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2025
Kaushik R, Pandey S, Prakash A, Ganatra F, Abe T, Kiyonari H, Ladher RK.  2025.  Role of Pcdh15 in the development of intrinsic polarity of inner ear hair cells.. PLoS Genet. 21(8):e1011825.
Da W, Rana SK, Bawa K, Kunte K, Wang Z.  2025.  Roof of the world: Home and border in the genomic era. Molecular Ecology Resources.
Sondhi S, Kallies A, Singh RPratap, Roy ABasu, Kunte K.  2025.  Scientific Note: The first confirmed record of the genus Scoliokona Kallies & Arita, 1998 (Lepidoptera: Sesiidae: Sesiinae) from India. Tropical Lepidoptera Research. 35
VijayRaghavan K.  2025.  A Scientist Who Created Institutions With a Lasting Culture. Reson . 30, 1037–1053.
VijayRaghavan K..  2025.  A Scientist Who Created Institutions With a Lasting Culture. Resonance. 30:1037–1053.
9. S K, SD K, H K, LB N, V V, R S, E G-W, BS H, RM B.  2025.  Sensing volatiles throughout the body: geographic- and tissue-specific olfactory receptor expression in the fig wasp.
Lall S, Balaram P, Mathew MK, Gosavi S.  2025.  Sequence of the SARS-CoV-2 Spike Transmembrane Domain Encodes Conformational Dynamics.. J Phys Chem B. 129(1):194-209.
Srinivasan DJ, Kapgal V, Morris RGM, Chattarji S.  2025.  Social dominance in rats is a determinant of susceptibility to stress.. Proc Natl Acad Sci U S A. 122(19):e2412314122.
Yau EYu Hin, Jones EE, Tsang TPak Nok, Xing S, Corlett RT, Roehrdanz P, Lohman DJ, Lee AKai Chi, Hai CWai Ching, Chowdhury S et al..  2025.  Spatial occurrence records and distributions of tropical Asian butterflies.
Borer E, Seabloom E, Slette I, Wilfahrt P, Asmus A, Sankaran M.  2025.  Species cover, community biomass, and richness in global grasslands from NutNet (2007–2023): Dominant species predict plant richness and biomass in global grasslands.
Reddy PPurushotha, Phale A, Das R.  2025.  Structural analysis of genetic variants of the human tumor suppressor Palb2 coiled-coil domain.. Biosci Rep.
, Kasinathan S, Bhat K, Ratnam J, Sankaran M, Mudappa D, Raman T.RShankar, Osuri AM.  2025.  Structure and dynamics of secondary and mature rainforests: insights from South Asian long-term monitoring plots. Plant Ecology & Diversity.
Virdi S, Sane SP.  2025.  Structure of the Femoral Chordotonal Organ in the Oleander Hawkmoth, Daphnis nerii.. The Journal of Comparative Neurology. 533(2):e70022.
Kumar M, Sane S, Murali A, Thutupalli S.  2025.  Temperature switchable self-propulsion activity of liquid crystalline microdroplets.. Soft Matter.
Laurance WF, Ramakrishnan U.  2025.  Tiger turnaround as populations grow in India.. Nature. 640(8059):603-604.
Aniruddh S, Mayank K, Jayashree R, Vasant S, Mahesh S.  2025.  Towards Greener Pastures: An Overview of Pastoral Economics, Policies and Ecologies in India. Economic & Political Weekly.
Chhattani H, Harihar A, Dean R, Yadav A, Patel K, Rana D, Pandit A, Shukla SKumar, Rahim V, Ramakrishnan U.  2025.  Trace DNA from kill sites identifies individual predators. Biological Conservation. 307:111117.
Prasad M, Shetty P, Pal AKumar, Rigó G, Kant K, Zsigmond L, Nagy I, Shivaprasad PV, Szabados L.  2025.  Transcriptional and epigenomic changes in response to PEG-triggered osmotic stress in rapeseed (Brassica napus L.).. J Exp Bot.
CHANDRAN AYIKKARAVIVEK, SAWANT DATTAPRASAD, CHANDRAN REJI, KOPARDE PANKAJ, JOSE SUBINKANIYAMATT, Kunte K.  2025.  Two new species of Merogomphus Martin, 1904 (Odonata: Anisoptera: Gomphidae) from the Western Ghats, India. Zootaxa. 5588(2):201-226.
Ravichandran A, Nallusamy S, Selvamani SBabu, Sowdhamini R.  2025.  Uncovering the transcription factors and metabolic pathways unique to proso millet and foxtail millet under salt stress through a comparative transcriptome approach.
Majumdar S, Bammidi LSowjanya, Naik HC, Manhas A, Baro R, Kalita A, Naskar AJyoti, Nidharshan S, Bariha GS, Notani D et al..  2025.  upstream deletion leads to dysregulation of and autosomal gene expression.. Genome Res.
Dhingra S, Téletchéa S, Sowdhamini R, Sanejouand Y-H, de Brevern AG, Cadet F, Offmann B.  2025.  Using protein blocks to build custom fragment libraries from protein structures.. Biochimie.
2024
Bohra D, Islam Z, Nidharshan S, Mazumder A, Notani D.  2024.  Acute Activation of Genes Through Transcriptional Condensates Impact Non-target Genes in a Chromatin Domain. eLife.
Vaishnav MS, Kumari N, Srikanta S, Simha V, Krishnaswamy PR, Balaram P, Bhat N.  2024.  Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications.. Metab Syndr Relat Disord. 22(5):372-384.
Viswanath S.  2024.  AlphaFold opens the doors to deorphanizing secreted proteins.. Cell Syst. 15(11):1000-1001.
Jhaveri R, Cannanbilla L, Bhat KSArpitha, Sankaran M, Krishnadas M.  2024.  Anatomical traits explain drought response of seedlings from wet tropical forests.. Ecol Evol. 14(9):e70155.
Rathod SG, Singh A, Mantri VA.  2024.  Ascertaining the spatiotemporal variations in seaweed assemblages associated with the endemic seaweed Ulva ovata along selected locations of the Gulf of Khambhat, India. AQUATIC ECOLOGY.
Cherian P, Kshirsagar J, Neekhra B, Deshkar G, Hayatnagarkar H, Kapoor K, Kaski C, Kathar G, Khandekar S, Mookherjee S et al..  2024.  BharatSim: An agent-based modelling framework for India.. PLoS Comput Biol. 20(12):e1012682.
Collins DM, Janardan V, Barneda D, Anderson KE, Niewczas I, Taylor D, Qiu D, Jessen HJ, Lopez-Clavijo AF, Walker S et al..  2024.  CDS2 expression regulates de novo phosphatidic acid synthesis.. Biochem J. 481(20):1449-1473.
Sreepadmanabh M, Ganesh M, Sanjenbam P, Kurzthaler C, Agashe D, Bhattacharjee T.  2024.  Cell shape affects bacterial colony growth under physical confinement.. Nat Commun. 15(1):9561.
Raghu P, Sharma Y, Devi ABhuvanendr, Krishnan H.  2024.  Challenges and opportunities for discovering the biology of rare genetic diseases of the brain.. J Biosci. 49
Zhang C, Joseph AMary, Casini L, Collier J, Badrinarayanan A, Manley S.  2024.  Chromosome organization shapes replisome dynamics in Caulobacter crescentus.. Nat Commun. 15(1):3460.
Joshi A, Ratnam J, Paramjyothi H, Sankaran M.  2024.  Climate and vegetation collectively drive soil respiration in montane forest-grassland landscapes of the southern Western Ghats, India. Journal of Tropical Ecology. 40
Carvalho APaula S, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT et al..  2024.  Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature.. iScience. 27(4):109336.
Nayak S, Regati DReddy, Sowdhamini R.  2024.  Computational analysis of human gut microbial prolyl oligopeptidases (POPs) reveal candidate genes as therapeutics for celiac disease.. Sci Rep. 14(1):19641.
Sharma A, Chandrashekar CR, Krishna S, Sowdhamini R.  2024.  Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2.. J Mol Biol. 436(19):168716.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Adamala KP, Agashe D, Belkaid Y, Bittencourt DMatias de, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM et al..  2024.  Confronting risks of mirror life.. Science. 386(6728):1351-1353.
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Thutupalli S.  2024.  The cost of cellular patterns. Nature Physics. 20:1704–1705.
Hussain N, Apotikar A, Pidathala S, Mukherjee S, Burada AP, Sikdar SK, Vinothkumar KR, Penmatsa A.  2024.  Cryo-EM structures of pannexin 1 and 3 reveal differences among pannexin isoforms.. Nat Commun. 15:2942.
Narah J, Streinzer M, Chakravorty J, Megu K, Spaethe J, Brockmann A, Schmitt T.  2024.  Cuticular Hydrocarbon Profiles of Himalayan Bumble Bees (Hymenoptera: Bombus Latreille) are Species-Specific and Show Elevational Variation.. J Chem Ecol.
Joshi S, Sarkar V, Sawant D, Pawar U, Kunte K.  2024.  Description of Protosticta khasia sp. nov. and Yunnanosticta siangi sp. nov., with new records of P. samtsensis Gurung & Phan, 2023 from Northeast India (Odonata: Zygoptera: Platystictidae).. Zootaxa. 5448(3):348-370.
Sreepadmanabh M, Arun AB, Bhattacharjee T.  2024.  Design approaches for 3D cell culture and 3D bioprinting platforms.. Biophys Rev (Melville). 5(2):021304.
Sawant D, Joshi S, Pawar U, Naik P, Khan F, Nawge V, Kunte K.  2024.  Devadatta adii sp. nov. (Odonata: Zygoptera: Devadattidae) from Upper Siang District, Arunachal Pradesh, India.. Zootaxa. 5519(4):571-589.
Sawant D, Joshi S, Pawar U, Naik P, Khan F, Nawge V, Kunte K.  2024.  Devadatta adii sp. nov. (Odonata: Zygoptera: Devadattidae) from Upper Siang District, Arunachal Pradesh, India. ZOOTAXA. 5519(4):571-589.
Kumar S, Ghosh S, Shanavas N, Sivaramakrishnan V, Dwari M, Das S.  2024.  Development of pial collaterals by extension of pre-existing artery tips.. Cell Rep. 43(10):114771.
Mishra S, Bansal M, Prasad V, Singh VPartap, Murthy S, Parmar S, Utescher T, Khangar R.  2024.  Did the Deccan Volcanism impact the Indian flora during the Maastrichtian? EARTH-SCIENCE REVIEWS. 258(104950)
Rana D, Sartor CC, Chiaverini L, Cushman SA, Kaszta Z, Ramakrishnan U., Macdonald DW.  2024.  Differentially biased sampling strategies reveal the non-stationarity of species distribution models for Indian small felids. ECOLOGICAL MODELLING. 493
Agrawal K, Prabhakar S, Bakthavachalu B, Chaturvedi D.  2024.  Distinct developmental patterns in Anopheles stephensi organ systems.. Dev Biol. 508:107-122.
Sanjenbam P, Agashe D.  2024.  Divergence and convergence in epiphytic and endophytic phyllosphere bacterial communities of rice landraces.. mSphere. :e0076524.
Khan A, Sil M, Thekaekara T, Garg KM, Sinha I, Khurana R, Sukumar R, Ramakrishnan U.  2024.  Divergence and serial colonization shape genetic variation and define conservation units in Asian elephants.. Curr Biol.
Todisco V, Basu DNath, Prosser SWJ, Russell S, Mutanen M, Zilli A, Huertas B, Kunte K, Vane-Wright R.  2024.  DNA barcodes from over-a-century-old type specimens shed light on the taxonomy of a group of rare butterflies (Lepidoptera: Nymphalidae: Calinaginae).. PLoS One. 19(7):e0305825.
Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R.  2024.  Dynamic clustering of active rings. Phys. Rev. Research. 6(L012038 )
Rajput V, Das R, Pramanik R, Nannaware K, Sushma Y, Taji N, Rajput V, Rajkhowa R, Pacharne P, Shah P et al..  2024.  Early Detection of KP.2 SARS-CoV-2 Variant using Wastewater-based Genomic Surveillance in Pune, Maharashtra, India.. J Travel Med.
Kaur K, Chandel M, Munikrishnappa VKT, Kumar P, Sahu BK, Ahamed M, Manjunath S, Gorantla M, Olsson S, Muthusamy E et al..  2024.  Ecofriendly agriculture pest control using pheromone packed programed nanovolcanoes framed by graphene oxide. CLEAN TECHNOLOGIES AND ENVIRONMENTAL POLICY.
Kumar M, Murali A, Subramaniam AGopal, Singh R, Thutupalli S.  2024.  Emergent dynamics due to chemo-hydrodynamic self-interactions in active polymers.. Nat Commun. 15(1):4903.
Simões deOliveira L, O'Leary HE, Nawaz S, Loureiro R, Davenport EC, Baxter P, , Dando O, Perkins E, Peltier J et al..  2024.  Enhanced hippocampal LTP but normal NMDA receptor and AMPA receptor function in a rat model of CDKL5 deficiency disorder.. Mol Autism.. 15(1):28.
Chaturvedi N, Chatterjee P.  2024.  Evolutionary Adaptation in Heterogeneous and Changing Environments.. Evolution.
Jean-François F, Pratibha S, Stéphane F, Enisa A, Fabrice N, Bernard M, Deepa A, Claude E.  2024.  Experimental Evolution Induced by Maternal Post-copulatory Factors in Drosophila.. Behav Genet.
Maes S.L, Perring M.P, Cohen R., Akinnifesi F.K, Bargues-Tobella A., Bastin J.-f., Bauters M., Bernardino P.N, Brancalion P.HS, Bullock J.M et al..  2024.  Explore before you restore: Incorporating complex systems thinking in ecosystem restoration. JOURNAL OF APPLIED ECOLOGY .
Premageetha GThambraRaj, Vinothkumar KR, Bose S.  2024.  Exploring advances in single particle CryoEM with apoferritin: From blobs to true atomic resolution.. Int J Biochem Cell Biol. 169:106536.
Neethu K.C, Pushpadass HA, Franklin MEE, Krishnamurthy H..  2024.  Exploring oil absorption and distribution in immersion-fried pantoa (Indian dairy dessert): effects of frying media. Journal of Food Science and Technology.
Yadav S, Vinothkumar KR.  2024.  Factors affecting macromolecule orientations in thin films formed in cryo-EM.. Acta Crystallogr D Struct Biol. 80(Pt 7):535-550.
Chaba Z, Jain I, Tran PT.  2024.  Fission yeast spindle dynamics and chromosome segregation fidelity show distinct thermosensitivity.. MicroPubl Biol. 2024
Gupta D, Sane SP, Arakeri JH.  2024.  Generating controlled gust perturbations using vortex rings.. PLoS One. 19(7):e0305084.
Grossen C, Ramakrishnan U.  2024.  Genetic load.. Curr Biol. 34(24):R1216-R1220.
Mishra S., Manohar V., Chandel S., Manoj T., Bhattacharya S., Hegde N., Nath V.R., Krishnan H., Wendling C., Mattia T.D. et al..  2024.  A genetic screen to uncover mechanisms underlying lipid transfer protein function at membrane contact sites . Life Sci Alliance. 7(6):e202302525.
Panda S, Anandan A, K Shafi M, Naika MBN, Sowdhamini R, Vanishree G, Sarkar S, Travis AJ, Norton GJ, Price AH.  2024.  Genome-wide association study reveals effect of nsSNPs on candidate genes in rice during iron deficiency.. Funct Integr Genomics. 24(6):198.
Raju A, Siggia ED.  2024.  A geometrical model of cell fate specification in the mouse blastocyst.. Development. 151(8)
Marathe K, Maddison WP, Kunte K.  2024.  Ghatippuspaschima, a new species and genus of plexippine jumping spider from the Western Ghats of India (Salticidae, Plexippini, Plexippina).. Zookeys. 1191:89-103.
Tanaka S, Matsushita Y, Hanaki Y, Higaki T, Kamamoto N, Matsushita K, Higashiyama T, Fujimoto K, Ueda M.  2024.  HD-ZIP IV genes are essential for embryo initial cell polarization and the radial axis formation in Arabidopsis.. Curr Biol.
Dua N, Badrinarayanan A.  2024.  Heteroplasmy in action: tracking mtDNA segregation dynamics.. EMBO J.
Sundaramurthy V, Haldar J.  2024.  Honoring a Legacy: "Vigyan Ratna" Prof. G. Padmanaban.. ACS Infect Dis.
Chakrabarti S.  2024.  Identifying memory genes in cancer drug tolerance.. Nat Rev Cancer.
Werner S, Okenve-Ramos P, Hehlert P, Zitouni S, Priya P, Mendonça S, Sporbert A, Spalthoff C, Göpfert MC, Jana SChandra et al..  2024.  IFT88 maintains sensory function by localising signalling proteins along cilia.. Life Sci Alliance. 7(5)
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Sabarinathan R.  2024.  Immunoproteasome as a biomarker for immunotherapy.. Nat Rev Cancer.
Saha S, Krishnan H, Raghu P.  2024.  IMPA1 dependent regulation of phosphatidylinositol 4,5-bisphosphate and calcium signalling by lithium.. Life Sci Alliance. 7(2):e202302425.
Jain H, Ghosh S.  2024.  Imprinting reversible deformations on a compressed soft rod network. SOFT MATTER. 20(26)
Bhaumik V, Kumar A, Ratnam J.  2024.  Indian wildlife ecology comes of age.. Nat Ecol Evol.
Treidel LA, Deem KD, Salcedo MK, Dickinson MH, Bruce HS, Darveau C-A, Dickerson BH, Ellers O, Glass JR, Gordon CM et al..  2024.  Insect Flight: State of the Field and Future Directions.. Integr Comp Biol.
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y et al..  2024.  An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome.. Proc Natl Acad Sci U S A. 121(33):e2318601121.
Parvathy J, Yazhini A, Srinivasan N, Sowdhamini R.  2024.  Interfacial residues in protein-protein complexes are in the eyes of the beholder.. Proteins.
Babu NKrishna, Sreepadmanabh M, Dutta S, Bhattacharjee T.  2024.  Interplay of geometry and mechanics in epithelial wound healing.. Phys Rev E. 110(5-1):054411.
Dewan A, Jain C, Das M, Tripathi A, Sharma AKumar, Singh H, Malhotra N, Seshasayee ASai Narain, Chakrapani H, Singh A.  2024.  Intracellular peroxynitrite perturbs redox balance, bioenergetics, and Fe-S cluster homeostasis in Mycobacterium tuberculosis.. Redox Biol. 75:103285.
Hasan G.  2024.  IPRs and nSOCE-Tied Together at Two Ends.. Contact (Thousand Oaks). 7:25152564241231092.
Lu H, Twan WKyaw, Ikawa Y, Khare V, Mukherjee I, Schou KBødtker, Chua KXin, Aqasha A, Chakrabarti S, Hamada H et al..  2024.  Localisation and function of key axonemal microtubule inner proteins and dynein docking complex members reveal extensive diversity among vertebrate motile cilia.. Development. 151(14)
Varma A, Udupa S, Sengupta M, Ghosh PKumar, Thirumalai V.  2024.  A machine-learning tool to identify bistable states from calcium imaging data.. J Physiol.
Viswan NAnn, Tribut A, Gasparyan M, Radulescu O, Bhalla US.  2024.  Mathematical basis and toolchain for hierarchical optimization of biochemical networks.. PLoS Comput Biol. 20(12):e1012624.
Singha D, Patidar A, Pal S, Tyagi K, Kumar V.  2024.  Mitochondrial genetic diversity of pest and vector species, Frankliniella schultzei (Thripidae: Thripinae).. Mol Biol Rep. 52(1):55.
Jha S, Bose S, Vinothkumar KR.  2024.  Modeling Ligands into Maps Derived from Electron Cryomicroscopy.. J Vis Exp. (209)
Pasani S, Menon KS, Viswanath S.  2024.  The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling.. Protein Sci. 33(12):e5217.
Chaitanya P, Vijayaraghavareddy P, Lekshmy S, Spoorthi N, Math RGH, Shinde DD, Struik PC, Sreeman S.  2024.  Molecular basis of distinct responses to drought between rice and wheat genotypes. Environmental and Experimental Botany. 221:105734.
Srivastava V, Patra K, Pai H, Aguilar-Pontes MVictoria, Berasategui A, Kamble A, Di Pietro A, Redkar A.  2024.  Molecular Dialogue During Host Manipulation by the Vascular Wilt Fungus .. Annu Rev Phytopathol. 62(1):97-126.
Pramanik R, Nannaware K, Malik V, Shah P, Sangewar P, Gogate N, Shashidhara LS, Boargaonkar R, Patil D, Kale S et al..  2024.  Monitoring Influenza A (H1N1, H3N2), RSV, and SARS-CoV-2 Using Wastewater-Based Epidemiology: A 2-Year Longitudinal Study in an Indian Megacity Covering Omicron and Post-Omicron Phases.. Food Environ Virol. 17(1):3.
Singh N, Kaushik R, Prakash A, Saini SSingh, Garg S, Adhikary A, Ladher RK.  2024.  Mosaic Atoh1 deletion in the chick auditory epithelium reveals a homeostatic mechanism to restore hair cell number.. Dev Biol. 516:35-46.
Prusty AD, Sane SP.  2024.  The motor apparatus of head movements in the Oleander hawkmoth (Daphnis nerii, Lepidoptera).. J Comp Neurol. 532(1):e25577.
Sane SP, Wehling R, Daniel T.  2024.  Multisensory integration in insect flight control.. Biol Lett. 20(1):20230565.
Garushyants SK, Sane M, Selifanova MV, Agashe D, Bazykin GA, Gelfand MS.  2024.  Mutational signatures in wild type Escherichia coli strains reveal predominance of DNA polymerase errors.. Genome Biol Evol.

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