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Author Title [ Type(Desc)] Year
Journal Article
Shameer K, Naika MBN, K Shafi M, Sowdhamini R.  2018.  Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.. Prog Biophys Mol Biol.
Robin VV, Vishnudas CK, Gupta P, Ramakrishnan U.  2015.  Deep and wide valleys drive nested phylogeographic patterns across a montane bird community.. Proc Biol Sci. 282(1810)
Wigley BJ, Fritz H, Coetsee C.  2018.  Defence strategies in African savanna trees.. Oecologia.
Yasmin F, Saxena K, McEwen BS, Chattarji S.  2016.  The delayed strengthening of synaptic connectivity in the amygdala depends on NMDA receptor activation during acute stress.. Physiol Rep. 4(20)
Bhalla US.  2019.  Dendrites, Deep Learning, and Sequences in the Hippocampus.. Hippocampus. 29(3):239-251.
Najar AH, Sneha KM, Ashok A, Babu S, Subramaniam AG, Kannan R, Viswanath B, Purushottam M, Varghese M, Parvez S et al..  2018.  Derivation of iPSC lines from two patients with familial Alzheimer's disease from India.. Stem Cell Res. 34:101370.
Bopardikar I, Sutaria D, Sule M, Patankar V, Klinck H.  2018.  Description and classification of Indian Ocean humpback dolphin (Sousa plumbea) whistles recorded off the Sindhudurg coast of Maharashtra, India . Marine Mammel Science. 34(3):755-776.
Mirza ZA.  2017.  Description of a new species of Liocheles Sundevall, 1833 (Hormuridae) from India.. Zootaxa. 4365(2):217-230.
Mirza ZA.  2017.   Description of a new species of Liocheles Sundevall, 1833 (Hormuridae) from India. Zootaxa. 4365(2):217-230.
Mukherjee S, Dohno C, Nakatani K.  2017.  Design and Synthesis of Cyclic Mismatch-Binding Ligands (CMBLs) with Variable Linkers by Ring-Closing Metathesis and their Photophysical and DNA Repeat Binding Properties.. Chemistry. 23(47):11385-11396.
Halder S, Krishnan Y.  2015.  Design of ultrasensitive DNA-based fluorescent pH sensitive nanodevices.. Nanoscale. 7(22):10008-12.
Surana S, Shenoy AR, Krishnan Y.  2015.  Designing DNA nanodevices for compatibility with the immune system of higher organisms.. Nat Nanotechnol. 10(9):741-7.
Datta V, Siddharthan R, Krishna S.  2018.  Detection of cooperatively bound transcription factor pairs using ChIP-seq peak intensities and expectation maximization.. PLoS One. 13(7):e0199771.
Yapo C, Nair AG, Clement L, Castro LR, Kotaleski JHellgren, Vincent P.  2017.  Detection of phasic dopamine by D1 and D2 striatal medium spiny neurons.. J Physiol.
Lakshminarayanan N., Karanth K.K., Goswami V.R., Vaidyanathan S., Karanth U.  2016.  Determiants of dry season habitat use by Asian elephants in the Western Ghats of India. Journal of Zoological. 298(3):169–177.
Anil S, Rawson D, Zhang T.  2018.  Development of molecular markers for zebrafish (Danio rerio) ovarian follicle growth assessment following in-vitro culture in cryopreservation studies.. Cryobiology. 83:75-83.
Kalita U, Kumar A, Sinha A.  2018.  Diet Selection by the Capped Langur (Trachypithecus pileatus) in Hollongapar Gibbon Wildlife Sanctuary, Assam, North-East India . Folia Primatologica. 89(324):181.
Kshettry A, Vaidyanathan S., Athreya V.  2018.  Diet Selection of Leopards (Panthera pardus) in a Human-Use Landscape in North-Eastern India . Tropical Conservation Science. 11
Phalnikar K, Kunte K, Agashe D.  2018.  Dietary and developmental shifts in butterfly-associated bacterial communities.. R Soc Open Sci. 5(5):171559.
Chakravarthi A, Rajus S, Kelber A, Dacke M, Baird E.  2018.  Differences in spatial resolution and contrast sensitivity of flight control in the honeybees and .. J Exp Biol.
Karnawat V, Gogia S, Balaram H, Puranik M.  2015.  Differential Distortion of Purine Substrates by Human and Plasmodium falciparum Hypoxanthine-Guanine Phosphoribosyltransferase to Catalyse the Formation of Mononucleotides.. Chemphyschem. 16(10):2172-81.
Saha S, Lee I-H, Polley A, Groves JT, Rao M, Mayor S.  2015.  Diffusion of GPI-anchored proteins is influenced by the activity of dynamic cortical actin.. Mol Biol Cell. 26(22):4033-45.
Agavekar G, Agashe D, Economo EP.  2019.  Dimensions of ant diversity on a small tropical island. INSECT CONSERVATION AND DIVERSITY. 12(2):161-171.
Jabir MV, N Chaitanya A, Mathew M, Samanta GK.  2017.  Direct transfer of classical non-separable states into hybrid entangled two photon states.. Sci Rep. 7(1):7331.
Nordenfelt P, Moore TI, Mehta SB, Kalappurakkal JMathew, Swaminathan V, Koga N, Lambert TJ, Baker D, Waters JC, Oldenbourg R et al..  2017.  Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration.. Nat Commun. 8(1):2047.
Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.
Viswanath B, Rao NP, Narayanaswamy JC, Sivakumar PT, Kandasamy A, Kesavan M, Mehta UMeherwan, Venkatasubramanian G, John JP, Mukherjee O et al..  2018.  Discovery biology of neuropsychiatric syndromes (DBNS): a center for integrating clinical medicine and basic science.. BMC Psychiatry. 18(1):106.
Nandkishore N, Vyas B, Javali A, Ghosh S, Sambasivan R.  2018.  Divergent early mesoderm specification underlies distinct head and trunk muscle programmes in vertebrates.. Development. 145(18)
Khan I, Prakash A, Agashe D.  2016.   Divergent immune priming responses across flour beetle life stages and populations . ECOLOGY AND EVOLUTION . 6(21):7847-7855.
Krishnan A, Tamma K.  2016.  Divergent morphological and acoustic traits in sympatric communities of Asian barbets.. R Soc Open Sci. 3(8):160117.
Goyal A, Maslov S.  2018.  Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems.. Phys Rev Lett. 120(15):158102.
Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD.  2017.  A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination.. Cell. 169(1):108-119.e20.
Malhotra S, Mathew OK, Sowdhamini R.  2015.  DOCKSCORE: a webserver for ranking protein-protein docked poses.. BMC Bioinformatics. 16:127.
Ashok A, Naaz S, Kota LNarayanan, Sen S, Purushottam M, Faruq M, Kumari R, Yadav V, Kannan R, Jain S et al..  2019.  Does retinoic acid reverse cell cycle dysregulation in Alzheimer's disease lymphocytes? Asian J Psychiatr. 39:174-177.
Iyengar SB, Sumanta B., Barua D, Mishra C, Sankaran M.  2017.  A dominant dwarf shrub increases diversity of herbaceous plant communities in a Trans-Himalayan rangeland. Plant Ecology. 218(7):843–854.
Chakrabarti P, Kolay S, Yadav S, Kumari K, Nair A, Trivedi D, Raghu P.  2015.  A dPIP5K dependent pool of phosphatidylinositol 4,5 bisphosphate (PIP2) is required for G-protein coupled signal transduction in Drosophila photoreceptors.. PLoS Genet. 11(1):e1004948.
Gunage RD, Dhanyasi N, Reichert H, VijayRaghavan K.  2017.  Drosophila adult muscle development and regeneration.. Semin Cell Dev Biol.
Jayakumar S, Richhariya S, O Reddy V, Texada MJ, Hasan G.  2016.  Drosophila larval to pupal switch under nutrient stress requires IP3R/Ca(2+) signalling in glutamatergic interneurons.. Elife. 5
Yadav S, Cockcroft S, Raghu P.  2016.  The Drosophila photoreceptor as a model system for studying signalling at membrane contact sites.. Biochem Soc Trans. 44(2):447-51.
Oli CBahadur, Panthi S, Subedi N, Ale G, Pant G, Khanal G, Bhattarai S.  2018.  Dry season diet composition of four-horned antelope in tropical dry deciduous forests, Nepal.. PeerJ. 6:e5102.
Sen S, Goluguri RReddy, Udgaonkar JB.  2017.  A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Krishnan L, Barua D, Sankaran M.  2019.  Dry-forest tree species with large seeds and low stem specific density show greater survival under drought. JOURNAL OF TROPICAL ECOLOGY. 35(1):26-33.
Richhariya S, Jayakumar S, Sukumar SKumar, Hasan G.  2018.  dSTIM- and Ral/Exocyst-Mediated Synaptic Release from Pupal Dopaminergic Neurons Sustains Flight.. eNeuro. 5(3)
Park DEsther, Cheng J, Berrios C, Montero J, Cortés-Cros M, Ferretti S, Arora R, Tillgren ML, Gokhale PC, DeCaprio JA.  2019.  Dual inhibition of MDM2 and MDM4 in virus-positive Merkel cell carcinoma enhances the p53 response.. Proc Natl Acad Sci U S A. 116(3):1027-1032.
Tomar A, Polygalov D, Chattarji S, McHugh TJ.  2015.  The dynamic impact of repeated stress on the hippocampal spatial map.. Hippocampus. 25(1):38-50.
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Wang ET, J Taliaferro M, Lee J-A, Sudhakaran IP, Rossoll W, Gross C, Moss KR, Bassell GJ.  2016.  Dysregulation of mRNA Localization and Translation in Genetic Disease.. J Neurosci. 36(45):11418-11426.
Rahman MMostafizur, Callaghan CK, Kerskens CM, Chattarji S, O'Mara SM.  2016.  Early hippocampal volume loss as a marker of eventual memory deficits caused by repeated stress.. Sci Rep. 6:29127.
Khan I, Agashe D, Rolff J.  2017.  Early-life inflammation, immune response and ageing.. Proc Biol Sci. 284(1850)
Marthews T.R, Nelaballi S., Ratnam J., Sankaran M..  2015.  Ecosystem monitoring and forest census studies in South Asia (Meeting Report). Current Science. 180:1779–1782.
Nussinov R, Udgaonkar JB.  2016.  Editorial overview: Folding and binding: Dynamic conformational heterogeneity is pivotal to cell life.. Curr Opin Struct Biol. 36:iv-vi.
Spang A, Mayor S.  2018.  Editorial Overview: Membranes and organelles: rethinking membrane structure, function and compartments.. Curr Opin Cell Biol. 53:A1-A3.
Sowdhamini R, Mizuguchi K.  2017.  Editorial-Sequences and topology.. Curr Opin Struct Biol.
Sreekar R, Srinivasan U, Mammides C, Chen J, Goodale UManage, Kotagama SWimalaband, Sidhu S, Goodale E.  2015.  The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India.. Sci Rep. 5:11569.
Burrows M, Ghosh A, Yeshwanth HM, Dorosenko M, Sane SP.  2019.  Effectiveness and efficiency of two distinct mechanisms for take-off in a derbid planthopper insect.. J Exp Biol. 222(Pt 2)
Hansen S, Krishna S, Semsey S, Svenningsen SLo.  2015.  Effects of Four Different Regulatory Mechanisms on the Dynamics of Gene Regulatory Cascades.. Sci Rep. 5:12186.
Varma V, Catherin AM, Sankaran M.  2018.  Effects of increased N and P availability on biomass allocation and root carbohydrate reserves differ between N-fixing and non-N-fixing savanna tree seedlings.. Ecol Evol. 8(16):8467-8476.
Varma V, Iyengar SB, Sankaran M.  2016.  Effects of nutrient addition and soil drainage on germination of N-fixing and non-N-fixing tropical dry forest tree species . Plant Ecology. 217(1043–1054):1043–1054.
Brocke E, Bhalla US, Djurfeldt M, Kotaleski JHellgren, Hanke M.  2016.  Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations.. Front Comput Neurosci. 10:97.
Husain K, Rao M.  2017.  Emergent Structures in an Active Polar Fluid: Dynamics of Shape, Scattering, and Merger.. Phys Rev Lett. 118(7):078104.
Hemalatha A, Prabhakara C, Mayor S.  2016.  Endocytosis of Wingless via a dynamin-independent pathway is necessary for signaling in Drosophila wing discs.. Proc Natl Acad Sci U S A.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Neelamraju S, Gosavi S, Wales DJ.  2018.  Energy Landscape of the Designed Protein Top7.. J Phys Chem B.
Ramakrishnan G, Ochoa-Montaño B, Raghavender US, Mudgal R, Joshi AG, Chandra NR, Sowdhamini R, Blundell TL, Srinivasan N.  2015.  Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: insights into structure and function.. Tuberculosis (Edinb). 95(1):14-25.
KKrishnadas M, Kumar A, Comita LS.  2016.  Environmental gradients structure tropical tree assemblages at the regional scale . JOURNAL OF VEGETATION SCIENCE . 27(6):1117-1128.
Sane SP.  2017.  Eppur si vola (and yet it flies).. J Exp Biol. 220(Pt 4):514-516.
Nayak G, Honguntikar SD, Kalthur SGuruprasad, D'Souza ASylvan, Mutalik S, Setty MM, Kalyankumar R, Krishnamurthy H, Kalthur G, Adiga SKumar.  2016.  Ethanolic extract of Moringa oleifera Lam. leaves protect the pre-pubertal spermatogonial cells from cyclophosphamide-induced damage.. J Ethnopharmacol. 182:101-9.
Bendigiri C, Harini K, Yenkar S, Zinjarde S, Sowdhamini R, RaviKumar A.  2018.  Evaluating Ylehd, a recombinant epoxide hydrolase from Yarrowia lipolytica as a potential biocatalyst for the resolution of benzyl glycidyl ether. RSC ADVANCES. 8(23):12918-12926.
Br A, Dovih P, Ramakrishnan U, Liang E, Mendenhall I, Hong DLWen, Smith JGD.  2019.  Evidence of filovirus and henipavirus in bats and bat harvesters, India. International Journal of Infectious Diseases. 79(Suppl.1):60.
Suratekar R, Panda A, Padinjat R, Krishna S.  2018.  Evidence of sinks and sources in the phospholipase C activated PIP2 cycle.. FEBS Lett.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Joshi J, Prakash A, Kunte K.  2017.  Evolutionary Assembly of Communities in Butterfly Mimicry Rings.. Am Nat. 189(4):E58-E76.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Ganesh S, P HAhmed, Nadella RKumar, More RPrabhakar, Sheshadri M, Viswanath B, Rao M, Jain S, Mukherjee O.  2019.  Exome sequencing in families with severe mental illness identifies novel and rare variants in genes implicated in Mendelian neuropsychiatric syndromes.. Psychiatry Clin Neurosci. 73(1):11-19.
Saxena K, Webster J, Hallas-Potts A, Mackenzie R, Spooner PA, Thomson D, Kind P, Chatterji S, Morris RGM.  2018.  Experiential contributions to social dominance in a rat model of fragile-X syndrome.. Proc Biol Sci. 285(1880)
Khan I, Prakash A, Agashe D.  2017.  Experimental evolution of insect immune memory versus pathogen resistance.. Proc Biol Sci. 284(1869)
Mandalaparthy V, Sanaboyana VRamana, Rafalia H, Gosavi S.  2018.  Exploring the effects of sparse restraints on protein structure prediction.. Proteins. 86(2):248-262.
Godbole A, Dubey AK, Mitra R, Reddy PS, Mathew MK.  2015.  Expression and purification of OsVDAC4.. Methods Enzymol. 556:51-75.
Sengupta I, Udgaonkar JB.  2017.  Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Manjila SB, Kuruvilla M, Ferveur J-F, Sane SP, Hasan G.  2019.  Extended Flight Bouts Require Disinhibition from GABAergic Mushroom Body Neurons.. Curr Biol. 29(2):283-293.e5.
Rahman MMostafizur, Shukla A, Chattarji S.  2018.  Extinction recall of fear memories formed before stress is not affected despite higher theta activity in the amygdala.. Elife. 7
Palavalli-Nettimi R, Sane SP.  2018.  Fairyflies.. Curr Biol. 28(23):R1331-R1332.
Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE, Brangwynne CP.  2017.  Farming and public goods production in Caenorhabditis elegans populations.. Proc Natl Acad Sci U S A. 114(9):2289-2294.
Banerjee A, Grazon C, Nadal B, Pons T, Krishnan Y, Dubertret B.  2015.  Fast, Efficient, and Stable Conjugation of Multiple DNA Strands on Colloidal Quantum Dots.. Bioconjug Chem. 26(8):1582-9.
Weinert T, Olieric V, Waltersperger S, Panepucci E, Chen L, Zhang H, Zhou D, Rose J, Ebihara A, Kuramitsu S et al..  2015.  Fast native-SAD phasing for routine macromolecular structure determination.. Nat Methods. 12(2):131-3.
Kumar S, Mahajan S, Jain S.  2018.  Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis.. PLoS One. 13(10):e0203311.
Bhaumik V., Kunte K.  2018.   Female butterflies modulate investment in reproduction and flight in response to monsoon-driven migrations. OIKOS. 127 (2):285-296.
Khan I, Prakash A, Issar S, Umarani M, Sasidharan R, Masagalli JN, Lama P, Venkatesan R, Agashe D.  2018.  Female Density-Dependent Chemical Warfare Underlies Fitness Effects of Group Sex Ratio in Flour Beetles. American Naturalist.
Honda A, Kita T, Seshadri SVidhya, Misaki K, Ahmed Z, Ladbury JE, Richardson GP, Yonemura S, Ladher RK.  2018.  FGFR1-mediated protocadherin-15 loading mediates cargo specificity during intraflagellar transport in inner ear hair-cell kinocilia.. Proc Natl Acad Sci U S A. 115(33):8388-8393.
Viswan NA, HarshaRani GVani, Stefan MI, Bhalla US.  2018.  FindSim: A Framework for Integrating Neuronal Data and Signaling Models.. Front Neuroinform. 12:38.
Mirza ZA, Gowande GG, Patil R, Ambekar M, Patel H.  2018.  First appearance deceives many: disentangling the species complex using an integrated approach.. PeerJ. 6:e5341.
Caleb JTD, Sanap R.V., Patel KG, Sudhikumar AV.  2018.  First description of the female of Chrysilla volupe (Karsch, 1879) (Araneae: Salticidae: Chrysillini) from India, with notes on the species’ distribution and life history. Arthropoda Selecta. 27(2):143-153.
Deshpande K., Gangal M, Kelkar N.  2016.  First record of a bat from the Lakshadweep archipelago, southwestern India. Mammalia. 80(2):223-225.
Jumani S, Rao S, Kelkar N.  2018.  Fish community responses to stream flow alterations and habitat modifications by small hydropower projects in the Western Ghats biodiversity hotspot, India. Aquatic Conservation: Marine and Freshwater Ecosystems. 28(4):9792-993.
Nandwani N, Surana P, Negi H, Mascarenhas NM, Udgaonkar JB, Das R, Gosavi S.  2019.  A five-residue motif for the design of domain swapping in proteins.. Nat Commun. 10(1):452.
Jain A., Kunte K, Webb E.L..  2016.  Flower specialization of butterflies and impacts of non-native flower use in a transformed tropical landscape. Biological Conservation. 201:84–191.
Thutupalli S, Geyer D, Singh R, Adhikari R, Stone HA.  2018.  Flow-induced phase separation of active particles is controlled by boundary conditions.. Proc Natl Acad Sci U S A.
Roy S, Mathew MK.  2018.  Fluid flow modulates electrical activity in cardiac hERG potassium channels.. J Biol Chem.
Ravi P, Trivedi D, Hasan G.  2018.  FMRFa receptor stimulated Ca2+ signals alter the activity of flight modulating central dopaminergic neurons in Drosophila melanogaster.. PLoS Genet. 14(8):e1007459.
D'Souza MNinochka, Gowda NKumar Chan, Tiwari V, Babu ROttakandat, Anand P, Dastidar SGhosh, Singh R, Selvaraja B, Pal R, Ramesh A et al..  2018.  FMRP Interacts with C/D Box snoRNA in the Nucleus and Regulates Ribosomal RNA Methylation.. iScience. 9:399-411.

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