Author Title Type [ Year(Asc)]
2023
Gautam S, Mahapa A, Yeramala L, Gandhi A, Krishnan S, Vinothkumar KR, Chatterji D.  2023.  Regulatory mechanisms of c-di-AMP synthase (MsDisA) protein from Mycobacterium smegmatis revealed by a structure - function analysis.. Protein Sci. :e4568.
Jain I, Rao M, Tran PT.  2023.  Reliable and robust control of nucleus centering is contingent on nonequilibrium force patterns.. iScience. 26(5):106665.
Kaushik A, Udgaonkar JB.  2023.  Replacement of the native cis prolines by alanine leads to simplification of the complex folding mechanism of a small globular protein.. Biophys J.
Bellur A, Das S, Jayaraman V, Behera S, Suryavanshi A, Balasubramanian S, Balaram P, Jindal G, Balaram H.  2023.  Revisiting the Burden Borne by Fumarase: Enzymatic Hydration of an Olefin.. Biochemistry.
Agashe D, Sane M, Singhal S.  2023.  Revisiting the Role of Genetic Variation in Adaptation. AMERICAN NATURALIST .
Da W., Rana S.K, Bawa K., Kunte K., Wang Z..  2023.  Roof of the world: Home and border in the genomic era. Molecular Ecology Resources.
Puri M, Srivathsa A, Karanth KK, Patel I, N. Kumar S.  2023.  Safe space in the woods: Mechanistic spatial models for predicting risks of human-bear conflicts in India. BIOTROPICA . 55(2):504-516.
Lamba S, Ganesan S, Daroch N, Paul K, Joshi SGopal, Sreenivas D, Nataraj A, Srikantaiah V, Mishra R, Ramakrishnan U et al..  2023.  SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater - a longitudinal study in Bengaluru, India.. Lancet Reg Health Southeast Asia. :100151.
Sane M, Diwan GD, Bhat BA, Wahl LM, Agashe D.  2023.  Shifts in mutation spectra enhance access to beneficial mutations.. Proc Natl Acad Sci U S A.. 120(22):e2207355120.
Kamat A, Badrinarayanan A.  2023.  SOS-independent bacterial DNA damage responses: diverse mechanisms, unifying function.. Curr Opin Microbiol. 73:102323.
Kasturacharya N, Dhall JKaur, Hasan G.  2023.  A STIM dependent dopamine-neuropeptide axis maintains the larval drive to feed and grow in Drosophila.. PLoS Genet. 19(6):e1010435.
Vinothkumar KR.  2023.  Structural heterogeneity of the Rieske iron-sulfur protein in a yeast complex III.. IUCrJ. 10(Pt 1):1-3.
Tiwari V, Sowdhamini R.  2023.  Structural modelling and dynamics of full-length of TLR10 sheds light on possible modes of dimerization, ligand binding and mechanism of action.. Curr Res Struct Biol. 5:100097.
Krishnan H, Basak B, Nath VR, Mishra S, Raghu P.  2023.  Structural organization of RDGB (retinal degeneration B), a multi-domain lipid transfer protein: a molecular modelling and simulation based approach.. J Biomol Struct Dyn. :1-15.
Bhattacharyya T, Ghosh A, Verma S, Raghu P, Sowdhamini R.  2023.  Structural rationale to understand the effect of disease-associated mutations on Myotubularin.. Curr Res Struct Biol. 5:100100.
Ahmad M, Jha B, Bose S, Tiwari S, Dwivedy A, Kar D, Pal R, Mariadasse R, Parish T, Jeyakanthan J et al..  2023.  Structural snapshots of Mycobacterium tuberculosis enolase reveal dual mode of 2PG binding and its implication in enzyme catalysis.. IUCrJ. 10(Pt 6):738-753.
Tiwari V, Sowdhamini R.  2023.  Structure modelling of odorant receptor from and identification of potential repellent molecules.. Comput Struct Biotechnol J. 21:2204-2214.
Mayor S, Bhat A, Kusumi A.  2023.  A Survey of Models of Cell Membranes: Toward a New Understanding of Membrane Organization.. Cold Spring Harb Perspect Biol. 15(10)
Ananthamurthy KG, Bhalla US.  2023.  Synthetic Data Resource and Benchmarks for Time Cell Analysis and Detection Algorithms.. eNeuro.
Alam SSahajada M, Samanta A, Uddin F, Ali S, Hoque M.  2023.  Tanshinone IIA targeting cell signaling pathways: a plausible paradigm for cancer therapy.. Pharmacol Rep.
Basu DNath, Bhaumik V, Kunte K.  2023.  The tempo and mode of character evolution in the assembly of mimetic communities.. Proc Natl Acad Sci U S A. 120(1):e2203724120.
Shakeel M, Brockmann A.  2023.  Temporal effects of sugar intake on fly local search and honey bee dance behaviour.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Panicker D, Stafford KM.  2023.  Temporal variability of a soundscape near a mid-oceanic atoll in the northern Indian ocean. PROGRESS IN OCEANOGRAPHY . 214:103033.
Raju A, Xue BK, Leibler S.  2023.  A theoretical perspective on Waddington's genetic assimilation experiments.. Proc Natl Acad Sci U S A. 120(51):e2309760120.
Gilmour KM, Daley MA, Egginton S, Kelber A, McHenry MJ, Patek SN, Sane SP, Schulte PM, Terblanche JS, Wright PA et al..  2023.  Through the looking glass: attempting to predict future opportunities and challenges in experimental biology.. J Exp Biol. 226(24)
Rao R, Alcoverro T, Kongari P, Yoayela S, Arthur R, D'Souza E.  2023.  Tolerance to aerial exposure influences distributional patterns in multi-species intertidal seagrass meadows.. Mar Environ Res. 191:106146.
Srivathsa A, Ramachandran V, Saravanan P, Sureshbabu A, Ganguly D, Ramakrishnan U.  2023.  Topcats and underdogs: intraguild interactions among three apex carnivores across Asia's forestscapes.. Biol Rev Camb Philos Soc.
Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ESandro, Cusseddu D, Desai MM et al..  2023.  Towards evolutionary predictions: Current promises and challenges.. Evol Appl. 16(1):3-21.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
Mann R, Notani D.  2023.  Transcription factor condensates and signaling driven transcription.. Nucleus. 14(1):2205758.
Chauhan PKumar, Sowdhamini R.  2023.  Transcriptome data analysis of primary cardiomyopathies reveals perturbations in arachidonic acid metabolism.. Front Cardiovasc Med. 10:1110119.
Syiem BL, Driscoll DA, Vasudev D, Goswami VR.  2023.  Tropical agricultural wooded land uses support high site use of forest birds. Biological Conservation. 281:109986.
Nazareth O, Srivathsa A, Ramachandran V.  2023.  Trunks and treetops: integrating terrestrial and arboreal camera-trap surveys to document elusive mammal communities in India. MAMMAL RESEARCH.
Singh A, Soler JAntoni, Lauer J, Grill SW, Jahnel M, Zerial M, Thutupalli S.  2023.  Two-component molecular motor driven by a GTPase cycle. NATURE PHYSICS.
Garcia-Parajo MF, Mayor S.  2023.  The ubiquitous nanocluster: A molecular scale organizing principle that governs cellular information flow.. Curr Opin Cell Biol. 86:102285.
Viswan NAnn, Bhalla USingh.  2023.  Understanding molecular signaling cascades in neural disease using multi-resolution models.. Curr Opin Neurobiol. 83:102808.
Nandavaram A, Nandakumar A, Kashif GM, Sagar ALakshman, Shailaja G, Ramesh A, Siddavattam D.  2023.  Unusual Relationship between Iron Deprivation and Organophosphate Hydrolase Expression.. Appl Environ Microbiol. :e0190322.
Sreedharan V, Bhalla US, Ramakrishnan N.  2023.  Using sensitivity analyses to understand bistable system behavior.. BMC Bioinformatics. 24(1):136.
Ansil BR, George CElizabeth, Chandrasingh S, Viswanathan A, Thattai M, Raghu P, Devadiga S, Harikumar AGeetha, Harsha PKandi, Nair I et al..  2023.  Validating saliva as a biological sample for cost-effective, rapid and routine screening for SARS-CoV-2. INDIAN JOURNAL OF MEDICAL MICROBIOLOGY. 45(100384)
Sane SP, Manjunath M, Mukunda CL.  2023.  Vestibular feedback for flight control in hawkmoths.. Trends Neurosci.
Rao M.  2023.  A view from the President of the Indian Biophysical Society.. Biophys Rev. 15(3):305-306.
Stotrabhashyam S, Sharma N, Kumar A, Sinha A.  2023.  Winter foraging ecology of stump-tailed macaques in the Hollongapar Gibbon Sanctuary, Assam, India.. J Biosci. 48
2022
Lahree A, Baptista Sde Jesus S, Marques S, Perschin V, Zuzarte-Luís V, Goel M, Choudhary HHasan, Mishra S, Stigloher C, Zerial M et al..  2022.  Active APPL1 sequestration by Plasmodium favors liver-stage development.. Cell Rep. 39(9):110886.
Saha S, Das A, Patra C, Anilkumar AA, Sil P, Mayor S, Rao M.  2022.  Active emulsions in living cell membranes driven by contractile stresses and transbilayer coupling. Proc Natl Acad Sci U S A.. 119(30):e2123056119.
Natesan R, Gowrishankar K, Kuttippurathu L, Kumar PBSunil, Rao M.  2022.  Active Remodeling of Chromatin and Implications for Folding.. J Phys Chem B.
Bansal A, Das A, Rao M.  2022.  Active segregation dynamics in the living cell. INDIAN JOURNAL OF PHYSICS.
Barneda D, Janardan V, Niewczas I, Collins DM, Cosulich S, Clark J, Stephens LR, Hawkins PT.  2022.  Acyl chain selection couples the consumption and synthesis of phosphoinositides.. EMBO J. :e110038.
Panda A, Thakur R, Kumari A, Raghu P.  2022.  Analysis of Lipid Signaling in Drosophila Photoreceptors using Mass Spectrometry.. J Vis Exp. (181)
Jha RRaj, Isvaran K.  2022.  Antelope space-use and behavior indicate multilevel responses to varying anthropogenic influences in a highly human-dominated landscape.. Ecol Evol. 12(10):e9372.
Choudhury SDey, Dwivedi MKumar, Pippadpally S, Patnaik A, Mishra S, Padinjat R, Kumar V.  2022.  AP2 regulates Thickveins trafficking to attenuate NMJ growth signaling in .. eNeuro.
Kitnya N, Otis GW, Chakravorty J, Smith DR, Brockmann A.  2022.  Apis laboriosa confirmed by morphometric and genetic analyses of giant honey bees (Hymenoptera, Apidae) from sites of sympatry in Arunachal Pradesh, North East India. APIDOLOGIE. 53(4):47.
Kumar M, Singh A, Del Secco B, Baranov MV, van den Bogaart G, Sacanna S, Thutupalli S.  2022.  Assembling anisotropic colloids using curvature-mediated lipid sorting.. Soft Matter.
Krishnan A, Osuri AM.  2022.  Beyond the passive-active dichotomy: aligning research with the intervention continuum framework of ecological restoration. RESTORATION ECOLOGY .
Krishna S, Prasad R.  2022.  Building Indian Biomedical Leadership to Bridge the Gap Between Science, Primary Health Care and Public Health.. J Indian Inst Sci. :1-7.
Joshi S, Sawant D, Ogale H, Kunte K.  2022.  Burmagomphus chaukulensis, a new species of dragonfly (Odonata: Anisoptera: Gomphidae) from the Western Ghats, Maharashtra, India. ZOOTAXA . 5133(3):413-430.
Garcia-Font N, Mitchell-Heggs R, Saxena K, Gabbert C, Taylor G, Mastroberadino G, Spooner PA, Gobbo F, Dabrowska JK, Chattarji S et al..  2022.  Ca2+ imaging of self and other in medial prefrontal cortex during social dominance interactions in a tube test.. Proc Natl Acad Sci U S A. 119(31):e2107942119.
Bagchi B, Seal S, Raina M, Basu DNath, Khan I.  2022.  Carcass Scavenging Relaxes Chemical-Driven Female Interference Competition in Flour Beetles. AMERICAN NATURALIST.
Agashe D, Maheshwary S, Pattanaik JKumar, Prakash J, Bhatt P, Arya S.S, Chatterjee S, Kumar P, Singh P, Abbas N et al..  2022.  Career challenges for young independent researchers in India. CURRENT SCIENCE. 122(2):135-143.
Srivathsa A, Banerjee A, Banerjee S, Chawla MMathew, Das A, Ganguly D, Rodrigues RG, Adhya T, Bhatia S, Kshettry A et al..  2022.  Chasms in charismatic species research: Seventy years of carnivore science and its implications for conservation and policy in India. BIOLOGICAL CONSERVATION . 273(109694)
Anujan K, Ratnam J, Sankaran M.  2022.  Chronic browsing by an introduced mammalian herbivore in a tropical island alters species composition and functional traits of forest understory plant communities. BIOTROPICA .
Eriksson O, Bhalla USingh, Blackwell KT, Crook SM, Keller D, Kramer A, Linne M-L, Saudargienė A, Wade RC, Kotaleski JHellgren.  2022.  Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows.. Elife. 11
Morin DJ, Boulanger J, Bischof R, Lee DC, Ngoprasert D, Fuller AK, McLellan B, Steinmetz R, Sharma S, Garshelis D et al..  2022.  Comparison of methods for estimating density and population trends for low-density Asian bears. GLOBAL ECOLOGY AND CONSERVATION. 35(e02058)
K Shafi M, Sowdhamini R.  2022.  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.. BMC Genomics. 23(1):516.
Bheemireddy S, Sandhya S, Srinivasan N, Sowdhamini R.  2022.  Computational tools to study RNA-protein complexes.. Front Mol Biosci. 9:954926.
Coetsee C., Wigley B.J, Sankaran M., Ratnam J., Augustine D.J.  2022.  Contrasting Effects of Grazing vs Browsing Herbivores Determine Changes in Soil Fertility in an East African Savanna. ECOSYSTEMS .
Prakash A, Agashe D, Khan I.  2022.  The costs and benefits of basal infection resistance vs immune priming responses in an insect.. Dev Comp Immunol. 126:104261.
Tirumalai V, Narjala A, Swetha C, G Sundar VHari, Sujith TN, Shivaprasad PV.  2022.  Cultivar-specific miRNA-mediated RNA silencing in grapes.. Planta. 256(1):17.
Sahasrabuddhe V, Ghosh HS.  2022.  Cx3Cr1-Cre induction leads to microglial activation and IFN-1 signaling caused by DNA damage in early postnatal brain.. Cell Rep. 38(3):110252.
Tanalgo KC, Tabora JAries G, de Oliveira HFernandes, Haelewaters D, Beranek CT, Otálora-Ardila A, Bernard E, Gonçalves F, Eriksson A, Donnelly M et al..  2022.  DarkCideS 1.0, a global database for bats in karsts and caves.. Sci Data. 9(1):155.
Dua N, Seshadri A, Badrinarayanan A.  2022.  DarT-mediated mtDNA damage induces dynamic reorganization and selective segregation of mitochondria.. J Cell Biol. 221(10)
Sarkar SR, Dubey VKumar, Jahagirdar A, Lakshmanan V, Haroon MMohamed, Sowndarya S, Sowdhamini R, Palakodeti D.  2022.  DDX24 is required for muscle fiber organization and the suppression of wound-induced Wnt activity necessary for pole re-establishment during planarian regeneration.. Dev Biol.
Rajagopal D, Sopory SK, Mathew M.K.  2022.  Dealing with Environmental Fluctuations: Diversity of Potassium Uptake Systems Across the Three Domains of Life. JOURNAL OF PLANT GROWTH REGULATION .
Singh J, Raina R, Vinothkumar KR, Anand R.  2022.  Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases.. ACS Chem Biol.
Singh M, Roychowdhury A, Gupta A.  2022.  Defects and metric anomalies in Foppl-von Karman surfaces. PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES. 478(2262):20210829.
Swetha C, Narjala A, Pandit A, Tirumalai V, Shivaprasad PV.  2022.  Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs.. BMC Genomics. 23(1):53.
Amarasinghe AAThasun, Ganesh S.R., Mirza ZA, Campbell PD, Pauwels OSG, Schweiger S, Kupfer A, Patel H, Karunarathna S, Deuti K et al..  2022.  The delusion of stripes: A century-old mystery of five-lined sun skinks (Reptilia: Scincidae: Eutropis) of Peninsular India elucidated. Zoologischer Anzeiger. 296:71-90.
Owen CL, Marshall DC, Wade EJ, Meister R, Goemans G, Kunte K, Moulds M, Hill K, Villet M, Pham T-H et al..  2022.  Detecting and removing sample contamination in phylogenomic data: an example and its implications for Cicadidae phylogeny (Insecta: Hemiptera).. Syst Biol.
Uddin A, Malla JA, Kumar H, Kumari M, Sinha S, Sharma VK, Kumar Y, Talukdar P, Lahiri M, Maiti TK et al..  2022.  Development of a Systematic Strategy toward Promotion of α-Synuclein Aggregation Using 2-Hydroxyisophthalamide-Based Systems. . Biochemistry.
Mondal S, K Shafi M, Raizada A, Song H, Badigannavar AM, Sowdhamini R.  2022.  Development of candidate gene-based markers and map-based cloning of a dominant rust resistance gene in cultivated groundnut (Arachis hypogaea L.).. Gene. 827:146474.
Singh A, Thakur NL, Sheikh F.  2022.  Differential tolerance capacity of intertidal organisms (sponge and zoanthid) to the environmental stresses: Preliminary Bndings from a rockpool transplantation experiment. JOURNAL OF EARTH SYSTEM SCIENCE. 131(1)
Bhattacharjee R, Udgaonkar JB.  2022.  Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein.. Protein Sci. :e4513.
Prakash DL, Gosavi S.  2022.  The diversity of protein-protein interaction interfaces within T=3 icosahedral viral capsids. Front Mol Biosci. . 9:967877
Pulipati S, Somasundaram S, Rana N, Kumaresan K, Shafi M, Civan P, Sellamuthu G, Jaganathan D, Ramaravi PVenkatesan, Punitha S. et al..  2022.  Diversity of Sodium Transporter HKT1;5 in Genus Oryza. RICE SCIENCE. 29(1):31-46.
Prasad M, Kataria P, Ningaraju S, Buddidathi R, Bankapalli K, Swetha C, Susarla G, Venkatesan R, D'Silva P, Shivaprasad PV.  2022.  Double DJ-1 domain containing Arabidopsis DJ-1D is a robust macromolecule deglycase.. New Phytol.
Joshi AG, Praveen P, Ramakrishnan U, Sowdhamini R.  2022.  Draft genome sequence of an invasive plant .. Bioinformation. 18(9):739-741.
Trisal S, Aranha M, Chodankar A, VijayRaghavan K, Ramaswami M.  2022.  A DROSOPHILA CIRCUIT FOR HABITUATION OVERRIDE.. J Neurosci.
Kalmankar NV, Pavalam M, Indrakumar S, Srinivasan N, Sowdhamini R.  2022.  DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.. Database (Oxford). 2022
Naik D, R. Rao SPrasad, Kunte K, Mustak MS.  2022.  Ecological monitoring and indicator taxa: butterfly communities in heterogeneous landscapes of the Western Ghats and Malabar coast, India. JOURNAL OF INSECT CONSERVATION.
Rebehmed J, de Brevern AG, Sowdhamini R, Joseph APraveen.  2022.  Editorial: Advances in Molecular Docking and Structure-Based Modelling.. Front Mol Biosci. 9:839826.
Nataraj N, Hussain M, Ibrahim M, Hausmann AE, Rao S, Kaur S, Khazir J, Mir BAhmad, Olsson SB.  2022.  Effect of Altitude on Volatile Organic and Phenolic Compounds of Artemisia brevifolia Wall ex Dc. From the Western Himalayas. FRONTIERS IN ECOLOGY AND EVOLUTION. 10(864728)
Kalmankar NV, Gehi BRajendraku, Sowdhamini R.  2022.  Effects of a plant cyclotide on conformational dynamics and destabilization of β-amyloid fibrils through molecular dynamics simulations.. Front Mol Biosci. 9:986704.
Urban L, De Niz M, Fernández-Chiappe F, Ebrahimi H, Han LKM, Mehta D, Mencia R, Mittal D, Ochola E, Quezada CPaz et al..  2022.  eLife's new model and its impact on science communication.. Elife. 11
Kumar H, Udgaonkar JB.  2022.  Elongation of Fibrils Formed by a Tau Fragment is Inhibited by a Transient Dimeric Intermediate.. J Phys Chem B.
Rajagopal S, Brockmann A, George EAntony.  2022.  Environment-dependent benefits of interindividual variation in honey bee recruitment. ANIMAL BEHAVIOUR. 192:9-26.
Pal S., Udgaonkar JB.  2022.  Evolutionarily conserved proline residues impede the misfolding of the mouse prion protein by destabilizing an aggregation-competent partially unfolded form . J Mol Biol..
Agarwal I, Bauer AM, Gamble T, Giri VB, Jablonski D, Khandekar A, Mohapatra PP, Masroor R, Mishra A, Ramakrishnan U.  2022.  The evolutionary history of an accidental model organism, the leopard gecko Eublepharis macularius (Squamata: Eublepharidae).. Mol Phylogenet Evol. :107414.
Mahajan S, Agashe D.  2022.  Evolutionary jumps in bacterial GC content.. G3 (Bethesda).
Naika MBN, Sathyanarayanan N, Sajeevan RSivarajan, Bhattacharyya T, Ghosh P, Iyer MS, Jarjapu M, Joshi AG, Harini K, K Shafi M et al..  2022.  Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).. Sci Rep. 12(1):13534.
Bhalla US.  2022.  Face neurons and super-normal stimuli:A window into visual processing.. J Biosci. 47
Varma A.  2022.  Feeling like a 'real' scientist.. Elife. 11

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