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Author Title [ Type(Desc)] Year
Journal Article
Sachdeva H, Barma M, Rao M.  2016.  Nonequilibrium description of de novo biogenesis and transport through Golgi-like cisternae.. Sci Rep. 6:38840.
Gowrishankar K, Rao M.  2016.  Nonequilibrium phase transitions, fluctuations and correlations in an active contractile polar fluid.. Soft Matter. 12(7):2040-6.
Mithileshwari C, Srivastava T, Kumar V, Kumar A, Umapathy G.  2016.  Non-invasive assessment of fecal progestagens and pregnancy detection in Himalayan musk deer (Moschus chrysogaster).. Theriogenology. 85(2):216-23.
Wickramasinghe N, Robin VV, Ramakrishnan U, Reddy S, Seneviratne SS.  2017.  Non-sister Sri Lankan white-eyes (genus Zosterops) are a result of independent colonizations.. PLoS One. 12(8):e0181441.
Krishnaswamy J., Vaidyanathan S., Rajagopalan B., Bonell M., Sankaran M., Bhalla R.S, Badiger S..  2015.  Non‑stationary and non‑linear influence of ENSO and Indian Ocean Dipole on the variability of Indian monsoon rainfall and extreme rain events. Climate Dynamics. 45:175-184..
Rodrigues C, Joy LR, Sachithanandan SP, Krishna S.  2019.  Notch signalling in cervical cancer.. Exp Cell Res. :111682.
Marcel N, Sarin A.  2016.  Notch1 regulated autophagy controls survival and suppressor activity of activated murine T-regulatory cells.. Elife. 5
Naik S, MacFarlane M, Sarin A.  2015.  Notch4 Signaling Confers Susceptibility to TRAIL-Induced Apoptosis in Breast Cancer Cells.. J Cell Biochem. 116(7):1371-80.
Ghosh A, Sharma S, Shinde D, Ramya V, Raghu P.  2019.  A novel mass assay to measure phosphatidylinositol-5-phosphate from cells and tissues.. Biosci Rep. 39(10)
Mudgal R, Sandhya S, Kumar G, Sowdhamini R, Chandra NR, Srinivasan N.  2015.  NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.. Nucleic Acids Res. 43(Database issue):D300-5.
Ray S, Chintaluri C, Bhalla US, Wójcik DK.  2016.  NSDF: Neuroscience Simulation Data Format.. Neuroinformatics. 14(2):147-67.
Singh P, Seshasayee ASai Narain.  2017.  Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.. Methods Mol Biol. 1624:85-97.
Bhatia S, Krishnamoorthy G, Dhar D, Udgaonkar JB.  2019.  Observation of Continuous Contraction and a Metastable Misfolded State during the Collapse and Folding of a Small Protein.. J Mol Biol.
Surana P, Das R.  2016.  Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR.. Protein Sci.
Sujkowski A, Ramesh D, Brockmann A, Wessells R.  2017.  Octopamine Drives Endurance Exercise Adaptations in Drosophila.. Cell Rep. 21(7):1809-1823.
Saxena N, Natesan D, Sane SP.  2018.  Odor source localization in complex visual environments by fruit flies.. J Exp Biol. 221(Pt 2)
Adurthi S, Kumar MM, Vinodkumar HS, Mukherjee G, Krishnamurthy H, K Acharya K, Bafna UD, Uma DK, Abhishekh B, Krishna S et al..  2017.  Oestrogen Receptor-α binds the FOXP3 promoter and modulates regulatory T-cell function in human cervical cancer.. Sci Rep. 7(1):17289.
Gupta P, Bhalla US.  2016.  Olfaction: Minority odors get equal say.. Elife. 5
Gupta P, Albeanu DF, Bhalla US.  2015.  Olfactory bulb coding of odors, mixtures and sniffs is a linear sum of odor time profiles.. Nat Neurosci. 18(2):272-81.
Parchure A, Vyas N, Ferguson C, Parton RG, Mayor S.  2015.  Oligomerization and endocytosis of Hedgehog is necessary for its efficient exovesicular secretion.. Mol Biol Cell. 26(25):4700-17.
Nair J, Sanmugam PV, Karpe SD, Ramakrishnan U, Olsson SB.  2018.  An optimized protocol for large-scale in situ sampling and analysis of volatile organic compounds. Ecology and Evolution. 8(11):59242-5935.
Thattai M.  2017.  Organelle acidification: an ancient cellular leak detector.. BMC Biol. 15(1):51.
Ramakrishnan N, Ipsen JH, Rao M, Kumar PBSunil.  2015.  Organelle morphogenesis by active membrane remodeling.. Soft Matter. 11(12):2387-93.
Reynolds AM, Reynolds DR, Sane SP, Hu G, Chapman JW.  2016.  Orientation in high-flying migrant insects in relation to flows: mechanisms and strategies.. Philos Trans R Soc Lond B Biol Sci. 371(1704)
Jethva PN, Udgaonkar JB.  2018.  The Osmolyte TMAO Modulates Protein Folding Cooperativity by Altering Global Protein Stability.. Biochemistry.
Yadahalli S, Gosavi S.  2017.  Packing energetics determine the folding routes of the RNase-H proteins.. Phys Chem Chem Phys.
Pincha N, Hajam EYousaf, Badarinath K, Batta SPrakash Ra, Masudi T, Dey R, Andreasen P, Kawakami T, Samuel R, George R et al..  2018.  PAI1 mediates fibroblast-mast cell interactions in skin fibrosis.. J Clin Invest.
Moulick R, Das R, Udgaonkar JB.  2015.  Partially Unfolded Forms of the Prion Protein Populated under Misfolding-promoting Conditions: CHARACTERIZATION BY HYDROGEN EXCHANGE MASS SPECTROMETRY AND NMR.. J Biol Chem. 290(42):25227-40.
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.  2016.  PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Ghosh P, Bhattacharyya T, Mathew OK, Sowdhamini R.  2019.  PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.. Database (Oxford). 2019
Khan I, Prakash A, Agashe D.  2019.  Pathogen susceptibility and fitness costs explain variation in immune priming across natural populations of flour beetles.. J Anim Ecol.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.  2016.  The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Sabareesan AT, Udgaonkar JB.  2016.  Pathogenic mutations within the disordered palindromic region of the prion protein induce structure therein and accelerate the formation of misfolded oligomers.. J Mol Biol.
Varma V., Ratnam J., Viswanathan V., Osuri A.M, Biesmeijer J.C, Madhusudan M.D, Sankaran M..  2015.  Perceptions of priority issues in the conservation of biodiversity and ecosystems in India. Biological Conservation . 187:201-211.
Murata S, Brockmann A, Tanimura T.  2017.  Pharyngeal stimulation with sugar triggers local searching behavior in Drosophila.. J Exp Biol.
Das A, Polley A, Rao M.  2016.  Phase Segregation of Passive Advective Particles in an Active Medium.. Phys Rev Lett. 116(6):068306.
Sanjenbam P, Buddidathi R, Venkatesan R, Shivaprasad PV, Agashe D.  2020.  Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India.. PLoS One. 15(2):e0228550.
Saha S, Prakash V, Halder S, Chakraborty K, Krishnan Y.  2015.  A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells.. Nat Nanotechnol. 10(7):645-51.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.  2019.  Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Kamalesh K, Trivedi D, Toscano S, Sharma S, Kolay S, Raghu P.  2017.  Phosphatidylinositol 5-phosphate 4-kinase regulates early endosomal dynamics during clathrin-mediated endocytosis.. J Cell Sci.
Balakrishnan SS, Basu U, Raghu P.  2015.  Phosphoinositide signalling in Drosophila.. Biochim Biophys Acta. 1851(6):770-84.
Padinjat R, Joseph A, Krishnan H, Singh P, Saha S.  2019.  Phosphoinositides: Regulators of Nervous System Function in Health and Disease. FRONTIERS IN MOLECULAR NEUROSCIENCE. 12
Thakur R, Panda A, Coessens E, Raj N, Yadav S, Balakrishnan S, Zhang Q, Georgiev P, Basak B, Pasricha R et al..  2016.  Phospholipase D activity couples plasma membrane endocytosis with retromer dependent recycling.. Elife. 5
Cockcroft S, Raghu P.  2018.  Phospholipid transport protein function at organelle contact sites.. Curr Opin Cell Biol. 53:52-60.
Kim S, Kalappurakkal JM, Mayor S, Rosen MK.  2019.  Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction.. Mol Biol Cell. :mbcE18120823.
Lajmi A, Bansal R, Giri VB, Karanth P.  2019.   Phylogeny and biogeography of the endemic Hemidactylus geckos of the Indian subregion suggest multiple dispersals from Peninsular India to Sri Lanka. Zoological Journal of the Linnean Society. 186(186):286–301.
Agarwal I, Ramakrishnan U.  2017.  A phylogeny of open-habitat lizards (Squamata: Lacertidae: Ophisops) supports the antiquity of Indian grassy biomes. JOURNAL OF BIOGEOGRAPHY . 44(9):2021-2032.
Kosmalska AJoanna, Casares L, Elosegui-Artola A, Thottacherry JJose, Moreno-Vicente R, González-Tarragó V, del Pozo MÁngel, Mayor S, Arroyo M, Navajas D et al..  2015.  Physical principles of membrane remodelling during cell mechanoadaptation.. Nat Commun. 6:7292.
Vijayakrishnan S, Kumar MAnanda, Umapathy G, Kumar V, Sinha A.  2018.  Physiological stress responses in wild Asian elephants Elephas maximus in a human-dominated landscape in the Western Ghats, southern India.. Gen Comp Endocrinol. 266:150-156.
Mathew OKaleeckal, Sowdhamini R.  2016.  PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization.. Bioinformation. 12(1):9-11.
Mathew OK, Sowdhamini R.  2016.  PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies.. Bioinform Biol Insights. 10:105-9.
R Kumar V.  2019.  Plant Antiviral Immunity Against Geminiviruses and Viral Counter-Defense for Survival.. Front Microbiol. 10:1460.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Ghosh E, Venkatesan R.  2019.  Plant Volatiles Modulate Immune Responses of Spodoptera litura.. J Chem Ecol.
Jain D, Narayanan N, Nair DT.  2016.  Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.. J Biol Chem. 291(3):1235-42.
Chandrasegaran K, Singh A, Laha M, Quader S.  2018.  Playing it safe? Behavioural responses of mosquito larvae encountering a fish predator ETHOLOGY ECOLOGY & EVOLUTION. 30(1):70-87.
Johnson MK, Kottur J, Nair DT.  2019.  A polar filter in DNA polymerases prevents ribonucleotide incorporation.. Nucleic Acids Res.
Singh P, Macdonald DW.  2017.  Populations and activity patterns of clouded leopards and marbled cats in Dampa Tiger Reserve, India. JOURNAL OF MAMMALOGY. 98(5):1453-1462.
Sukhwal A, Sowdhamini R.  2015.  PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.. Bioinform Biol Insights. 9:141-51.
Bhatia A, Moza S, Bhalla USingh.  2019.  Precise excitation-inhibition balance controls gain and timing in the hippocampus.. Elife. 8
Yang L, Ravikanthachari N, Mariño-Pérez R, Deshmukh R, Wu M, Rosenstein A, Kunte K, Song H, Andolfatto P.  2019.  Predictability in the evolution of Orthopteran cardenolide insensitivity.. Philos Trans R Soc Lond B Biol Sci. 374(1777):20180246.
Su S, Lim M, Kunte K.  2015.  Prey from the eyes of predators: Color discriminability of aposematic and mimetic butterflies from an avian visual perspective.. Evolution. 69(11):2985-94.
Das T, Ganguly S, Sengupta S, Rao M.  2015.  Pre-yield non-affine fluctuations and a hidden critical point in strained crystals.. Sci Rep. 5:10644.
Mahita J, Sowdhamini R.  2018.  Probing subtle conformational changes induced by phosphorylation and point mutations in the TIR domains of TLR2 and TLR3.. Proteins.
Ghosh-Harihar M, An R, Athrey R, Borthakur U, Chanchani P, Chetry D, Datta A, Harihar A, Karanth KK, Mariyam D et al..  2019.  Protected areas and biodiversity conservation in India. BIOLOGICAL CONSERVATION. 237:114-124.
Mascarenhas NManuel, Gosavi S.  2016.  Protein Domain-Swapping Can Be a Consequence of Functional Residues.. J Phys Chem B. 120(28):6929-38.
Ashe S, Malhotra V, Raghu P.  2018.  Protein kinase D regulates metabolism and growth by controlling secretion of insulin like peptide.. Dev Biol. 434(1):175-185.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.  2016.  Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Broom A, Gosavi S, Meiering EM.  2015.  Protein unfolding rates correlate as strongly as folding rates with native structure.. Protein Sci. 24(4):580-7.
Nilofer C, Sukhwal A, Mohanapriya A, Kangueane P.  2017.  Protein-protein interfaces are vdW dominant with selective H-bonds and (or) electrostatics towards broad functional specificity.. Bioinformation. 13(6):164-173.
Richhariya S, Jayakumar S, Abruzzi K, Rosbash M, Hasan G.  2017.  A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons.. Sci Rep. 7:42586.
Jha A, van Zanten TS, Philippe J-M, Mayor S, Lecuit T.  2018.  Quantitative Control of GPCR Organization and Signaling by Endocytosis in Epithelial Morphogenesis.. Curr Biol.
Bhatia D, Arumugam S, Nasilowski M, Joshi H, Wunder C, Chambon V, Prakash V, Grazon C, Nadal B, Maiti PK et al..  2016.  Quantum dot-loaded monofunctionalized DNA icosahedra for single-particle tracking of endocytic pathways.. Nat Nanotechnol.
Chakraborty D, Ramakrishnan U, Sinha A.  2015.  Quaternary climate change and social behavior shaped the genetic differentiation of an endangered montane primate from the southern edge of the Tibetan Plateau.. Am J Primatol. 77(3):271-84.
Richhariya S, Hasan G.  2017.  Ral function in muscle is required for flight maintenance in Drosophila.. Small GTPases. :1-6.
Nandi SKumar, Mandal R, Bhuyan PJyoti, Dasgupta C, Rao M, Gov NS.  2018.  A random first-order transition theory for an active glass.. Proc Natl Acad Sci U S A. 115(30):7688-7693.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.  2016.  Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
Prakash V, Saha S, Chakraborty K, Krishnan Y.  2016.  Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chemical Science . 7:1946-1953.
Baliga C, Majhi S, Mondal K, Bhattacharjee A, VijayRaghavan K, Varadarajan R.  2016.  Rational elicitation of cold-sensitive phenotypes.. Proc Natl Acad Sci U S A. 113(18):E2506-15.
Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P.  2015.  RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.. J Cell Sci. 128(17):3330-44.
Yadav S, Thakur R, Georgiev P, Deivasigamani S, Krishnan H, Ratnaparkhi G, Raghu P.  2018.  RDGBα localization and function at membrane contact sites is regulated by FFAT-VAP interactions.. J Cell Sci. 131(1)
Kottur J, Nair DT.  2016.  Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics.. Angew Chem Int Ed Engl. 55(7):2397-400.
Gower DJ, Giri V, Captain A, Wilkinson M.  2016.  A reassessment of Melanophidium Günther, 1864 (Squamata: Serpentes: Uropeltidae) from the Western Ghats of peninsular India, with the description of a new species.. Zootaxa. 4085(4):481-503.
Hemalatha A, Mayor S.  2019.  Recent advances in clathrin-independent endocytosis.. F1000Res. 8
Chaitanya R, Giri VB, Deepak V..  2017.  On the recent designation of a neotype for the taxon Calotes versicolor (Daudin, 1802) (Reptilia: Agamidae). Zootaxa. 4317(3):585-587.
Dash PKumar, Pattabiraman C, Tandel K, Sharma S, Kumar JS, Siddappa S, Gowda M, Krishna S, Parida M.  2018.  Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing.. Genome Announc. 6(26)
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.  2016.  Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Cyriac VP, Johny A, Umesh P, Palot M, Campbell PD.  2019.  Rediscovery of Cnemaspis nilagirica Manamendra-Arachchi, Batuwita and Pethiyagoda, 2007 (Squamata: Gekkonidae) from Kerala, India with notes on morphology and distribution. ZOOTAXA. 4586(1):98-108.
Lal A, Krishna S, Seshasayee ASai Narain.  2018.  Regulation of Global Transcription in by Rsd and 6S RNA.. G3 (Bethesda).
Thakur R, Naik A, Panda A, Raghu P.  2019.  Regulation of Membrane Turnover by Phosphatidic Acid: Cellular Functions and Disease Implications.. Front Cell Dev Biol. 7:83.
Balakrishnan SS, Basu U, Shinde D, Thakur R, Jaiswal M, Raghu P.  2018.  Regulation of PI4P levels by PI4KIIIα during G-protein coupled PLC signaling in photoreceptors.. J Cell Sci.
Deb BK, Hasan G.  2016.  Regulation of Store-Operated Ca(2+) Entry by Septins.. Front Cell Dev Biol. 4:142.
Dubey AK, Godbole A, Mathew MK.  2016.  Regulation of VDAC trafficking modulates cell death.. Cell Death Discov. 2:16085.
Patel D, Anilkumar S, Chattarji S, Buwalda B.  2018.  Repeated social stress leads to contrasting patterns of structural plasticity in the amygdala and hippocampus.. Behav Brain Res. 347:314-324.
Alexandrov LB, Kim J, Haradhvala NJ, Huang MNi, Ng AWei Tian, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN et al..  2020.  The repertoire of mutational signatures in human cancer. Nature. 578(7793):94-101.
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Krishnamurthi R, Ghosh S, Khedkar S, Seshasayee ASai Narain.  2017.  Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12.. mSphere. 2(6)
Basu S, Sanyal P, Pillai AAS, Ambili A.  2019.  Response of grassland ecosystem to monsoonal precipitation variability during the Mid-Late Holocene: Inferences based on molecular isotopic records from Banni grassland, western India.. PLoS One. 14(4):e0212743.
Ongole S, Sankaran M, Karanth KK.  2018.  Responses of aerial insectivorous bats to local and landscape-level features of coffee agroforestry systems in Western Ghats, India.. PLoS One. 13(8):e0201648.

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