Author Title [ Type(Desc)] Year
Journal Article
Gardner B, Sollmann R, N Kumar S, Jathanna D, K Karanth U.  2018.  State space and movement specification in open population spatial capture-recapture models.. Ecol Evol. 8(20):10336-10344.
Bhattacharya M, Isvaran K, Balakrishnan R.  2017.  A statistical approach to understanding reproductive isolation in two sympatric species of tree crickets.. J Exp Biol. 220(Pt 7):1222-1232.
Aghera N, Udgaonkar JB.  2017.  Stepwise Assembly of β-Sheet Structure during the Folding of an SH3 Domain Revealed by a Pulsed Hydrogen Exchange Mass Spectrometry Study.. Biochemistry.
Kasturacharya N, Dhall JKaur, Hasan G.  2023.  A STIM dependent dopamine-neuropeptide axis maintains the larval drive to feed and grow in Drosophila.. PLoS Genet. 19(6):e1010435.
Deb BK, Pathak T, Hasan G.  2016.  Store-independent modulation of Ca(2+) entry through Orai by Septin 7.. Nat Commun. 7
Chakraborty S, Hasan G.  2018.  Store-Operated Ca Entry in Drosophila Primary Neuronal Cultures.. Methods Mol Biol. 1843:125-136.
Mitra R, Hasan G.  2022.  Store-operated Ca2+ entry regulates neuronal gene expression and function.. Curr Opin Neurobiol. 73:102520.
Pathak T, Agrawal T, Richhariya S, Sadaf S, Hasan G.  2015.  Store-Operated Calcium Entry through Orai Is Required for Transcriptional Maturation of the Flight Circuit in Drosophila.. J Neurosci. 35(40):13784-99.
Srivathsa A, Sharma S, Singh P, Punjabi GA, Oli MK.  2020.  A strategic road map for conserving the Endangered dhole Cuon alpinus in India. MAMMAL REVIEW.
Prabhakara C, Godbole R, Sil P, Jahnavi S, Gulzar S-E-J, van Zanten TS, Sheth D, Subhash N, Chandra A, Shivaraj A et al..  2021.  Strategies to target SARS-CoV-2 entry and infection using dual mechanisms of inhibition by acidification inhibitors.. PLoS Pathog. 17(7):e1009706.
Das A, Bhat A, Sknepnek R, Köster D, Mayor S, Rao M.  2020.  Stratification relieves constraints from steric hindrance in the generation of compact actomyosin asters at the membrane cortex.. Sci Adv. 6(1)
Bose M, Nawaz MSarfaraz, Pal R, Chattarji S.  2022.  Stress Elicits Contrasting Effects on Rac1-Cofilin Signaling in the Hippocampus and Amygdala.. Front Mol Neurosci. 15:880382.
Naskar S, Chattarji S.  2019.  Stress Elicits Contrasting Effects on the Structure and Number of Astrocytes in the Amygdala versus Hippocampus.. eNeuro. 6(1)
Tomar A, Polygalov D, Chattarji S, McHugh TJ.  2021.  Stress enhances hippocampal neuronal synchrony and alters ripple-spike interaction.. Neurobiol Stress. 14:100327.
Shukla A, Chattarji S.  2021.  Stressed rats fail to exhibit avoidance reactions to innately aversive social calls.. Neuropsychopharmacology.
Yasmin F, Colangeli R, Morena M, Filipski S, van der Stelt M, Pittman QJ, Hillard CJ, G Teskey C, McEwen BS, Hill MN et al..  2020.  Stress-induced modulation of endocannabinoid signaling leads to delayed strengthening of synaptic connectivity in the amygdala.. Proc Natl Acad Sci U S A. 117(1):650-655.
Coverdale TC, McGeary IJ, O'Connell RD, Palmer TM, , Sankaran M, Augustine DJ, Ford AT, Pringle RM.  2019.  Strong but opposing effects of associational resistance and susceptibility on defense phenotype in an African savanna plant. OIKOS.
Surana P, Gowda CM, Tripathi V, Broday L, Das R.  2017.  Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans.. PLoS One. 12(10):e0186622.
Rakesh R, Joseph APraveen, Bhaskara RM, Srinivasan N.  2016.  Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.. RNA Biol. 13(10):1025-1040.
Bhagavan H, Muthmann O, Brockmann A.  2016.  Structural and temporal dynamics of the bee curtain in the open-nesting honey bee species, Apis florea. Apidologie.
Jayanth N, Ogirala N, Yadav A, Puranik M.  2018.  Structural basis for substrate discrimination by E. coli repair enzyme, AlkB. RSC ADVANCES. 8(3):1281-1291.
Dongre AVilas, Das S, Bellur A, Kumar S, Chandrashekarmath A, Karmakar T, Balaram P, Balasubramanian S, Balaram H.  2021.  Structural basis for the hyperthermostability of an archaeal enzyme induced by succinimide formation.. Biophys J.
Bhattacharjee R, Udgaonkar JB.  2021.  Structural Characterization of the Cooperativity of Unfolding of a Heterodimeric Protein Using Hydrogen Exchange-Mass Spectrometry.. J Mol Biol. :167268.
Singh J, Udgaonkar JB.  2015.  Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Vinothkumar KR.  2023.  Structural heterogeneity of the Rieske iron-sulfur protein in a yeast complex III.. IUCrJ. 10(Pt 1):1-3.
Kumari A, Kesarwani S, Javoor MG, Vinothkumar KR, Sirajuddin M.  2020.  Structural insights into actin filament recognition by commonly used cellular actin markers. EMBO J. 39(14)
Verma S, Menon R, Sowdhamini R.  2024.  Structural insights into the role of deleterious mutations at the dimeric interface of Toll-like receptor interferon-β related adaptor protein.. Proteins.
Chakraborty S, Krishnan Y.  2017.  A structural map of oncomiR-1 at single-nucleotide resolution.. Nucleic Acids Res. 45(16):9694-9705.
Sengupta I, Udgaonkar JB.  2018.  Structural mechanisms of oligomer and amyloid fibril formation by the prion protein.. Chem Commun (Camb).
Tiwari V, Sowdhamini R.  2023.  Structural modelling and dynamics of full-length of TLR10 sheds light on possible modes of dimerization, ligand binding and mechanism of action.. Curr Res Struct Biol. 5:100097.
Krishnan H, Basak B, Nath VR, Mishra S, Raghu P.  2023.  Structural organization of RDGB (retinal degeneration B), a multi-domain lipid transfer protein: a molecular modelling and simulation based approach.. J Biomol Struct Dyn. :1-15.
Rao VVHemanth, Gosavi S.  2015.  Structural Perturbations Present in the Folding Cores of Interleukin-33 and Interleukin-1β Correlate to Differences in Their Function.. J Phys Chem B. 119(34):11203-14.
Bhattacharyya T, Ghosh A, Verma S, Raghu P, Sowdhamini R.  2023.  Structural rationale to understand the effect of disease-associated mutations on Myotubularin.. Curr Res Struct Biol. 5:100100.
Ahmad M, Jha B, Bose S, Tiwari S, Dwivedy A, Kar D, Pal R, Mariadasse R, Parish T, Jeyakanthan J et al..  2023.  Structural snapshots of Mycobacterium tuberculosis enolase reveal dual mode of 2PG binding and its implication in enzyme catalysis.. IUCrJ. 10(Pt 6):738-753.
Kendroud S, Bohra AA, Kuert PA, Nguyen B, Guillermin O, Sprecher SG, Reichert H, VijayRaghavan K, Hartenstein V.  2018.  Structure and development of the subesophageal zone of the Drosophila brain. II. Sensory compartments.. J Comp Neurol. 526(1):33-58.
Setty TGangi, Sarkar A, Coombes D, Dobson RCJ, Subramanian R.  2020.  Structure and Function of -Acetylmannosamine Kinases from Pathogenic Bacteria.. ACS Omega. 5(48):30923-30936.
Tiwari V, Sowdhamini R.  2023.  Structure modelling of odorant receptor from and identification of potential repellent molecules.. Comput Struct Biotechnol J. 21:2204-2214.
Nirwan N, Itoh Y, Singh P, Bandyopadhyay S, Vinothkumar KR, Amunts A, Saikrishnan K.  2019.  Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.. Nat Commun. 10(1):3058.
Petrauskas A., Fortunati DL, Kandi AR, Pothapragada SS, Agrawal K., Singh A., Huelsmeier J., Hillebrand J., Brown G., Chaturvedi D. et al..  2024.  Structured and disordered regions of Ataxin-2 contribute differently to the specificity and efficiency of mRNP granule formation. PLoS Genetics. 20(20):e1011251.
Naveenkumar N, Prabantu VManjveekar, Vishwanath S, Sowdhamini R, Srinivasan N.  2022.  Structures of distantly-related interacting protein homologues are less divergent than non-interacting homologues.. FEBS Open Bio.
Srivathsa A, Puri M, Kumar NS, Jathanna D, Karanth KU.  2018.  Substituting space for time: Empirical evaluation of spatial replication as a surrogate for temporal replication in occupancy modelling . JOURNAL OF APPLIED ECOLOGY . 55(55 ):754-765.
Singh D, Bhalla USingh.  2018.  Subunit exchange enhances information retention by CaMKII in dendritic spines.. Elife. 7
Gershenson A, Gosavi S, Faccioli P, Wintrode PL.  2020.  Successes and challenges in simulating the folding of large proteins.. J Biol Chem. 295(1):15-33.
Osuri AM, chakravarthy D, Mudappa D, Raman STR, Ayyappan N, Muthuramkumar S, Parthasarathy N.  2017.  Successional status, seed dispersal mode and overstorey species influence tree regeneration in tropical rain-forest fragments in Western Ghats, India. Journal of Tropical Ecology. 33(4):270-284.
Brockmann A, Basu P, Shakeel M, Murata S, Murashima N, Boyapati RKumar, Prabhu NG, Herman JJ, Tanimura T.  2018.  Sugar Intake Elicits Intelligent Searching Behavior in Flies and Honey Bees.. Front Behav Neurosci. 12:280.
Hao X, Parmar JJ, Lelandais B, Aristov A, Ouyang W, Weber C, Zimmer C.  2021.  Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures.. Genome Biol. 22(1):150.
Gouthaman S, Jayaraj A, Sugunalakshmi M, Sivaraman G, P CAyya Swamy.  2022.  Supramolecular self-assembly mediated aggregation-induced emission of fluorene-derived cyanostilbenes: multifunctional probes for live cell-imaging.. J Mater Chem B.
Dhanyasi N, Segal D, Shimoni E, Shinder V, Shilo B-Z, VijayRaghavan K, Schejter ED.  2015.  Surface apposition and multiple cell contacts promote myoblast fusion in Drosophila flight muscles.. J Cell Biol. 211(1):191-203.
Mayor S, Bhat A, Kusumi A.  2023.  A Survey of Models of Cell Membranes: Toward a New Understanding of Membrane Organization.. Cold Spring Harb Perspect Biol. 15(10)
Sundaramurthy V, Korf H, Singla A, Scherr N, Nguyen L, Ferrari G, Landmann R, Huygen K, Pieters J.  2017.  Survival of Mycobacterium tuberculosis and Mycobacterium bovis BCG in lysosomes in vivo.. Microbes Infect. 19(11):515-526.
Hasan G.  2020.  Surviving nutritional deprivation during development: neuronal intracellular calcium signaling is critical.. Int J Dev Biol. 64(1-2-3):249-256.
Bhatt T, Bhosale A, Bajantri B, Mathapathi MSwamy, Rizvi A, Scita G, Majumdar A, Jamora C.  2019.  Sustained Secretion of the Antimicrobial Peptide S100A7 Is Dependent on the Downregulation of Caspase-8.. Cell Rep. 29(9):2546-2555.e4.
Rodrigues C, Pattabiraman C, Vijaykumar A, Arora R, Narayana SMysore, Kumar RV, Notani D, Varga-Weisz P, Krishna S.  2019.  A SUV39H1-low chromatin state characterises and promotes migratory properties of cervical cancer cells.. Exp Cell Res.
HarshaRani GV, Moza S, Ramakrishnan N, Bhalla US.  2021.  SWITCHES: Searchable web interface for topologies of CHEmical switches.. Bioinformatics.
Yapo C, Nair AG, Kotaleski JHellgren, Vincent P, Castro LRV.  2018.  Switch-like PKA responses in the nucleus of striatal neurons.. J Cell Sci.
Bhalla USingh.  2017.  Synaptic input sequence discrimination on behavioral time-scales mediated by reaction-diffusion chemistry in dendrites.. Elife. 6
Kundu S, Ganguly A, Chakraborty TSubhra, Kumar A, Siddiqi O.  2016.  Synergism and Combinatorial Coding for Binary Odor Mixture Perception in Drosophila.. eNeuro. 3(4)
Schoen JM, Neelakantan A, Cushman SA, Dutta T, Habib B, Jhala YV, Mondal I, Ramakrishnan U, P Reddy A, Saini S et al..  2022.  Synthesizing habitat connectivity analyses of a globally important human-dominated tiger-conservation landscape.. Conserv Biol.
Ananthamurthy KG, Bhalla US.  2023.  Synthetic Data Resource and Benchmarks for Time Cell Analysis and Detection Algorithms.. eNeuro.
Mirza ZA, Varma V, Campbell PD.  2020.  On the systematic status of Calliophis macclellandi nigriventer Wall, 1908 (Reptilia: Serpentes: Elapidae). ZOOTAXA. 4821(1):105-120.
Dinesh KP, Vijayakumar SP, Channakeshavamurthy BH, Torsekar VR, Kulkarni NU, Shanker K.  2015.  Systematic status of Fejervarya ((Amphibia, Anura, Dicroglossidae) from South and SE Asia with the description of a new species from the Western Ghats of Peninsular India.. Zootaxa. 3999(1):79-94.
Giri VB, Chaitanya R, Mahony S, Lalrounga S, Lalrinchhana C, Das A, Sarkar V, Karanth P, Deepak V.  2019.  On the systematic status of the genus Oriocalotes Günther, 1864 (Squamata: Agamidae: Draconinae) with the description of a new species from Mizoram state, Northeast India.. Zootaxa. 4638(4):zootaxa.4638.4.1.
Deepak V., Giri VB, Asif M, Dutta SKumar, Vyas R, Zambre AM, Bhosale H, K. Karanth P.  2016.  Systematics and phylogeny of Sitana (Reptilia: Agamidae) of Peninsular India, with the description of one new genus and five new species. Contributions to Zoology. 85(1):67-111.
Gowande G, Bhosale H, Phansalkar P, Sawant M, Mirza ZA.  2021.  On the systematics and the phylogenetic position of the poorly known, montane dragon-lizard species Pseudocalotes austeniana (Annandale, 1908) (Squamata, Agamidae, Draconinae). Evolutionary Systematics. 5(1):141-150.
Shrivastava R, Köster D, Kalme S, Mayor S, Neerathilingam M.  2015.  Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro.. PLoS One. 10(4):e0123428.
Ghosh P, Grellscheid SNagaraja, Sowdhamini R.  2016.  A tale of two paralogs: human Transformer2 proteins with differential RNA-binding affinities.. J Biomol Struct Dyn. 34(9):1979-86.
Heltberg ML, Krishna S, Kadanoff LP, Jensen MH.  2021.  A tale of two rhythms: Locked clocks and chaos in biology.. Cell Syst. 12(4):291-303.
Alam SSahajada M, Samanta A, Uddin F, Ali S, Hoque M.  2023.  Tanshinone IIA targeting cell signaling pathways: a plausible paradigm for cancer therapy.. Pharmacol Rep.
Mishra R, Kohli S, Malhotra N, Bandyopadhyay P, Mehta M, Munshi MH, Adiga V, Ahuja VKamal, Shandil RK, Rajmani RS et al..  2019.  Targeting redox heterogeneity to counteract drug tolerance in replicating .. Sci Transl Med. 11(518)
Narayanankutty A, Sasidharan A, Job JT.  2020.  Targeting Toll like Receptors in Cancer: Role of TLR Natural and Synthetic Modulators. Curr Pharm Des. 26(39):5040-5053.
Caleb JTD, Sanap RV, Prajapati DA, Bambhaniya P.  2021.  Taxonomic notes on two jumping spider species of the genus Epocilla Thorell, 1887 (Araneae: Salticidae: Chrysillini) from India and Pakistan. ARTHROPODA SELECTA . 30:221-229.
Agavekar G, Garcia FHita, Economo EP.  2017.  Taxonomic overview of the hyperdiverse ant genus Tetramorium Mayr (Hymenoptera, Formicidae) in India with descriptions and X-ray microtomography of two new species from the Andaman Islands.. PeerJ. 5:e3800.
Datta-Roy A, Deepak V., Chaitanya R, Murthy C, Bhosale H, Lajmi A, K. Karanth P, Kunte K, Giri V.  2017.  On the taxonomic status of Eurylepis poonaensis (Squamata: Scincidae): resolving a long-standing conundrum. SALAMANDRA. 53(3):389-397.
McClanahan TR, Darling ES, Maina JM, Muthiga NA, D'agata S, Jupiter SD, Arthur R, Wilson SK, Mangubhai S, Nand Y et al..  2019.  Temperature patterns and mechanisms influencing coral bleaching during the 2016 El Nino. Nature Climate Change. 9:845–851.
Basu DNath, Bhaumik V, Kunte K.  2023.  The tempo and mode of character evolution in the assembly of mimetic communities.. Proc Natl Acad Sci U S A. 120(1):e2203724120.
Young A.M., Kohl P.L., Rutschmann B., teffen-Dewenter I, Brockmann A.  2021.  Temporal and spatial foraging patterns of three Asian honey bee species in Bangalore, India. Apidologie .
Shakeel M, Brockmann A.  2023.  Temporal effects of sugar intake on fly local search and honey bee dance behaviour.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Panicker D, Stafford KM.  2023.  Temporal variability of a soundscape near a mid-oceanic atoll in the northern Indian ocean. PROGRESS IN OCEANOGRAPHY . 214:103033.
Blobel GA, Higgs DR, Mitchell JA, Notani D, Young RA.  2021.  Testing the super-enhancer concept.. Nat Rev Genet.
Raju A, Xue BK, Leibler S.  2023.  A theoretical perspective on Waddington's genetic assimilation experiments.. Proc Natl Acad Sci U S A. 120(51):e2309760120.
Das AAbin, Ratnam J.  2022.  The thermal niche and phylogenetic assembly of evergreen tree metacommunities in a mid-to-upper tropical montane zone.. Proc Biol Sci. 289(1977):20220038.
Ravichandran A, Das R.  2024.  The Thermodynamic Properties of Fat10ylated Proteins Are Regulated by the Fat10ylation Site. ACS OMEGA. 9(20):22265-22276.
Wigley BJ, Coetsee C, Augustine DJ, Ratnam J, Hattas D, Sankaran M..  2019.  A thorny issue: Woody plant defence and growth in an East African savanna. JOURNAL OF ECOLOGY. 107(4):1839-1851.
Marathe K, Sanap R, Joglekar A, Caleb JTD, Maddison WP.  2022.  Three new and notes on two other jumping spider species of the genus Stenaelurillus Simon, 1886 (Salticidae: Aelurillina) from the Deccan Plateau, India.. Zootaxa. 5125(1):1-19.
Khandekar A, Thackeray T, Agarwal I.  2022.  Three new cryptic species of South Asian Cnemaspis Strauch, 1887 (Squamata, Gekkonidae) from Karnataka, India. VERTEBRATE ZOOLOGY . 72:115-142.
Joshi S, Subramanian KA, Babu R, Sawant D, Kunte K.  2020.  Three new species of Protosticta Selys, 1885 (Odonata: Zygoptera: Platystictidae) from the Western Ghats, India, with taxonomic notes on P. mortoni Fraser, 1922 and rediscovery of P. rufostigma Kimmins, 1958.. Zootaxa. 4858(2):zootaxa.4858.2.1.
Vinekar RS, Sowdhamini R.  2016.  Three-dimensional modelling of the voltage-gated sodium ion channel from Anopheles gambiae reveals spatial clustering of evolutionarily conserved acidic residues at the extracellular sites.. Curr Neuropharmacol.
Neelamraju S, Oligschleger C, J Schön C.  2017.  The threshold algorithm: Description of the methodology and new developments.. J Chem Phys. 147(15):152713.
Gilmour KM, Daley MA, Egginton S, Kelber A, McHenry MJ, Patek SN, Sane SP, Schulte PM, Terblanche JS, Wright PA et al..  2023.  Through the looking glass: attempting to predict future opportunities and challenges in experimental biology.. J Exp Biol. 226(24)
Karanth UK, Kumar S, Karanth K.  2020.  Tigers against the odds: Applying macro-ecology to species recovery in India. BIOLOGICAL CONSERVATION. :ArticleNo.108846.
Heltberg ML, Krishna S, Jensen MH.  2017.  Time Correlations in Mode Hopping of Coupled Oscillators. Journal of Statistical Physics. 167(3-4):792–805.
Chawla S, O'Neill J, Knight MI, He Y, Wang L, Maronde E, Rodríguez SGil, van Ooijen G, Garbarino-Pico E, Wolf E et al..  2024.  Timely Questions Emerging in Chronobiology: The Circadian Clock Keeps on Ticking.. J Circadian Rhythms. 22:2.
Jain R, Brockmann A.  2018.  Time-restricted foraging under natural light/dark condition shifts the molecular clock in the honey bee, Apis mellifera.. Chronobiol Int. :1-12.
Chakraborty P, Chattarji S.  2019.  Timing is everything: differential effects of chronic stress on fear extinction.. Psychopharmacology (Berl). 236(1):73-86.
Deshmukh R, Lakhe D, Kunte K.  2020.  Tissue-specific developmental regulation and isoform usage underlie the role of in sex differentiation and mimicry in swallowtails.. R Soc Open Sci. 7(9):200792.
Rana D, Samad I, Rastogi S.  2022.  To a charismatic rescue: Designing a blueprint to steer Fishing Cat conservation for safeguarding Indian wetlands. JOURNAL FOR NATURE CONSERVATION. 68(126225)
Rao R, Alcoverro T, Kongari P, Yoayela S, Arthur R, D'Souza E.  2023.  Tolerance to aerial exposure influences distributional patterns in multi-species intertidal seagrass meadows.. Mar Environ Res. 191:106146.
Basu DNath, Kunte K.  2020.  Tools of the trade: MicroCT reveals native structure and functional morphology of organs that drive caterpillar-ant interactions.. Sci Rep. 10(1):10593.
Srivathsa A, Ramachandran V, Saravanan P, Sureshbabu A, Ganguly D, Ramakrishnan U.  2023.  Topcats and underdogs: intraguild interactions among three apex carnivores across Asia's forestscapes.. Biol Rev Camb Philos Soc.
Cockcroft S, Raghu P.  2016.  Topological organisation of the phosphatidylinositol 4,5-bisphosphate-phospholipase C resynthesis cycle: PITPs bridge the ER-PM gap.. Biochem J. 473(23):4289-4310.