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2023
Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R.  2023.  Active dynamics of linear chains and rings in porous media.. J Chem Phys. 159(1)
Islam Z, Saravanan B, Walavalkar K, Farooq U, Singh AKumar, Sabarinathan R, Thakur J, Pandit A, Henikoff S, Notani D.  2023.  Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.. Genome Res.
Datta S, Rashid Z, Naskar S, Chattarji S.  2023.  Administration of the glutamate-modulating drug, riluzole, after stress prevents its delayed effects on the amygdala in male rats.. PNAS Nexus. 2(6):pgad166.
Prakash A, Agashe D, Khan I.  2023.  Alteration of diet microbiota limits the experimentally evolved immune priming response in flour beetles, but not pathogen resistance.. J Evol Biol.
Prabantu VManjveekar, Tandon H, Sandhya S, Sowdhamini R, Srinivasan N.  2023.  The alteration of structural network upon transient association between proteins studied using graph theory.. Proteins.
Rajarajan S, Snijesh VP, Anupama CE, Nair MG, Mavatkar AD, Naidu CM, Patil S, Nimbalkar VP, Alexander A, Pillai M et al..  2023.  An androgen receptor regulated gene score is associated with epithelial to mesenchymal transition features in triple negative breast cancers.. Transl Oncol. 37:101761.
Sharma SDas, Reddy BKumar, Pal R, Ritakari TE, Cooper JD, Selvaraj BT, Kind PC, Chandran S, Wyllie DJA, Chattarji S.  2023.  Astrocytes mediate cell non-autonomous correction of aberrant firing in human FXS neurons.. Cell Rep. 42(4):112344.
Nair A, Harshith CYY, Narjala A, Shivaprasad PV.  2023.  Begomoviral beta C1 orchestrates organellar genomic instability to augment viral infection. PLANT JOURNAL .
Nair A, Harshith CY, Narjala A, Shivaprasad PV.  2023.  Begomoviral βC1 orchestrates organellar genomic instability to augment viral infection.. Plant J.
Choo BPeide, Mok Y, Oh HChoon, Patanaik A, Kishan K, Awasthi A, Biju S, Bhattacharjee S, Poh Y, Wong HSiang.  2023.  Benchmarking performance of an automatic polysomnography scoring system in a population with suspected sleep disorders.. Front Neurol. 14:1123935.
Sharma A, Krishna S, Sowdhamini R.  2023.  Bioinformatics analysis of mutations sheds light on the evolution of Dengue NS1 protein with implications in the identification of potential functional and druggable sites.. Mol Biol Evol.
Shee S, Veetil RT, Mohanraj K, Das M, Malhotra N, Bandopadhyay D, Beig H, Birua S, Niphadkar S, Nagarajan SNarayanan et al..  2023.  Biosensor-integrated transposon mutagenesis reveals as a coordinator of redox homeostasis in .. Elife. 12
Sanz-Paz M, van Zanten TS, Manzo C, Mivelle M, Garcia-Parajo MF.  2023.  Broadband Plasmonic Nanoantennas for Multi-Color Nanoscale Dynamics in Living Cells.. Small. :e2207977.
Krishna S, Prasad R.  2023.  Building Indian Biomedical Leadership to Bridge the Gap Between Science, Primary Health Care and Public Health. JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE .
Patel FDivan, Pinto W, Dey M, Alcoverro T, Arthur R.  2023.  Carbonate budgets in Lakshadweep Archipelago bear the signature of local impacts and global climate disturbances. CORAL REEFS .
Iyer KS, Prabhakara C, Mayor S, Rao M.  2023.  Cellular compartmentalisation and receptor promiscuity as a strategy for accurate and robust inference of position during morphogenesis. . Elife. :12:e79257.
S IMeenakshi, Rao M, Mayor S, Sowdhamini R.  2023.  A census of actin-associated proteins in humans.. Front Cell Dev Biol. 11:1168050.
Khouzam RAbou, Sharda M, Rao SPrasad, Kyerewah-Kersi SMaame, Zeinelabdin NAhmed, Mahmood AShah, Nawafleh H, Khan MSamar, Venkatesh GHassan, Chouaib S.  2023.  Chronic hypoxia is associated with transcriptomic reprogramming and increased genomic instability in cancer cells.. Front Cell Dev Biol. 11:1095419.
Singh AKumar, Walavalkar K, Tavernari D, Ciriello G, Notani D, Sabarinathan R.  2023.  Cis-regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers.. Mol Oncol.
Tyagi A, Godbole M, Vanak ATamim, Ramakrishnan U.  2023.  Citizen science facilitates first ever genetic detection of wolf-dog hybridization in Indian savannahs.. Ecol Evol. 13(5):e10100.
Singha T, Polley A, Barma M.  2023.  Clustering of lipids driven by integrin.. Soft Matter. 19(35):6814-6824.
Attiwilli S, Ravikanthachari N, Kunte K.  2023.  A comparison between time-constrained counts and line transects as methods to estimate butterfly diversity and monitor populations in tropical habitats. INSECT CONSERVATION AND DIVERSITY.
Bakker JD, Price JN, Henning JA, , Sankaran M, et al.  2023.  Compositional variation in grassland plant communities. ECOSPHERE . 14(6):e4542.
Condamine FL, Allio R, Reboud EL, Dupuis JR, Toussaint EFA, Mazet N, Hu S-J, Lewis DS, Kunte K, Cotton AM et al..  2023.  A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae).. Mol Phylogenet Evol. 183:107758.
Chauhan PKumar, Sowdhamini R.  2023.  Computational analysis of the flexibility in the disordered linker region connecting LIM domains in cysteine-glycine-rich protein.. Front Genet. 14:1134509.
Asopa A, Bhalla US.  2023.  A computational view of short-term plasticity and its implications for E-I balance.. Curr Opin Neurobiol. 81:102729.
Jaganathan D, Rajakani R, Doddamani D, Saravanan D, Pulipati S, G VHari Sunda, Sellamuthu G, Jayabalan S, Kumari K, Parthasarathy P et al..  2023.  A conserved SNP variation in the pre-miR396c flanking region in Oryza sativa indica landraces correlates with mature miRNA abundance.. Sci Rep. 13(1):2195.
Vijayasarathy M, Kumar S, Venkatesha MA, Balaram P.  2023.  Contryphan sequence diversity: Messy N-terminus processing, effects on chromatographic behaviour and mass spectrometric fragmentation.. J Proteomics. :104805.
Das M, Sreedharan S, Shee S, Malhotra N, Nandy M, Banerjee U, Kohli S, Rajmani RS, Chandra N, Seshasayee ASai Narain et al..  2023.  Cysteine desulfurase (IscS)-mediated fine-tuning of bioenergetics and SUF expression prevents hypervirulence.. Sci Adv. 9(50):eadh2858.
Vijayasarathy M, Kumar S, Das R, Balaram P.  2023.  Cysteine-free cone snail venom peptides: Classification of precursor proteins and identification of mature peptides.. J Pept Sci. :e3554.
Singh G, Kumar S, Das R.  2023.  Decoding the Assembly of Mixed and Branched Heterotypic Ubiquitin Chains.. Anal Chem. 95(26):10061-10067.
Arolkar G, Kumar SKrishna, Wang H, Gonzalez KM, Kumar S, Bishnoi B, Coronado PERios, Y Woo J, Red-Horse K, Das S.  2023.  Dedifferentiation and Proliferation of Artery Endothelial Cells Drive Coronary Collateral Development in Mice.. Arterioscler Thromb Vasc Biol.
Vaishnav MS, Kumari N, Srikanta S, Krishnaswamy PR, Balaram P, Bhat N.  2023.  Differential Spectrum of Albumin Glycation, Oxidation, and Truncation in Type 2 and Type 1 Diabetes: Clinical and Biological Implications.. Metab Syndr Relat Disord.
Singh A, Chakrabarti S.  2023.  Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture.. PLoS Comput Biol. 19(12):e1011725.
Srinivasachari S, Tiwari VR, Kharbanda T, Sowdamini R, Subramanian R.  2023.  A dimer between monomers and hexamers-Oligomeric variations in glucosamine-6-phosphate deaminase family.. PLoS One. 18(1):e0271654.
Alves DA, George EA, Kaur R, Brockmann A, Hrncir M, Grüter C.  2023.  Diverse communication strategies in bees as a window into adaptations to an unpredictable world.. Proc Natl Acad Sci U S A. 120(24):e2219031120.
Noordstra I, Hermoso MDíez, Schimmel L, Bonfim-Melo A, Currin-Ross D, Duong CNguyen, Kalappurakkal JMathew, Morris RG, Vestweber D, Mayor S et al..  2023.  An E-cadherin-actin clutch translates the mechanical force of cortical flow for cell-cell contact to inhibit epithelial cell locomotion.. Dev Cell.
Venkatesan V, Christopher ACrystal, Rhiel M, Azhagiri MKumar K, Babu P, Walavalkar K, Saravanan B, Andrieux G, Rangaraj S, Srinivasan S et al..  2023.  Editing the core region in HPFH deletions alters fetal and adult globin expression for treatment of β-hemoglobinopathies.. Mol Ther Nucleic Acids. 32:671-688.
Mozaffer F, Cherian P, Krishna S, Wahl B, Menon GI.  2023.  Effect of hybrid immunity, school reopening, and the Omicron variant on trajectory of COVID-19 epidemic in India: A modelling study.. Lancet Reg Health Southeast Asia. :100095.
Anderson DM, Jayanthi LP, Gosavi S, Meiering EM.  2023.  Engineering the kinetic stability of a β-trefoil protein by tuning its topological complexity.. Front Mol Biosci. 10:1021733.
Daleo P, Alberti J, Chaneton EJ, Iribarne O, Tognetti PM, Bakker JD, Borer ET, Bruschetti M, MacDougall AS, Pascual J et al..  2023.  Environmental heterogeneity modulates the effect of plant diversity on the spatial variability of grassland biomass.. Nat Commun. 14(1):1809.
Chakraborty P, Hasan G.  2023.  ER-Ca2+ stores and the regulation of Store-operated Ca2+ Entry in neurons.. J Physiol.
Kikuchi DW, Allen WL, Arbuckle K, Aubier TG, Briolat ES, Burdfield-Steel ER, Cheney KL, Daňková K, Elias M, Hämäläinen L et al..  2023.  The evolution and ecology of multiple antipredator defences.. J Evol Biol.
Jagtap S, Pattabiraman C, Sankaradoss A, Krishna S, Roy R.  2023.  Evolutionary dynamics of dengue virus in India.. PLoS Pathog. 19(4):e1010862.
Kumar VRavi, Agavekar G, Agashe D.  2023.  Fitness landscapes reveal context-dependent benefits of oviposition behavior.. Evolution. 77(2):550-561.
Jeong H, Grimes K, Rauwolf KK, Bruch P-M, Rausch T, Hasenfeld P, Benito E, Roider T, Sabarinathan R, Porubsky D et al..  2023.  Functional analysis of structural variants in single cells using Strand-seq.. Nat Biotechnol. 41:832-844.
Dahal N, Romine MG, Khatiwara S, Ramakrishnan U, Lamichhaney S.  2023.  Gene flow drives genomic diversity in Asian Pikas distributed along the core and range-edge habitats in the Himalayas.. Ecol Evol. 13(5):e10129.
Gopurappilly R, Musthafa T, Sukumaran S, Viswanath B, Hasan G.  2023.  Generation of feeder-independent transgene-free iPSC lines from a young-onset Parkinson's disease (YOPD) patient with a homozygous PLA2G6: c.2222G>A (p. Arg741Gln) mutation (NCBSi003-A) and unaffected heterozygous parent (NCBSi004-A).. Stem Cell Res. 67:103033.
Raju A, Siggia ED.  2023.  A geometrical perspective on development.. Dev Growth Differ.
Kawahara AY, Storer C, Carvalho APaula S, Plotkin DM, Condamine FL, Braga MP, Ellis EA, St Laurent RA, Li X, Barve V et al..  2023.  A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins.. Nat Ecol Evol.
Mohapatra PP, Agarwal I, Mohalik RKumar, Dutta SK, Khandekar A.  2023.  Hemidactylus paucifasciatus (Squamata: Gekkonidae), a new species of large-bodied, tuberculate gecko from Northern Odisha, India. ZOOTAXA . 5301(3):365-382.
Naik T, Sharda M, P LC, Virbhadra K, Pandit A.  2023.  High-quality single amplicon sequencing method for illumina MiSeq platform using pool of 'N' (0-10) spacer-linked target specific primers without PhiX spike-in.. BMC Genomics. 24(1):141.
Brockmann A.  2023.  How India Changed My Ideas About Honey Bees. JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE .
Nazari V, Kunte K, Balint Z.  2023.  On the identity of Hesperia parrhasius Fabricius, 1793 and its allied species (Lepidoptera: Lycaenidae). JOURNAL OF ASIA-PACIFIC ENTOMOLOGY . 26(4):102165.
Sahay S, Adhikari S, Hormoz S, Chakrabarti S.  2023.  An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells.. Bioinformatics.
Tripathi AMani, Singh R, Verma AKumar, Singh A, Mishra P, Dwivedi V, Narayan S, G Sundar VHari, Shirke PArvind, Shivaprasad PV et al..  2023.  Indian Himalayan natural Arabidopsis thaliana accessions with abolished miR158 levels exhibit robust miR173-initiated trans-acting cascade silencing.. Plant J.
Mam B, Tsitsanou KE, Liggri PGV, Saitta F, Stamati ECV, Mahita J, Leonis G, Drakou CE, Papadopoulos M, Arnaud P et al..  2023.  Influence of pH on indole-dependent heterodimeric interactions between Anopheles gambiae odorant-binding proteins OBP1 and OBP4.. Int J Biol Macromol. :125422.
Verma S, Reddy P, Sowdhamini R.  2023.  Integrated approaches for the recognition of small molecule inhibitors for Toll-like receptor 4.. Comput Struct Biotechnol J. 21:3680-3689.
Jeancolas C, Singh AY, Jain S, Krishna S, Nghe P.  2023.  An interdisciplinary effort to understand chemical organizations at the origin of life.. iScience. 26(1):105834.
Parvathy J, Yazhini A, Srinivasan N, Sowdhamini R.  2023.  Interfacial residues in protein-protein complexes are in the eyes of the beholder.. Proteins.
Sabarees G., Gouthaman S., Alagarsamy V., Velmurugan V., V. Solomon R.  2023.  Isolation, Functionalization, In Silico Investigation, and Synthesis of 1,8-Cineole Analog as Antitubercular Agent Targeting InhA. Russian Journal of Bioorganic Chemistry.
Sreepadmanabh M, Ganesh M, Bhat R, Bhattacharjee T.  2023.  Jammed microgel growth medium prepared by flash-solidification of agarose for 3D cell culture and 3D bioprinting.. Biomed Mater.
Grison S, Siddaganga R, Singh R, Hegde S, Brockmann A, Krishnan S, Guo W.  2023.  Land Cover Mapping of Bengaluru's Urban and Surrounding Area with Spatiotemporal Open-source Remote Sensing Data. SENSORS AND MATERIALS. 35(11):3829-3849.
Raval PK, Ngan WYui, Gallie J, Agashe D.  2023.  The layered costs and benefits of translational redundancy.. Elife. 12
Viraktamath CA, Yeshwanth HM.  2023.  Leafhopper subfamily Hylicinae (Hemiptera: Auchenorrhyncha: Cicadellidae) in the Indian subcontinent with description of new species.. Zootaxa. 5319(4):451-500.
Redkar A, Di Pietro A, Turrà D.  2023.  Live-Cell Visualization of Early Stages of Root Colonization by the Vascular Wilt Pathogen Fusarium oxysporum.. Methods Mol Biol. 2659:73-82.
Khattri M, Amako Y, Gibbs JR, Collura JL, Arora R, Harold A, Li MYen, Harms PW, Ezhkova E, Shuda M.  2023.  Methyltransferase-independent function of enhancer of zeste homologue 2 maintains tumorigenicity induced by human oncogenic papillomavirus and polyomavirus.. Tumour Virus Res. :200264.
Mam B, Karpe SD, Sowdhamini R.  2023.  Minus-C subfamily has diverged from Classic odorant-binding proteins in honeybees. APIDOLOGIE . 54(1):12.
Thattai M.  2023.  Molecular and cellular constraints on vesicle traffic evolution.. Curr Opin Cell Biol. 80:102151.
Hou Y, Cao C, Chiba H, Chang Z, Huang S, Zhu L, Kunte K, Huang Z, Wang M, Fan X.  2023.  Molecular phylogeny, historical biogeography, and classification of Pseudocoladenia butterflies (Lepidoptera: Hesperiidae).. Mol Phylogenet Evol. 186:107865.
Singh G, George G, Raja SO, Kandaswamy P, Kumar M, Thutupalli S, Laxman S, Gulyani A.  2023.  A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration.. Proc Natl Acad Sci U S A. 120(24):e2213241120.
Ameta S, Kumar M, Chakraborty N, Matsubara YJ, S P, Gandavadi D, Thutupalli S.  2023.  Multispecies autocatalytic RNA reaction networks in coacervates.. Communications Chemistry. 6(1):91.
Mendon N, Ganie R, Kesarwani S, Dileep D, Sasi S, Lama P, Chandra A, Sirajuddin M.  2023.  Nanobody derived using a peptide epitope from the Spike protein receptor-binding motif inhibits entry of SARS-CoV-2 variants.. J Biol Chem. 299(1):102732.
Sondhi S, Efetov KA, Tarmann GM, Karmakar T, Pawar U, Kunte K.  2023.  A new species of Piarosoma Hampson, 1893 (Lepidoptera, Zygaenidae, Procridinae, Artonini) from Arunachal Pradesh, India.. Zootaxa. 5270(1):139-145.
Bhatt T, Dam B, Khedkar SUday, Lall S, Pandey S, Kataria S, Ajnabi J, Gulzar S-E-J, Dias PM, Waskar M et al..  2023.  Niacinamide enhances cathelicidin mediated SARS-CoV-2 membrane disruption.. Front Immunol. 14:1255478.
Yan X, Kohli M, Wen Y, Wang X.  2023.  Nitrogen addition and warming modulate the pathogen impact on plant biomass by shifting intraspecific functional traits and reducing species richness. JOURNAL OF ECOLOGY . 111(2):509-524.
Shashidhara LS, Joshi A.  2023.  Not teaching evolution is an injustice.. Science. 380(6652):1303.
Nair A, Shivaprasad PV.  2023.  Novel regulators of mitochondrial genome integrity.. J Biosci. 48
Devi MR, Ummalyma SB, Brockmann A, Raina V, Rajashekar Y.  2023.  Nutritional properties of giant water bug, a traditional edible insect species of North-East India.. Bioengineered. 14(1):2252669.
Warrit N, Ascher J, Basu P, Belavadi V, Brockmann A, al et.  2023.  Opportunities and challenges in Asian bee research and conservation. BIOLOGICAL CONSERVATION . 285:110173.
Dhall JKaur, Kasturacharya N, Pandit A, Cp L.  2023.  Optimized protocol for assay for transposase-accessible chromatin by sequencing (ATAC-seq) from Drosophila melanogaster brain tissue.. STAR Protoc. 4(2):102153.
Pörtner H-O, Scholes RJ, Arneth A, Barnes DKA, Burrows MT, Diamond SE, Duarte CM, Kiessling W, Leadley P, Managi S et al..  2023.  Overcoming the coupled climate and biodiversity crises and their societal impacts.. Science. 380(6642):eabl4881.
Das AA, Ratnam J, Jathanna D.  2023.  Patterns and consequences of invasion of tropical montane forests by Cestrum aurantiacum Lindl. in the Western Ghats. FRONTIERS IN ECOLOGY AND EVOLUTION .
Jobin V, Das A, Harikrishnan CP, Chanda R, Lawrence S, Robin VV.  2023.  Patterns of understory invasion in invasive timber stands of a tropical sky island.. Ecol Evol. 13(4):e9995.
Ghosh A, Venugopal A, Shinde D, Sharma S, Krishnan M, Mathre S, Krishnan H, Saha S, Raghu P.  2023.  PI3P-dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase.. Life Sci Alliance. 6(9)
G VHari Sunda, Swetha C, Basu D, Pachamuthu K, Raju S, Chakraborty T, Mosher RA, Shivaprasad PV.  2023.  Plant polymerase IV sensitizes chromatin through histone modifications to preclude spread of silencing into protein-coding domains.. Genome Res.
Rakshit S., Babji S., Parthiban C., Madhavan R., Adiga V., Sharon EJ, N. Kumar C, Ahmed A., Shivalingaiah S., Shashikumar N. et al..  2023.  Polyfunctional CD4 T-cells correlating with neutralising antibody is a hallmark of COVISHIELDTM and COVAXIN® induced immunity in COVID-19 exposed Indians.. NPJ Vaccines. 8(1):134.
Banerjee A, Gosavi S.  2023.  Potential Self-Peptide Inhibitors of the SARS-CoV-2 Main Protease.. J Phys Chem B.
Srivathsa A, Vasudev D, Nair T, Chakrabarti S, Chanchani P, DeFries R, Deomurari A, Dutta S, Ghose D, Goswami VR et al..  2023.  Prioritizing India's landscapes for biodiversity, ecosystem services and human well-being. NATURE SUSTAINABILITY .
Kumar R, Dhaka B, Sahoo S, Jolly MKumar, Sabarinathan R.  2023.  Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment.. Mol Oncol.
Jain I, Tran PT.  2023.  Prolongation of mitosis is associated with enhanced endogenous DNA damage in fission yeast.. MicroPubl Biol. 2023
van Zanten T, Greeshma PS, Mayor S.  2023.  Quantitative fluorescence emission anisotropy microscopy for implementing homo-fluorescence resonance energy transfer measurements in living cells. Mol Biol Cell.. 34(6)
Chakraborty P., Deb B.K, Arige V., Musthafa T., Malik S., Yule D.I, Taylor C.W., Hasan G.  2023.  Regulation of store-operated Ca2+ entry by IP3 receptors independent of their ability to release Ca2.. Elife. 12(e80447)

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