassereau P, Mayor S.  2015.  Building endocytic pits without clathrin.. Nat Rev Mol Cell Biol. 16(5):311-21.
Krishna S, Prasad R.  2022.  Building Indian Biomedical Leadership to Bridge the Gap Between Science, Primary Health Care and Public Health.. J Indian Inst Sci. :1-7.
Krishna S, Prasad R.  2023.  Building Indian Biomedical Leadership to Bridge the Gap Between Science, Primary Health Care and Public Health. JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE .
Gilra A, Bhalla US.  2015.  Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding.. PLoS One. 10(5):e0098045.
Joshi S, Sawant D, Ogale H, Kunte K.  2022.  Burmagomphus chaukulensis, a new species of dragonfly (Odonata: Anisoptera: Gomphidae) from the Western Ghats, Maharashtra, India. ZOOTAXA . 5133(3):413-430.
Jayadevan A, Mukherjee S, Vanak AT.  2018.  Bush encroachment influences nocturnal rodent community and behaviour in a semi-arid grassland in Gujarat, India . Journal of Arid Environments. 153:32-38.
Sondhi S., Kunte K.  2016.  Butterflies (Lepidoptera) of the Kameng Protected Area Complex, western Arunachal Pradesh, India. Journal of Threatened Taxa. 8:9053–9124.
Kunte K, Roy P, Kalesh S., Kodandaramaia U.  2015.  Butterflies of India. Indian Foundation for Butterflies. 2(10)
Mukherjee O, Das G, Sen S, Dutt A, Alladi S, Ghosh A.  2015.  C9orf72 mutations may be rare in frontotemporal lobar degeneration patients in India.. Amyotroph Lateral Scler Frontotemporal Degener. :1-3.
Meena MKumar, Prajapati R, Krishna D, Divakaran K, Pandey Y, Reichelt M, Mathew MK, Boland W, Mithöfer A, Vadassery J.  2019.  The Ca2+ Channel CNGC19 Regulates Arabidopsis defense against Spodoptera Herbivory.. Plant Cell.
Garcia-Font N, Mitchell-Heggs R, Saxena K, Gabbert C, Taylor G, Mastroberadino G, Spooner PA, Gobbo F, Dabrowska JK, Chattarji S et al..  2022.  Ca2+ imaging of self and other in medial prefrontal cortex during social dominance interactions in a tube test.. Proc Natl Acad Sci U S A. 119(31):e2107942119.
Carlevaro-Fita J, Lanzós A, Feuerbach L, Hong C, Mas-Ponte D, Pedersen JSkou, Johnson R.  2020.  Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.. Commun Biol. 3(1):56.
Pranatharthi A., Ross C., Srivastava S.  2016.  Cancer Stem Cells and Radioresistance: Rho/ROCK Pathway Plea Attention. Stem Cells Int. (5785786)
Shah A, Jain R, Brockmann A.  2018.  : A Candidate Transcription Factor Involved in Molecular Processes Underlying Time-Memory.. Front Psychol. 9:865.
Rao VVHemanth, Desikan R, K Ayappa G, Gosavi S.  2016.  Capturing the Membrane-Triggered Conformational Transition of an α-Helical Pore-Forming Toxin.. J Phys Chem B. 120(47):12064-12078.
Patel FDivan, Pinto W, Dey M, Alcoverro T, Arthur R.  2023.  Carbonate budgets in Lakshadweep Archipelago bear the signature of local impacts and global climate disturbances. CORAL REEFS .
Bagchi B, Seal S, Raina M, Basu DNath, Khan I.  2022.  Carcass Scavenging Relaxes Chemical-Driven Female Interference Competition in Flour Beetles. AMERICAN NATURALIST.
Agashe D, Maheshwary S, Pattanaik JKumar, Prakash J, Bhatt P, Arya S.S, Chatterjee S, Kumar P, Singh P, Abbas N et al..  2022.  Career challenges for young independent researchers in India. CURRENT SCIENCE. 122(2):135-143.
Sood P, Murthy K, Kumar V, Nonet ML, Menon GI, Koushika SP.  2018.  Cargo crowding at actin-rich regions along axons causes local traffic jams.. Traffic. 19(3):166-181.
Moreno-Layseca P, Jäntti NZ, Godbole R, Sommer C, Jacquemet G, Al-Akhrass H, Conway JRW, Kronqvist P, Kallionpää RE, Oliveira-Ferrer L et al..  2021.  Cargo-specific recruitment in clathrin- and dynamin-independent endocytosis.. Nat Cell Biol.
Das SG, Rao M, Iyengar G.  2018.  Cascade of transitions in molecular information theory. Journal of Statistical Mechanics: Theory and Experiment. Art No. 093402
Tripathi V, Chatterjee KSankar, Das R.  2019.  Casein kinase-2 mediated phosphorylation increases the SUMO-dependent activity of the cytomegalovirus transactivator IE2.. J Biol Chem.
Kaduskar B, Trivedi D, Ratnaparkhi GS.  2020.  Caspar SUMOylation regulates lifespan.. MicroPubl Biol. 2020
Chanam J, Borges RM.  2017.  Cauline domatia of the ant-plant Humboldtia brunonis (Fabaceae). FLORA. 236-237
Nayim P, Mbaveng AT, Sanjukta M, Rikesh J, Kuete V, Krishna S.  2021.  CD24 gene inhibition and TIMP-4 gene upregulation by Imperata cylindrica's root extract prevents metastasis of CaSki cells via inhibiting PI3K/Akt/snail signaling pathway and blocking EMT. J Ethnopharmacol.
Ammothumkandy A, Maliekal TThomas, Bose MVahanan, Rajkumar T, Shirley S, Thejaswini B, Giri VG, Krishna S.  2016.  CD66 and CD49f expressing cells are associated with distinct neoplastic phenotypes and progression in human cervical cancer.. Eur J Cancer. 60:166-178.
Domanski APF, Booker SA, Wyllie DJA, Isaac JTR, Kind PC.  2019.  Cellular and synaptic phenotypes lead to disrupted information processing in Fmr1-KO mouse layer 4 barrel cortex.. Nat Commun. 10(1):4814.
Iyer KS, Prabhakara C, Mayor S, Rao M.  2023.  Cellular compartmentalisation and receptor promiscuity as a strategy for accurate and robust inference of position during morphogenesis. . Elife. :12:e79257.
Viswanath B, Jose SP, Squassina A, Thirthalli J, Purushottam M, Mukherjee O, Vladimirov V, Patrinos GP, Del Zompo M, Jain S.  2015.  Cellular models to study bipolar disorder: A systematic review.. J Affect Disord. 184:36-50.
S IMeenakshi, Rao M, Mayor S, Sowdhamini R.  2023.  A census of actin-associated proteins in humans.. Front Cell Dev Biol. 11:1168050.
Jana SChandra.  2021.  Centrosome structure and biogenesis: Variations on a theme? Semin Cell Dev Biol.
Arumugam S, Schmieder S, Pezeshkian W, Becken U, Wunder C, Chinnapen D, Ipsen JHjort, Kenworthy AK, Lencer W, Mayor S et al..  2021.  Ceramide structure dictates glycosphingolipid nanodomain assembly and function.. Nat Commun. 12(1):3675.
Panicker D, Sutaria D, Kumar A, Stafford KM.  2020.  Cetacean Distribution and Diversity in Lakshadweep Waters, India, Using a Platform of Opportunity: October 2015 to April 2016. AQUATIC MAMMALS. 46:80-92.
Raghu P, Sharma Y, Devi ABhuvanendr, Krishnan H.  2024.  Challenges and opportunities for discovering the biology of rare genetic diseases of the brain.. J Biosci. 49
Koerner SE, Smith MD, Burkepile DE, Hanan NP, Avolio ML, Collins SL, Knapp AK, Lemoine NP, Forrestel EJ, Eby S et al..  2018.  Change in dominance determines herbivore effects on plant biodiversity.. Nat Ecol Evol.
Dhawale AKumar, M Kumar A, Sinha A.  2020.  Changing ecologies, shifting behaviours: Behavioural responses of a rainforest primate, the lion-tailed macaque Macaca silenus, to a matrix of anthropogenic habitats in southern India.. PLoS One. 15(9):e0238695.
Winata CLanny, Kondrychyn I, Korzh V.  2015.  Changing Faces of Transcriptional Regulation Reflected by Zic3.. Curr Genomics. 16(2):117-27.
Ladher RK.  2017.  Changing shape and shaping change: Inducing the inner ear.. Semin Cell Dev Biol. 65:39-46.
Heltberg ML, Krishna S, Jensen MH.  2019.  On chaotic dynamics in transcription factors and the associated effects in differential gene regulation.. Nat Commun. 10(1):71.
Mak S-S, Alev C, Nagai H, Wrabel A, Matsuoka Y, Honda A, Sheng G, Ladher RK.  2015.  Characterization of the finch embryo supports evolutionary conservation of the naive stage of development in amniotes.. Elife. 4:e07178.
Kaushik PKumar, Renz M, Olsson SB.  2020.  Characterizing long-range search behavior in Diptera using complex 3D virtual environments.. Proc Natl Acad Sci U S A. 117(22):12201-12207.
Yadahalli S, Li J, Lane DP, Gosavi S, Verma CS.  2017.  Characterizing the conformational landscape of MDM2-binding p53 peptides using Molecular Dynamics simulations.. Sci Rep. 7(1):15600.
Srivathsa A, Banerjee A, Banerjee S, Chawla MMathew, Das A, Ganguly D, Rodrigues RG, Adhya T, Bhatia S, Kshettry A et al..  2022.  Chasms in charismatic species research: Seventy years of carnivore science and its implications for conservation and policy in India. BIOLOGICAL CONSERVATION . 273(109694)
Malhotra P, Jethva PN, Udgaonkar JB.  2017.  Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding.. Biochemistry. 56(31):4053-4063.
Datta V, Hannenhalli S, Siddharthan R.  2019.  ChIPulate: A comprehensive ChIP-seq simulation pipeline.. PLoS Comput Biol. 15(3):e1006921.
Yadav S, Rathod P, Alcoverro T, Arthur R.  2016.  Choice and destiny: the substrate composition and mechanical stability of settlement structures can mediate coral recruit fate in post-bleached reefs. Coral Reefs. 35(1):211-222.
Anujan K, Ratnam J, Sankaran M.  2022.  Chronic browsing by an introduced mammalian herbivore in a tropical island alters species composition and functional traits of forest understory plant communities. BIOTROPICA .
Sengupta T, Das R, Chattarji S.  2016.  Chronic but not acute immobilization stress stably enhances hippocampal CA1 metabotropic glutamate receptor dependent Long-Term Depression.. Neurosci Lett. 633:101-105.
Nishad S, Chauhan PKumar, Sowdhamini R, Ghosh A.  2021.  Chronic exposure of humans to high level natural background radiation leads to robust expression of protective stress response proteins.. Sci Rep. 11(1):1777.
Khouzam RAbou, Sharda M, Rao SPrasad, Kyerewah-Kersi SMaame, Zeinelabdin NAhmed, Mahmood AShah, Nawafleh H, Khan MSamar, Venkatesh GHassan, Chouaib S.  2023.  Chronic hypoxia is associated with transcriptomic reprogramming and increased genomic instability in cancer cells.. Front Cell Dev Biol. 11:1095419.
Price BWills, Allan ELouise, Marathe K, Sarkar V, Simon C, Kunte K.  2016.  The cicadas (Hemiptera: Cicadidae) of India, Bangladesh, Bhutan, Myanmar, Nepal and Sri Lanka: an annotated provisional catalogue, regional checklist and bibliography.. Biodivers Data J. (4):e8051.
Chakrabarti S, Michor F.  2020.  Circadian clock effects on cellular proliferation: Insights from theory and experiments.. Curr Opin Cell Biol. 67:17-26.
Singh AKumar, Walavalkar K, Tavernari D, Ciriello G, Notani D, Sabarinathan R.  2023.  Cis-regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers.. Mol Oncol.
Tyagi A, Godbole M, Vanak ATamim, Ramakrishnan U.  2023.  Citizen science facilitates first ever genetic detection of wolf-dog hybridization in Indian savannahs.. Ecol Evol. 13(5):e10100.
Ramachandran V, Robin VV, Tamma K, Ramakrishnan U.  2017.  Climatic and geographic barriers drive distributional patterns of bird phenotypes within peninsular India. Journal of Avian Biology. 48(5):620-630.
Harshita C, Jain D.  2016.  Cloning, expression, purification, crystallization and initial crystallographic analysis of FleN from Pseudomonas aeruginosa.. Acta Crystallogr F Struct Biol Commun. 72(Pt 2):135-8.
Silva AP, Mukherjee S, Ramakrishnan U, Fernandes C, Björklund M.  2020.  Closely related species show species-specific environmental responses and different spatial conservation needs: Prionailurus cats in the Indian subcontinent.. Sci Rep. 10(1):18705.
Yamamoto J, Adachi K, Bower JR, Matsui H, Nakaya M, Ohtani R, Puneeta P, Suzuki S, Tokioka S, Vijai D et al..  2019.  Close-up observations on the spawning behavior of a captive Japanese flying squid (Todarodes pacificus).. Sci Rep. 9(1):19739.
Singha T, Polley A, Barma M.  2023.  Clustering of lipids driven by integrin.. Soft Matter. 19(35):6814-6824.
Brilot AF, Lyon SA, Zelter A, Viswanath S, Maxwell A, MacCoss MJ, Muller EJ, Sali A, Davis TN, Agard DA.  2021.  CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation. Elife. 10
Alcala N, Goldberg A, Ramakrishnan U, Rosenberg NA.  2019.  Coalescent theory of migration network motifs.. Mol Biol Evol.
Javali A, Misra A, Leonavicius K, Acharya D, Vyas B, Sambasivan R.  2017.  Co-expression of Tbx6 and Sox2 identifies a novel transient neuromesoderm progenitor cell state.. Development.
Radhakrishnan D, Shanmukhan APallipurat, Kareem A, Aiyaz M, Varapparambathu V, Toms A, Kerstens M, Valsakumar D, Landge AN, Shaji A et al..  2020.  A coherent feed forward loop drives vascular regeneration in damaged aerial organs growing in normal developmental-context.. Development.
Malhotra S, Sowdhamini R.  2015.  Collation and analyses of DNA-binding protein domain families from sequence and structural databanks.. Mol Biosyst. 11(4):1110-8.
Bardgett RD, Bullock JM, Lavorel S, Manning P, Schaffner U, Ostle N, Chomel M, Durigan G, Fry EL, Johnson D et al..  2021.  Combatting global grassland degradation. NATURE REVIEWS EARTH & ENVIRONMENT.
Scolari VF, Lagomarsino MCosentino.  2015.  Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.. Soft Matter. 11(9):1677-87.
Eriksson O, Bhalla USingh, Blackwell KT, Crook SM, Keller D, Kramer A, Linne M-L, Saudargienė A, Wade RC, Kotaleski JHellgren.  2022.  Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows.. Elife. 11
Varudkar A, Ramakrishnan U.  2015.  Commensalism facilitates gene flow in mountains: a comparison between two Rattus species.. Heredity (Edinb). 115(3):253-61.
Griffith DM, Lehmann CER, Strömberg CAE, Parr CL, R Pennington T, Sankaran M, Ratnam J, Still CJ, Powell RL, Hanan NP et al..  2017.  Comment on "The extent of forest in dryland biomes".. Science. 358(6365)
Veldman JW, Aleman JC, Alvarado ST, T Anderson M, Archibald S, Bond WJ, Boutton TW, Buchmann N, Buisson E, Canadell JG et al..  2019.  Comment on "The global tree restoration potential".. Science. 366(6463)
Caputi L, Carradec Q, Eveillard D, Kirilovsky A, Pelletier E, Karlusich J, Vieira FRocha Jime, Villar E(, Chaffron S, Malviya S et al..  2019.  Community-Level Responses to Iron Availability in Open Ocean Plankton Ecosystems. GLOBAL BIOGEOCHEMICAL CYCLES. 33(3):391-419.
Gowda M., Ambardar S., Dighe N., Manjunath A., Shankaralingu C., Hallappa P., Harting J., Ranade S., Jagannathan L., Krishna S..  2016.  Comparative analyses of low, medium and high-resolution HLA typing technologies for human populations. Journal of Clinical & Cellular Immunology. 7
Khedkar S, Seshasayee ASai Narain.  2016.  Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology? G3 (Bethesda). 6(6):1597-606.
Toussaint EFA, Morinière J, Müller CJ, Kunte K, Turlin B, Axel Hausmann, Balke M.  2015.  Comparative molecular species delimitation in the charismatic Nawab butterflies (Nymphalidae, Charaxinae, Polyura).. Mol Phylogenet Evol. 91:194-209.
Chakravarty R, Chattopadhyay B, Ramakrishnan U.  2018.  Comparative Population Structure in Species of Bats Differing in Ecology and Morphology in the Andaman Islands, India. Acta Chiropterologica. 20(1):85-98.
Attiwilli S, Ravikanthachari N, Kunte K.  2023.  A comparison between time-constrained counts and line transects as methods to estimate butterfly diversity and monitor populations in tropical habitats. INSECT CONSERVATION AND DIVERSITY.
Vinothkumar KR, Arya C, Ramanathan G, Subramanian R.  2020.  Comparison of CryoEM and X-ray structures of dimethylformamidase.. Prog Biophys Mol Biol.
Morin DJ, Boulanger J, Bischof R, Lee DC, Ngoprasert D, Fuller AK, McLellan B, Steinmetz R, Sharma S, Garshelis D et al..  2022.  Comparison of methods for estimating density and population trends for low-density Asian bears. GLOBAL ECOLOGY AND CONSERVATION. 35(e02058)
Dias M, Pattabiraman C, Siddappa S, Gowda M, Shet A, Smith D, Muehlemann B, Tamma K, Solomon T, Jones T et al..  2019.  Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum.. Wellcome Open Res. 3:44.
Bakker JD, Price JN, Henning JA, , Sankaran M, et al.  2023.  Compositional variation in grassland plant communities. ECOSPHERE . 14(6):e4542.
Ditlev JA, Vega AR, Köster DVasco, Su X, Tani T, Lakoduk AM, Vale RD, Mayor S, Jaqaman K, Rosen MK.  2019.  A composition-dependent molecular clutch between T cell signaling condensates and actin.. Elife. 8
Lakshmanan V, N ST, Bansal D, Padubidri SV, Palakodeti D, Krishna S.  2021.  Comprehensive annotation and characterization of planarian tRNA and tRNA-derived fragments (tRFs).. RNA.
Condamine FL, Allio R, Reboud EL, Dupuis JR, Toussaint EFA, Mazet N, Hu S-J, Lewis DS, Kunte K, Cotton AM et al..  2023.  A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae).. Mol Phylogenet Evol. 183:107758.
Gupta A, Sabarinathan R, Bala P, Donipadi V, Vashisht D, Katika MRao, Kandakatla M, Mitra D, Dalal A, Bashyam MDharan.  2021.  A comprehensive profile of genomic variations in the SARS-CoV-2 isolates from the state of Telangana, India.. J Gen Virol.
Pulikkottil VVarghese, Somashekar BPriya, Bhalla US.  2021.  Computation, wiring, and plasticity in synaptic clusters.. Curr Opin Neurobiol. 70:101-112.
K Shafi M, Sowdhamini R.  2022.  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.. BMC Genomics. 23(1):516.
Patil P, Skariyachan S, Mutt E, Kaushik S.  2016.  Computational Analysis of the Domain Architecture and Substrate-Gating Mechanism of Prolyl Oligopeptidases from Shewanella woodyi and Identification of Probable Lead Molecules.. Interdiscip Sci. 8(3):284-93.
Chauhan PKumar, Sowdhamini R.  2023.  Computational analysis of the flexibility in the disordered linker region connecting LIM domains in cysteine-glycine-rich protein.. Front Genet. 14:1134509.