Author Title Type [ Year(Asc)]
2025
Paramanik' R', Rajput V', Malik V', Nannaware K', Matra S', Joshi S', Kumar S', Samson R', Yadav RK', Shah P' et al..  2025.  Long-Term Genomic Surveillance of SARS-CoV-2 in Campus Wastewater Depicts Lineage Trends and Public Health Implications during and after Omicron Waves.
Pal AKumar, Rana S, Dey R, Shivaprasad PV.  2025.  Loss of function of chromatin remodeler OsCLSY4 leads to RdDM-mediated mis-expression of endosperm-specific genes affecting grain qualities.. PLoS Genet. 21(12):e1011956.
Gregori M, Pereira GJS, Allen R, West N, Chau K-Y, Cai X, Bostock MP, Bolsover SR, Keller M, Lee C-Y et al..  2025.  Lysosomal TPC2 channels disrupt Ca2+ entry and dopaminergic function in models of LRRK2-Parkinson's disease.
Umar I, Gulzar S-E-J, Sundaramurthy V.  2025.  M. tuberculosis surface sulfoglycolipid SL-1 activates the mechanosensitive channel TRPV4 to enhance lysosomal biogenesis and exocytosis in macrophages. Mol Biol Cell. 36(6):ar76.
Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KBharadwaj, Arvind P, Rupanagudi KValli, Maitra A, Nagabandi T et al..  2025.  Mapping genetic diversity with the GenomeIndia project.. Nat Genet. 57(4):767-773.
Puri A, Tripathi V, Das R.  2025.  Measurement of Substrate SUMOylation in Real Time by Fluorescence Spectroscopy.. Methods Mol Biol. 2957:159-168.
Kumar A, Shahul AK, Bhalla USingh.  2025.  Mechanisms and implications of high depolarization baseline offsets in conductance-based neuronal models.. J Neurophysiol.
Manjunath M, Sane SP.  2025.  Mechanosensory cephalic bristles mediate rapid flight initiation in hawkmoths.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Turner LM, Thorpe CJ, Collins M, Raj S, Shukla T, Spicer JI, Knight ME, Sharma D, Kunte K.  2025.  Metabolic Diversity of a Widely Distributed Tropical Freshwater Crab Is Not Underpinned by Genetic Differences. Journal of Biogeography.
NARAYANASAMY NISHANT, BINGHAM EMMA, FADERO TANNER, G. BOZDAG OZAN, RATCLIFF WILLIAMC, YUNKER PETER, THUTUPALLI SHASHI.  2025.  Metabolically driven flows enable exponential growth in macroscopic multicellular yeast.
Rajput V, Pramanik R, Nannaware K, Shah P, Bhalerao A, Jain N, Shashidhara L.S., Kamble S, Dastager S, Dharne M.  2025.  Metagenomics based longitudinal monitoring of antibiotic resistome and microbiome in the inlets of wastewater treatment plants in an Indian megacity.
Philip RGeorge, Bhatia P, Sharma Y, Raghu P.  2025.  Mitochondrial structure and function in OCRL depleted cells.. Front Cell Dev Biol. 13:1679675.
Goyal P, Dhanabalan KV, Scalise M, Friemann R, Indiveri C, Dobson RCJ, Vinothkumar KR, Ramaswamy S.  2025.  Molecular determinants of Neu5Ac binding to a tripartite ATP independent periplasmic (TRAP) transporter.
Agrata R, Das R.  2025.  Monitoring Protein Deamidation in Real Time Using NMR.. Magn Reson Chem.
Soler JAntoni, Singh A, Zerial M, Thutupalli S.  2025.  Motor Function of the Two-Component EEA1-Rab5 Revealed by dcFCCS.. Methods Mol Biol. 2881:87-115.
Krishnan H', Venugopal A', Alex P', Raghu P'.  2025.  The multifaceted phosphatidylinositol 5 phosphate 4-kinase proteins: molecular properties and biological functions.. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids. 1871(1)
Rathore S, Gahlot D, Castin J, Pandey A, Arvindekar S, Viswanath S, Thukral L.  2025.  Multiscale simulations reveal architecture of NOTCH protein and ligand specific features.. Biophys J. 124(2):393-407.
Sane M, Parveen S, Agashe D.  2025.  Mutation bias alters the distribution of fitness effects of mutations.. PLoS Biology.
Dharmaraaj B, Kunte K.  2025.  Natural and sexual selection and functional roles influence colouration but not the amount of variation in butterfly wing colour patterns.. BMC Ecol Evol. 25(1):11.
Zhang Y, Jindal M, Viswanath S, Sitharam M.  2025.  A New Discrete-Geometry Approach for Integrative Docking of Proteins Using Chemical Cross-Links. Journal of Chemical Information and Modeling. 65(9):44576-4592.
Bansal AKumar, Rao M.  2025.  Nonequilibrium asymmetry in the living cell membrane.. Faraday Discuss.
Krishnamoorthy VK, Hamdani F, Shukla P, Rao RArasala, Anaitullah S, Biligiri KKestur, Kadumuri RVarma, Pothula PReddy, Chavali S, Rampalli S.  2025.  NSD3 protein methylation and stabilization transforms human ES cells into variant state.. Life Sci Alliance. 8(3)
Pilon N, Peixoto F, Ratnam J, Sankaran M.  2025.  Open letter: There are more than just trees and forests to be conserved and restored.
Polisetty SDev, Dutta S, Vadnala RNetha, Notani D, Padinhateeri R, Sanyal K.  2025.  Organization principles of dynamic three-dimensional genome architecture associated with centromere clustering states.. Proc Natl Acad Sci U S A. 122(50):e2520310122.
Vivek Hari Sundar Gandhivel, Sotelo-Parrilla P, Raju S, Jha S, Gireesh A, Harshith CY, Gut F, Vinothkumar KR, Berger F, A. Jeyaprakash A et al..  2025.  An Oryza-specific histone H4 variant predisposes H4 lysine 5 acetylation to modulate salt stress responses.
Harshith CY, Palchaudhuri D, Dey R, Raju S, Shivaprasad PV.  2025.  OsWRKY53 dictates wound responses in rice through fine-tuning crosstalk between PEP and PSK-mediated signalling.. Plant J. 123(6):e70481.
Zaidel-Bar R, Agarwal P.  2025.  Outside influences: The impact of extracellular matrix mechanics on cell migration.. Curr Top Dev Biol. 164:29-65.
Walvekar A, Pandey S, Kamat SS, Ladher RK, Vyas N.  2025.  The patterning and proliferation roles of Shh are partitioned on distinct exosomes.. Dev Biol. 528:239-254.
Mann R, Soota D, Das A, Podh NKumar, Mehta G, Notani D.  2025.  Paused RNA polymerase primes promoters via RNA-mediated stabilisation of transcription factor ERα.. Nat Commun. 16(1):9553.
Barneda D, Janardan V, Swales J, Ciaccia M, Goodwin R, Cosulich S, Raghu P, Clark J, Stephens L, Hawkins P.  2025.  Phosphoinositide acyl chain diversity: comparative analysis across species and mouse tissues.
Barneda D, Janardan V, Swales J, Ciaccia M, Goodwin R, Cosulich S, Raghu P, Clark J, Stephens L, Hawkins P.  2025.  Phosphoinositide acyl chain diversity: comparative analysis across species and mouse tissues.. Biochim Biophys Acta Mol Cell Biol Lipids. 1870(6):159640.
K VR.  2025.  The Pioneering Legacy of Veronica Rodrigues in Drosophila Neurobiology. Resonance . 30, pages 1055–1075
Srinivasan S, Pradhan DKumar, Rai S, Biswakarma A, Srinivasan U.  2025.  Poles Apart: The Structure and Composition of the Bird Community in Bamboo in the Eastern Himalaya.
Parida P, Mukherjee N, Singh A, Lewis S, Sharan K, Mallya S, Singh A, Das SSarathi, Rao M, Higginson DS et al..  2025.  Precise identification of viral-host integration events in HPV-positive cervical cancers by targeted long-read sequencing.. Tumour Virus Res. 20:200325.
Nasla N'', Karun J'', K.A. S'', Sandeep P'', H.S. S'', . Jayashree R'', H.V. R'', Dayani. C'', Kumar. C''Rajiv.  2025.  Presence of large trees and tree diversity enhances carbon storage in the Western Ghats.. Biological Conservation. 308
Najeeb N, Jose K, Sreejith K.A, Pulla S, Suresh H.S, Ratnam J, Raghavendra H.V, Chakravarthy D, Chaturvedi RKumar.  2025.  Presence of large trees and tree diversity enhances carbon storage in the Western Ghats. Biological Conservation. 308:111250.
kaushik R, Ladher Rk..  2025.  The primary cilium as a gatekeeper of FGFR2 function.
Deshmukh R, Baral S, Kuwalekar M, Kizhakke AGirish, Kunte K.  2025.  Reproductive Barriers and Genomic Hotspots of Adaptation During Allopatric Species Divergence.. Mol Ecol. :e17703.
Kaushik R, Pandey S, Prakash A, Ganatra F, Abe T, Kiyonari H, Ladher RK.  2025.  Role of Pcdh15 in the development of intrinsic polarity of inner ear hair cells.. PLoS Genet. 21(8):e1011825.
Da W, Rana SK, Bawa K, Kunte K, Wang Z.  2025.  Roof of the world: Home and border in the genomic era. Molecular Ecology Resources.
Sondhi S, Kallies A, Singh RPratap, Roy ABasu, Kunte K.  2025.  Scientific Note: The first confirmed record of the genus Scoliokona Kallies & Arita, 1998 (Lepidoptera: Sesiidae: Sesiinae) from India. Tropical Lepidoptera Research. 35
VijayRaghavan K..  2025.  A Scientist Who Created Institutions With a Lasting Culture. Resonance. 30:1037–1053.
VijayRaghavan K.  2025.  A Scientist Who Created Institutions With a Lasting Culture. Reson . 30, 1037–1053.
Roychowdhury' A, Dasgupta' S, Rao M.  2025.  Segregation, finite-time elastic singularities, and coarsening in renewable active matter. Physical Review E. 112(4)(044414)
9. S K, SD K, H K, LB N, V V, R S, E G-W, BS H, RM B.  2025.  Sensing volatiles throughout the body: geographic- and tissue-specific olfactory receptor expression in the fig wasp.
Lall S, Balaram P, Mathew MK, Gosavi S.  2025.  Sequence of the SARS-CoV-2 Spike Transmembrane Domain Encodes Conformational Dynamics.. J Phys Chem B. 129(1):194-209.
Shaheen' I, Malik' R.A, Sankaran' M, Shah MA.  2025.  Setting up a baseline for long-term ecological monitoring of Kashmir Himalayan grasslands. Grassland Science. 71(4); 204-218
Gautam H, Berzaghi F, Thanikodi M, Ravichandran A, Sreeman SM, Sankaran M.  2025.  Should elephants graze or browse? The nutritional and functional consequences of dietary variation in a mixed-feeding megaherbivore. R Soc Open Sci. 12(11):250939.
Srinivasan DJ, Kapgal V, Morris RGM, Chattarji S.  2025.  Social dominance in rats is a determinant of susceptibility to stress.. Proc Natl Acad Sci U S A. 122(19):e2412314122.
Bartl B, Schoeberl UE, Valieris R, Fitz J, Roeder K, Vinothkumar KR, Gundinger B, Da Silva ITojal, Pavri R.  2025.  Somatic hypermutation patterns are shaped by both motif position and sequence grammar.. EMBO J.
Yau EYu Hin, Jones EE, Tsang TPak Nok, Xing S, Corlett RT, Roehrdanz P, Lohman DJ, Lee AKai Chi, Hai CWai Ching, Chowdhury S et al..  2025.  Spatial occurrence records and distributions of tropical Asian butterflies.
Borer E, Seabloom E, Slette I, Wilfahrt P, Asmus A, Sankaran M.  2025.  Species cover, community biomass, and richness in global grasslands from NutNet (2007–2023): Dominant species predict plant richness and biomass in global grasslands.
Reddy PPurushotha, Phale A, Das R.  2025.  Structural analysis of genetic variants of the human tumor suppressor Palb2 coiled-coil domain.. Biosci Rep.
, Kasinathan S, Bhat K, Ratnam J, Sankaran M, Mudappa D, Raman T.RShankar, Osuri AM.  2025.  Structure and dynamics of secondary and mature rainforests: insights from South Asian long-term monitoring plots. Plant Ecology & Diversity.
Virdi S, Sane SP.  2025.  Structure of the Femoral Chordotonal Organ in the Oleander Hawkmoth, Daphnis nerii.. The Journal of Comparative Neurology. 533(2):e70022.
Ravichandran A, Puri A, Bhate SH, Habibullah BIsmail, Singh G, Das R.  2025.  Structure-guided engineering of protein stability through core hydrophobicity.. Protein Sci. 34(12):e70360.
Dileep M, Sharma A, Kasturacharya N, Nizami SKavish, Manjila S, Bhan A, Hasan G.  2025.  Synergism of IP3R and Parkin mutants identifies mitochondrial stress as an early feature of Parkinson's Disease.. Dis Model Mech.
Kumar M, Sane S, Murali A, Thutupalli S.  2025.  Temperature switchable self-propulsion activity of liquid crystalline microdroplets.. Soft Matter.
Chakraborty N, Ameta S, Thutupalli S.  2025.  Temperature-Driven Catalytic Switching Enables Sequence-Dependent Amplification of Autocatalytic Ribozymes in Coacervates.. Small. :e07108.
Ganguly D, Srivathsa A, Vasudev D, Ramakrishnan U.  2025.  Three's Company: Human infrastructure and diminishing savannas accentuate meso-carnivore interactions in a shared landscape of western India..
Laurance WF, Ramakrishnan U.  2025.  Tiger turnaround as populations grow in India.. Nature. 640(8059):603-604.
Saini SSingh, Ladher RK.  2025.  Timing of Delamination of Inner Ear Neurons Specifies Their Topography and Target Innervation.. J Comp Neurol. 533(11):e70103.
Aniruddh S, Mayank K, Jayashree R, Vasant S, Mahesh S.  2025.  Towards Greener Pastures: An Overview of Pastoral Economics, Policies and Ecologies in India. Economic & Political Weekly.
Chhattani H, Harihar A, Dean R, Yadav A, Patel K, Rana D, Pandit A, Shukla SKumar, Rahim V, Ramakrishnan U.  2025.  Trace DNA from kill sites identifies individual predators. Biological Conservation. 307:111117.
Prasad M, Shetty P, Pal AKumar, Rigó G, Kant K, Zsigmond L, Nagy I, Shivaprasad PV, Szabados L.  2025.  Transcriptional and epigenomic changes in response to PEG-triggered osmotic stress in rapeseed (Brassica napus L.).. J Exp Bot.
CHANDRAN AYIKKARAVIVEK, SAWANT DATTAPRASAD, CHANDRAN REJI, KOPARDE PANKAJ, JOSE SUBINKANIYAMATT, Kunte K.  2025.  Two new species of Merogomphus Martin, 1904 (Odonata: Anisoptera: Gomphidae) from the Western Ghats, India. Zootaxa. 5588(2):201-226.
Ravichandran A, Nallusamy S, Selvamani SBabu, Sowdhamini R.  2025.  Uncovering the transcription factors and metabolic pathways unique to proso millet and foxtail millet under salt stress through a comparative transcriptome approach.
Parvathy J', Yazhini A', Srinivasan N', Sowdhamini R'.  2025.  Understanding the roles of secondary shell hotspots in protein-protein complexes. Proteins: Structure, Function, and Bioinformatics.
Majumdar S, Bammidi LSowjanya, Naik HC, Manhas A, Baro R, Kalita A, Naskar AJyoti, Nidharshan S, Bariha GS, Notani D et al..  2025.  upstream deletion leads to dysregulation of and autosomal gene expression.. Genome Res.
Dhingra S, Téletchéa S, Sowdhamini R, Sanejouand Y-H, de Brevern AG, Cadet F, Offmann B.  2025.  Using protein blocks to build custom fragment libraries from protein structures.. Biochimie.
2024
Bohra D, Islam Z, Nidharshan S, Mazumder A, Notani D.  2024.  Acute Activation of Genes Through Transcriptional Condensates Impact Non-target Genes in a Chromatin Domain. eLife.
Vaishnav MS, Kumari N, Srikanta S, Simha V, Krishnaswamy PR, Balaram P, Bhat N.  2024.  Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications.. Metab Syndr Relat Disord. 22(5):372-384.
Viswanath S.  2024.  AlphaFold opens the doors to deorphanizing secreted proteins.. Cell Syst. 15(11):1000-1001.
Jhaveri R, Cannanbilla L, Bhat KSArpitha, Sankaran M, Krishnadas M.  2024.  Anatomical traits explain drought response of seedlings from wet tropical forests.. Ecol Evol. 14(9):e70155.
Rathod SG, Singh A, Mantri VA.  2024.  Ascertaining the spatiotemporal variations in seaweed assemblages associated with the endemic seaweed Ulva ovata along selected locations of the Gulf of Khambhat, India. AQUATIC ECOLOGY.
Cherian P, Kshirsagar J, Neekhra B, Deshkar G, Hayatnagarkar H, Kapoor K, Kaski C, Kathar G, Khandekar S, Mookherjee S et al..  2024.  BharatSim: An agent-based modelling framework for India.. PLoS Comput Biol. 20(12):e1012682.
Collins DM, Janardan V, Barneda D, Anderson KE, Niewczas I, Taylor D, Qiu D, Jessen HJ, Lopez-Clavijo AF, Walker S et al..  2024.  CDS2 expression regulates de novo phosphatidic acid synthesis.. Biochem J. 481(20):1449-1473.
Sreepadmanabh M, Ganesh M, Sanjenbam P, Kurzthaler C, Agashe D, Bhattacharjee T.  2024.  Cell shape affects bacterial colony growth under physical confinement.. Nat Commun. 15(1):9561.
Raghu P, Sharma Y, Devi ABhuvanendr, Krishnan H.  2024.  Challenges and opportunities for discovering the biology of rare genetic diseases of the brain.. J Biosci. 49
Zhang C, Joseph AMary, Casini L, Collier J, Badrinarayanan A, Manley S.  2024.  Chromosome organization shapes replisome dynamics in Caulobacter crescentus.. Nat Commun. 15(1):3460.
Joshi A, Ratnam J, Paramjyothi H, Sankaran M.  2024.  Climate and vegetation collectively drive soil respiration in montane forest-grassland landscapes of the southern Western Ghats, India. Journal of Tropical Ecology. 40
Carvalho APaula S, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT et al..  2024.  Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature.. iScience. 27(4):109336.
Nayak S, Regati DReddy, Sowdhamini R.  2024.  Computational analysis of human gut microbial prolyl oligopeptidases (POPs) reveal candidate genes as therapeutics for celiac disease.. Sci Rep. 14(1):19641.
Sharma A, Chandrashekar CR, Krishna S, Sowdhamini R.  2024.  Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2.. J Mol Biol. 436(19):168716.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Adamala KP, Agashe D, Belkaid Y, Bittencourt DMatias de, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM et al..  2024.  Confronting risks of mirror life.. Science. 386(6728):1351-1353.
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Thutupalli S.  2024.  The cost of cellular patterns. Nature Physics. 20:1704–1705.
Hussain N, Apotikar A, Pidathala S, Mukherjee S, Burada AP, Sikdar SK, Vinothkumar KR, Penmatsa A.  2024.  Cryo-EM structures of pannexin 1 and 3 reveal differences among pannexin isoforms.. Nat Commun. 15:2942.
Narah J, Streinzer M, Chakravorty J, Megu K, Spaethe J, Brockmann A, Schmitt T.  2024.  Cuticular Hydrocarbon Profiles of Himalayan Bumble Bees (Hymenoptera: Bombus Latreille) are Species-Specific and Show Elevational Variation.. J Chem Ecol.
Joshi S, Sarkar V, Sawant D, Pawar U, Kunte K.  2024.  Description of Protosticta khasia sp. nov. and Yunnanosticta siangi sp. nov., with new records of P. samtsensis Gurung & Phan, 2023 from Northeast India (Odonata: Zygoptera: Platystictidae).. Zootaxa. 5448(3):348-370.
Sreepadmanabh M, Arun AB, Bhattacharjee T.  2024.  Design approaches for 3D cell culture and 3D bioprinting platforms.. Biophys Rev (Melville). 5(2):021304.
Sawant D, Joshi S, Pawar U, Naik P, Khan F, Nawge V, Kunte K.  2024.  Devadatta adii sp. nov. (Odonata: Zygoptera: Devadattidae) from Upper Siang District, Arunachal Pradesh, India. ZOOTAXA. 5519(4):571-589.
Sawant D, Joshi S, Pawar U, Naik P, Khan F, Nawge V, Kunte K.  2024.  Devadatta adii sp. nov. (Odonata: Zygoptera: Devadattidae) from Upper Siang District, Arunachal Pradesh, India.. Zootaxa. 5519(4):571-589.
Kumar S, Ghosh S, Shanavas N, Sivaramakrishnan V, Dwari M, Das S.  2024.  Development of pial collaterals by extension of pre-existing artery tips.. Cell Rep. 43(10):114771.
Mishra S, Bansal M, Prasad V, Singh VPartap, Murthy S, Parmar S, Utescher T, Khangar R.  2024.  Did the Deccan Volcanism impact the Indian flora during the Maastrichtian? EARTH-SCIENCE REVIEWS. 258(104950)
Rana D, Sartor CC, Chiaverini L, Cushman SA, Kaszta Z, Ramakrishnan U., Macdonald DW.  2024.  Differentially biased sampling strategies reveal the non-stationarity of species distribution models for Indian small felids. ECOLOGICAL MODELLING. 493
Agrawal K, Prabhakar S, Bakthavachalu B, Chaturvedi D.  2024.  Distinct developmental patterns in Anopheles stephensi organ systems.. Dev Biol. 508:107-122.
Sanjenbam P, Agashe D.  2024.  Divergence and convergence in epiphytic and endophytic phyllosphere bacterial communities of rice landraces.. mSphere. :e0076524.
Khan A, Sil M, Thekaekara T, Garg KM, Sinha I, Khurana R, Sukumar R, Ramakrishnan U.  2024.  Divergence and serial colonization shape genetic variation and define conservation units in Asian elephants.. Curr Biol.

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