Prof. Upinder S. Bhalla - GENESIS and Kinetikit
Kinetic library source and binaries for GENESIS: June 2004:
This version of the GENESIS/kinetics code corrects some subtle errors with the adaptive stochastic calculations which caused problems with higher-order and enzymatic reactions in the small N case. The kinetics library source also corrects a bug which caused failure of the kinetics library on some non-Linux systems such as IRIX, and is meant as a plug-in replacement for the genesis2.2.1 kinetics library.
The kinetikit 10 scripts are provided separately for easy download. There is now also a MOOSE alpha version download. It is not yet documented, but there are some demos of recent papers that use it for chemical kinetic simulations using the Gillespie stochastic method.
- Download genesis/src/kinetics source (June 2004), tar-gzipped (62 Kb)
- Download genesis binaries (June 2004) for Linux, gzipped (0.8 Meg)
- Download Kinetikit10 scripts (June 2004), tar-gzipped (180 Kb)
- Download MOOSE alpha version for Linux, (June 2005), gzipped (1.6 Meg)
Kinetikit 11: Dec 2005:
Kinetikit 10 and GENESIS binaries Jan 2004:
- Download genesis, kinetikit 10 (Jan 2004) and demos for STKE, gzipped tar (1.2 Meg)
- Instructions for running the web demo.
Downloading older versions of Kinetikit:
- Download Kinetikit version 7 in gzipped-tar format.
- Download Kinetikit version 7 in Compressed-tar format.
- Downloading GENESIS.
- Download gzipped GENESIS 2.2 beta binaries for Linux.
KKIT 8: Sep 2001: (Updated Aug 2002)
- Download gzipped GENESIS version for kinetikit 8 for Linux.
- Download library of modules and kinetikit 8 in gzipped-tar format
- Nov 2001 updated version of kkit8 in gzipped-tar format
- Dec 2001 updated version of kkit8 in gzipped-tar format
- Feb 2002 updated version of kkit8 in gzipped-tar format
- August 2002 bugfix version of genesis (should work on RH7.3), gzipped
KKIT 9 and GENESIS code Feb 2003:
- Download gzipped GENESIS source for kinetikit 9 for Linux. (18.5 Meg)
- Download gzipped GENESIS binaries for kinetikit 9 for Linux. (0.9 Meg)
- Download gzipped GENESIS binaries for kinetikit 9 for Linux, compiled on gcc3. (0.9 Meg)
- Download kinetikit 9 (Apr 2003) , gzipped tar (0.2 Meg)
- Download kinetikit 9 (Apr 2003), compressed tar (0.3 Meg)
- Download test suite for stochastic simulations (May 2003), gzipped tar (45K)