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Singh P, Macdonald DW.  2017.  Populations and activity patterns of clouded leopards and marbled cats in Dampa Tiger Reserve, India. JOURNAL OF MAMMALOGY. 98(5):1453-1462.
Singh J, Raina R, Vinothkumar KR, Anand R.  2022.  Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases.. ACS Chem Biol.
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Singh G, George G, Raja SO, Kandaswamy P, Kumar M, Thutupalli S, Laxman S, Gulyani A.  2023.  A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration.. Proc Natl Acad Sci U S A. 120(24):e2213241120.
Singh A, Vashistha N, Heck J, Tang X, Wipf P, Brodsky JL, Hampton RY.  2020.  Direct involvement of Hsp70 ATP hydrolysis in Ubr1-dependent quality control.. Mol Biol Cell. :mbcE20080541.
Singh N, Prakash A, Chakravarthy SRanganath, Kaushik R, Ladher RK.  2022.  In Ovo and Ex Ovo Methods to Study Avian Inner Ear Development.. J Vis Exp. (184)
Singh A, Thakur NL, Sheikh F.  2022.  Differential tolerance capacity of intertidal organisms (sponge and zoanthid) to the environmental stresses: Preliminary Bndings from a rockpool transplantation experiment. JOURNAL OF EARTH SYSTEM SCIENCE. 131(1)
Singh A, Hulsmeier J, Kandi AReddy, Pothapragada SShruti, Hillebrand J, Petrauskas A, Agrawal K, Rt K, Thiagarajan D, Jayaprakashappa D et al..  2021.  Antagonistic roles for Ataxin-2 structured and disordered domains in RNP condensation.. Elife. 10
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Singh M, Roychowdhury A, Gupta A.  2022.  Defects and metric anomalies in Foppl-von Karman surfaces. PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES. 478(2262):20210829.
Singh J, Udgaonkar JB.  2015.  Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Singh G, Kumar S, Das R.  2023.  Decoding the Assembly of Mixed and Branched Heterotypic Ubiquitin Chains.. Anal Chem. 95(26):10061-10067.
Singh A, Chakrabarti S.  2023.  Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture.. PLoS Comput Biol. 19(12):e1011725.
Singh D, Bhalla USingh.  2018.  Subunit exchange enhances information retention by CaMKII in dendritic spines.. Elife. 7
Singh AS, Shah A, Brockmann A.  2018.  Honey bee foraging induces upregulation of early growth response protein 1, hormone receptor 38 and candidate downstream genes of the ecdysteroid signalling pathway.. Insect Mol Biol. 27(1):90-98.
Singh ASurindro, Takhellambam MChanu, Cappelletti P, Feligioni M.  2020.  Immediate early gene kakusei potentially plays a role in the daily foraging of honey bees.. PLoS One. 15(5):e0222256.
Singh P, Srivathsa A, Macdonald DW.  2020.  Conservation status of the dhole Cuon alpinus in north-east India, with a focus on Dampa Tiger Reserve, Mizoram. ORYX. 54(6):873-877.
Singh A, Krishna S.  2019.  Immunomodulatory and Therapeutic Potential of Marine Flora Products in the Treatment of Cancer. Bioactive Natural Products for the Management of Cancer: from Bench to Bedside . :139-166.
Simões deOliveira L, O'Leary HE, Nawaz S, Loureiro R, Davenport EC, Baxter P, , Dando O, Perkins E, Peltier J et al..  2024.  Enhanced hippocampal LTP but normal NMDA receptor and AMPA receptor function in a rat model of CDKL5 deficiency disorder.. Mol Autism.. 15(1):28.
Silva AP, Mukherjee S, Ramakrishnan U, Fernandes C, Björklund M.  2020.  Closely related species show species-specific environmental responses and different spatial conservation needs: Prionailurus cats in the Indian subcontinent.. Sci Rep. 10(1):18705.
Sil P, Mateos N, Nath S, Buschow S, Manzo C, Suzuki KGN, Fujiwara T, Kusumi A, Garcia-Parajo MF, Mayor S.  2020.  Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane.. Mol Biol Cell. 31(7):561-579.
Sidhanth C, Bindhya S, Krishnapriya S, Manasa P, Shabna A, Alifia J, Patole C, Kumar V, Garg M, Ganesan TS.  2022.  Phosphoproteome of signaling by ErbB2 in ovarian cancer cells.. Biochim Biophys Acta Proteins Proteom. :140768.
Sidhanta SPrakash Da, Sowdhamini R, Srinivasan N.  2025.  Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins.. Proteins. 93(1):197-208.
Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.
Shukla H, Suryamohan K, Khan A, Mohan K, Perumal RC, Mathew OK, Menon R, Dixon MD, Muraleedharan M, Kuriakose B et al..  2022.  Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation. . Gigascience. 12:giac112
Shukla A, Chattarji S.  2021.  Stressed rats fail to exhibit avoidance reactions to innately aversive social calls.. Neuropsychopharmacology.
Shrivastava A, Kamma H, Das R, Ainavarapu SRama Koti.  2025.  Ionic Liquid-Induced Modulation of Ubiquitin Stability: The Dominant Role of Hydrophobic Interactions.. Langmuir. 41(9):5823-5837.
Shrivastava R, Köster D, Kalme S, Mayor S, Neerathilingam M.  2015.  Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro.. PLoS One. 10(4):e0123428.
Shivaprasad PV.  2019.  New clues into the mechanisms of rice domestication.. J Biosci. 44(2)
Shivaprasad PV, Hohn T, Akbergenov R.  2015.  Biochemical requirements for two Dicer-like activities from wheat germ.. PLoS One. 10(1):e0116736.
Shivakumaraswamy S, Kumar S, Bellur A, Polisetty SDev, Balaram H.  2022.  Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme. BIOCHEMISTRY. 61(18):1988-2006.
Shirke PUday, Goswami H, Kumar V, Shah D, Beri S, Das S, Bellare J, Mayor S, Venkatesh KV, Seth JR et al..  2021.  "Viscotaxis"- Directed Migration of Mesenchymal Stem Cells in Response to Loss Modulus Gradient.. Acta Biomater.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Shetty R, Joshi D, Jain M, Vasudevan M, Paul JChrysolite, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K et al..  2018.  Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.. Sci Rep. 8(1):5632.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Shee S, Veetil RT, Mohanraj K, Das M, Malhotra N, Bandopadhyay D, Beig H, Birua S, Niphadkar S, Nagarajan SNarayanan et al..  2023.  Biosensor-integrated transposon mutagenesis reveals as a coordinator of redox homeostasis in .. Elife. 12
Shashidhara LS, Joshi A.  2023.  Not teaching evolution is an injustice.. Science. 380(6652):1303.
Sharma A, Krishna S, Sowdhamini R.  2023.  Bioinformatics analysis of mutations sheds light on the evolution of Dengue NS1 protein with implications in the identification of potential functional and druggable sites.. Mol Biol Evol.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.  2019.  Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Sharma A, Hasan G.  2020.  Modulation of flight and feeding behaviours requires presynaptic IPRs in dopaminergic neurons.. Elife. 9
Sharma Y, Saha S, Joseph A, Krishnan H, Raghu P.  2020.  In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and function. Wellcome Open Res. 5:16.
Sharma A, Tiwari V, Sowdhamini R.  2020.  Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products.. J Biosci. 45
Sharma SDas, Pal R, Reddy BKumar, Selvaraj BT, Raj N, Samaga KKumar, Srinivasan DJ, Ornelas L, Sareen D, Livesey MR et al..  2020.  Cortical neurons derived from human pluripotent stem cells lacking FMRP display altered spontaneous firing patterns.. Mol Autism. 11(1):52.
Sharma S, Zajac M, Krishnan Y.  2020.  A DNA Aptamer for Cyclic Adenosine Monophosphate that Shows Adaptive Recognition.. Chembiochem. 21(1-2):157-162.
Sharma A, Talimarada D, Yadav UPrasad, Singh N, A. Reddy S, Bag D, Biswas K, Baidya A, Borale AN, Shinde D et al..  2020.  Design and Synthesis of New Tubulin Polymerization Inhibitors Inspired from Combretastatin A-4: An Anticancer Agent. ChemistrySelect. 5(37):11560-11572.
Sharma A, Chandrashekar CR, Krishna S, Sowdhamini R.  2024.  Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2.. J Mol Biol. 436(19):168716.
Sharma SDas, Reddy BKumar, Pal R, Ritakari TE, Cooper JD, Selvaraj BT, Kind PC, Chandran S, Wyllie DJA, Chattarji S.  2023.  Astrocytes mediate cell non-autonomous correction of aberrant firing in human FXS neurons.. Cell Rep. 42(4):112344.
Shariq M, Sahasrabuddhe V, Krishna S, Radha S, Bellampalli R, Dwivedi A, Cheramangalam R, Reizis B, Hébert J, Ghosh HS.  2021.  Adult neural stem cells have latent inflammatory potential that is kept suppressed by to facilitate adult neurogenesis.. Sci Adv. 7(21)
Sharda M, Badrinarayanan A, Seshasayee ASai Narain.  2020.  Evolutionary and Comparative analysis of bacterial Non-Homologous End Joining Repair.. Genome Biol Evol.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.  2016.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Shameer K, Naika MBN, K Shafi M, Sowdhamini R.  2019.  Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.. Prog Biophys Mol Biol. 145:19-39.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
Shakeel M, Brockmann A.  2023.  Temporal effects of sugar intake on fly local search and honey bee dance behaviour.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Shaheen I, Malik RA, Sankaran M, Shah MA.  2025.  Differential impacts of grazing on grassland plant diversity, biomass, soil C, and soil N across an elevation gradient. Ecological Applications.
Shah A, Jain R, Brockmann A.  2018.  : A Candidate Transcription Factor Involved in Molecular Processes Underlying Time-Memory.. Front Psychol. 9:865.
K Shafi M, Joshi AG, Meenakshi I, Pasha SNaseer, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  Dataset for the combined transcriptome assembly of and functional annotation.. Data Brief. 30:105416.
K Shafi M, Sajeevan RSivarajan, Kouser S, Vishnuprasad CN, Sowdhamini R.  2022.  Transcriptome profiling of two Moringa species and insights into their antihyperglycemic activity.. BMC Plant Biol. 22(1):561.
K Shafi M, Sowdhamini R.  2022.  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.. BMC Genomics. 23(1):516.
Sezgin E, Levental I, Mayor S, Eggeling C.  2017.  The mystery of membrane organization: composition, regulation and roles of lipid rafts.. Nat Rev Mol Cell Biol.
Setua S, Enguita FJ, Chora ÂFerreira, Ranga-Prasad H, Lahree A, Marques S, Sundaramurthy V, Mota MM.  2020.  Disrupting Plasmodium UIS3-host LC3 interaction with a small molecule causes parasite elimination from host cells.. Commun Biol. 3(1):688.
Setty TGangi, Sarkar A, Coombes D, Dobson RCJ, Subramanian R.  2020.  Structure and Function of -Acetylmannosamine Kinases from Pathogenic Bacteria.. ACS Omega. 5(48):30923-30936.
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Seshasayee ASai Narain.  2025.  Bacterial Genomes Trees and Networks. Bacterial Genomes Trees and Networks. 1:254.
Seshadri A, Badrinarayanan A.  2025.  Exonuclease action of replicative polymerase gamma drives damage-induced mitochondrial DNA clearance. EMBO Reports. :1-21.
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C, De Monte S.  2018.  Ubiquitous abundance distribution of non-dominant plankton across the global ocean.. Nat Ecol Evol.
Senthoorraja R, Subaharan K, Manjunath S, Pragadheesh VShanmugam, Bakthavatsalam N, Mohan MGounder, Senthil-Nathan S, Basavarajappa S.  2021.  Electrophysiological, behavioural and biochemical effect of Ocimum basilicum oil and its constituents methyl chavicol and linalool on Musca domestica L.. Environ Sci Pollut Res Int.
Sengupta I, Udgaonkar J.  2019.  Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Sengupta I, Udgaonkar JB.  2018.  Structural mechanisms of oligomer and amyloid fibril formation by the prion protein.. Chem Commun (Camb).
Sengupta I, Udgaonkar JB.  2017.  Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Sengupta T, Das R, Chattarji S.  2016.  Chronic but not acute immobilization stress stably enhances hippocampal CA1 metabotropic glutamate receptor dependent Long-Term Depression.. Neurosci Lett. 633:101-105.
Sengupta I, Bhate SH, Das R, Udgaonkar JB.  2017.  Salt-mediated oligomerization of the mouse prion protein monitored by real time NMR.. J Mol Biol.
Sen S, Goluguri RReddy, Udgaonkar JB.  2017.  A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Sen S, Kumar H, Udgaonkar JB.  2021.  Microsecond dynamics during the binding-induced folding of an intrinsically disordered protein.. J Mol Biol. :167254.
Sen S, VijayRaghavan K.  2019.  Heinrich Reichert (1949-2019).. Development. 146(16)
Sen S, Udgaonkar JB.  2019.  Binding-induced folding under unfolding conditions: Switching between induced fit and conformational selection mechanisms.. J Biol Chem. 294(45):16942-16952.
Sellamuthu G, Jegadeeson V, Sajeevan RSivarajan, Rajakani R, Parthasarathy P, Raju K, Shabala L, Chen Z-H, Zhou M, Sowdhamini R et al..  2020.  Distinct Evolutionary Origins of Intron Retention Splicing Events in Antiporter Transcripts Relate to Sequence Specific Distinctions in Species.. Front Plant Sci. 11:267.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Scolari VF, Lagomarsino MCosentino.  2015.  Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.. Soft Matter. 11(9):1677-87.
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J.  2017.  Motor control of Drosophila feeding behavior.. Elife. 6
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Schoen JM, Neelakantan A, Cushman SA, Dutta T, Habib B, Jhala YV, Mondal I, Ramakrishnan U, P Reddy A, Saini S et al..  2022.  Synthesizing habitat connectivity analyses of a globally important human-dominated tiger-conservation landscape.. Conserv Biol.
Saxena K, Webster J, Hallas-Potts A, Mackenzie R, Spooner PA, Thomson D, Kind P, Chatterji S, Morris RGM.  2018.  Experiential contributions to social dominance in a rat model of fragile-X syndrome.. Proc Biol Sci. 285(1880)
Saxena K, Chakraborty P, Chattarji S.  2020.  The same stress has divergent effects on social versus asocial manifestations of anxiety-like behavior over time.. Stress. :1-21.
Saxena N, Natesan D, Sane SP.  2018.  Odor source localization in complex visual environments by fruit flies.. J Exp Biol. 221(Pt 2)
SAWANT DATTAPRASAD, JOSHI SHANTANU, PAWAR UJWALA, NAWGE VIRAJ, Kunte K.  2025.  Caliphaea sinuofurcata sp. nov. (Odonata: Zygoptera: Calopterygidae) from Arunachal Pradesh, India. Zootaxa. 5637:139-154.
Sawant D, Joshi S, Pawar U, Naik P, Khan F, Nawge V, Kunte K.  2024.  Devadatta adii sp. nov. (Odonata: Zygoptera: Devadattidae) from Upper Siang District, Arunachal Pradesh, India. ZOOTAXA. 5519(4):571-589.
Sawant D, Joshi S, Pawar U, Naik P, Khan F, Nawge V, Kunte K.  2024.  Devadatta adii sp. nov. (Odonata: Zygoptera: Devadattidae) from Upper Siang District, Arunachal Pradesh, India.. Zootaxa. 5519(4):571-589.
Savory FR, Ramakrishnan U.  2015.  Cryptic diversity and habitat partitioning in an economically important aphid species complex.. Infect Genet Evol. 30:230-7.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.  2019.  Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Sathe M, Muthukrishnan G, Rae J, Disanza A, Thattai M, Scita G, Parton RG, Mayor S.  2018.  Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin-independent endocytosis.. Nat Commun. 9(1):1835.
Sasidharan R, Venkatesan R.  2019.  Seed Elaiosome Mediates Dispersal by Ants and Impacts Germination in Ricinus communis. FRONTIERS IN ECOLOGY AND EVOLUTION. 7
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarkar A, Mukundan N, Sowndarya S, Dubey VKumar, Babu R, Lakshmanan V, Rangiah K, Panicker MM, Palakodeti D, Subramanian SPeruvemba et al..  2019.  Serotonin is essential for eye regeneration in planaria Schmidtea mediterranea.. FEBS Lett.
Sarkar D, Shariq M, Dwivedi D, Krishnan N, Naumann R, Bhalla USingh, Ghosh HS.  2021.  Adult brain neurons require continual expression of the schizophrenia-risk gene Tcf4 for structural and functional integrity.. Transl Psychiatry. 11(1):494.
Sarkar V, Mahapatra C, Mohapatra PP, Nair MV, Kunte K.  2021.  Description of three new species of the genus Mata Distant, 1906 (Hemiptera: Cicadidae: Cicadinae: Oncotympanini) with notes on their natural history from Indian state of Meghalaya, India.. Zootaxa. 4908(1):zootaxa.4908.1.1.
Sarkar SS, Trivedi DV, Morck MM, Adhikari AS, Pasha SN, Ruppel KM, Spudich JA.  2020.  The hypertrophic cardiomyopathy mutations R403Q and R663H increase the number of myosin heads available to interact with actin.. Sci Adv. 6(14):eaax0069.
Sarkar SR, Dubey VKumar, Jahagirdar A, Lakshmanan V, Haroon MMohamed, Sowndarya S, Sowdhamini R, Palakodeti D.  2022.  DDX24 is required for muscle fiber organization and the suppression of wound-induced Wnt activity necessary for pole re-establishment during planarian regeneration.. Dev Biol.
Saravanan B, Soota D, Islam Z, Majumdar S, Mann R, Meel S, Farooq U, Walavalkar K, Gayen S, Singh AKumar et al..  2020.  Ligand dependent gene regulation by transient ERα clustered enhancers.. PLoS Genet. 16(1):e1008516.

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