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Malhotra P, Udgaonkar JB.  2022.  Native State Hydrogen Exchange-Mass Spectrometry Methods to Probe Protein Folding and Unfolding.. Methods Mol Biol. 2376:143-159.
Malhotra N, Seshasayee ASai Narain.  2022.  Replication-dependent organisation constrains positioning of long DNA repeats in bacterial genomes.. Genome Biol Evol.
Malhotra S, Sowdhamini R.  2015.  Collation and analyses of DNA-binding protein domain families from sequence and structural databanks.. Mol Biosyst. 11(4):1110-8.
Malhotra P, Udgaonkar JB.  2016.  How cooperative are protein folding and unfolding transitions? Protein Sci.
Malhotra P, Udgaonkar JB.  2015.  Tuning Cooperativity on the Free Energy Landscape of Protein Folding.. Biochemistry. 54(22):3431-41.
Malhotra P, Jethva PN, Udgaonkar JB.  2017.  Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding.. Biochemistry. 56(31):4053-4063.
Malhotra P, Udgaonkar JB.  2016.  Secondary Structural Change Can Occur Diffusely and Not Modularly during Protein Folding and Unfolding Reactions.. J Am Chem Soc. 138(18):5866-78.
Mak S-S, Wrabel A, Nagai H, Ladher RK, Sheng G.  2015.  Zebra finch as a developmental model.. Genesis. 53(11):669-77.
Mak S-S, Alev C, Nagai H, Wrabel A, Matsuoka Y, Honda A, Sheng G, Ladher RK.  2015.  Characterization of the finch embryo supports evolutionary conservation of the naive stage of development in amniotes.. Elife. 4:e07178.
Majumdar S, Bammidi LSowjanya, Naik HC, Manhas A, Baro R, Kalita A, Naskar AJyoti, Nidharshan S, Bariha GS, Notani D et al..  2025.  upstream deletion leads to dysregulation of and autosomal gene expression.. Genome Res.
Majila K, Golatkar O, Viswanath S.  2026.  Integrative modeling with AlphaFold.. Curr Opin Struct Biol. 98:103239.
Majila K, Arvindekar S, Jindal M, Viswanath S.  2025.  Frontiers in integrative structural modeling of macromolecular assemblies. QRB Discovery. 6:e3.
Majila K, Ullanat V, Viswanath S.  2026.  Disobind: A sequence-based, partner-dependent contact map and interface residue predictor for intrinsically disordered regions.. Cell Syst. 17(1):101486.
Majila K, Golatkar O, Viswanath S.  2026.  Integrative modeling with AlphaFold. Current Opinion in Structural Biology. 98:103239.
Maihoff F, Bohlke K, Brockmann A, Schmitt T.  2022.  Increased complexity of worker CHC profiles in Apis dorsata correlates with nesting ecology.. PLoS One. 17(7):e0271745.
Mahita J, Sowdhamini R.  2018.  Probing subtle conformational changes induced by phosphorylation and point mutations in the TIR domains of TLR2 and TLR3.. Proteins.
Mahita J, Sowdhamini R.  2017.  Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state.. Biol Direct. 12(1):9.
Mahita J, Harini K, Pichika MRao, Sowdhamini R.  2016.  An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.. J Biomol Struct Dyn. 34(6):1345-62.
Mahita J, Sowdhamini R.  2018.  Investigating the effect of key mutations on the conformational dynamics of Toll-like receptor dimers through molecular dynamics simulations and protein structure networks.. Proteins.
Mahajan S, Agashe D.  2018.  Translational selection for speed is not sufficient to explain variation in bacterial codon usage bias.. Genome Biol Evol.
Mahajan S, Agashe D.  2022.  Evolutionary jumps in bacterial GC content.. G3 (Bethesda).
Mahadevan C, K Shafi M, Nagarathnam B, Sakuntala M, Sowdhamini R.  2024.  Transcriptional regulation of hormone signalling genes in black pepper in response to Phytophthora capsici.. BMC Genomics. 25(1):910.
Magotra S, Bhagat N, Ambardar S, Ali T, Hurek BReinhold, Hurek T, Verma PKumar, Vakhlu J.  2021.  Field evaluation of PGP Bacillus sp. strain D5 native to Crocus sativus, in traditional and non traditional areas, and mining of PGP genes from its genome.. Sci Rep. 11(1):5454.
Maes S.L, Perring M.P, Cohen R., Akinnifesi F.K, Bargues-Tobella A., Bastin J.-f., Bauters M., Bernardino P.N, Brancalion P.HS, Bullock J.M et al..  2024.  Explore before you restore: Incorporating complex systems thinking in ecosystem restoration. JOURNAL OF APPLIED ECOLOGY .
Madhusudan M.D, Vanak ATamim.  2022.  Mapping the distribution and extent of India's semi-arid open natural ecosystems. JOURNAL OF BIOGEOGRAPHY.
Madhu A, Gandhivel VHari-Sunda, Raju S, Dey R, Shivaprasad PV.  2026.  Histone variant H2A.X represses deposition of active H3K4me3 marks and restricts H2A.W incorporation. Nucleic Acids Research. 54:gkag476.
Maddison WP, Beattie I, Marathe K, Ng PYC, Kanesharatnam N, Benjamin SP, Kunte K.  2020.  A phylogenetic and taxonomic review of baviine jumping spiders (Araneae, Salticidae, Baviini).. Zookeys. 1004:27-97.
Madan JS, Gupta K, Chattarji S, Bhattacharya A.  2018.  Hippocampal and amygdalar cell-specific translation is similar soon after stress but diverge over time.. Hippocampus.
Macdonald DW, Chiaverini L, Bothwell HM, Kaszta Ż, Ash E, Bolongon G, Can ÖEmre, Campos-Arceiz A, Channa P, Clements GReuben et al..  2020.  Predicting biodiversity richness in rapidly changing landscapes: climate, low human pressure or protection as salvation?
MacDonald E, Forrester A, Valades-Cruz CA, Madsen TD, Hetmanski JHR, Dransart E, Ng Y, Godbole R, Shp AAkhil, Leconte L et al..  2025.  Growth factor-triggered de-sialylation controls glycolipid-lectin-driven endocytosis.. Nat Cell Biol.
Ma Z, Liu X, Nath S, Sun H, Tran TMinh, Yang L, Mayor S, Miao Y.  2021.  Formin nanoclustering-mediated actin assembly during plant flagellin and DSF signaling.. Cell Rep. 34(13):108884.
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Lupton C, Sengupta M, Cheng R-K, Chia J, Thirumalai V, Jesuthasan S.  2017.  Loss of the Habenula Intrinsic Neuromodulator Kisspeptin1 Affects Learning in Larval Zebrafish.. eNeuro. 4(3)
Lu H, Twan WKyaw, Ikawa Y, Khare V, Mukherjee I, Schou KBødtker, Chua KXin, Aqasha A, Chakrabarti S, Hamada H et al..  2024.  Localisation and function of key axonemal microtubule inner proteins and dynein docking complex members reveal extensive diversity among vertebrate motile cilia.. Development. 151(14)
Louis LK, Gopurappilly R, Surendran H, Dutta S, Pal R.  2018.  Transcriptional profiling of human neural precursors post alcohol exposure reveals impaired neurogenesis via dysregulation of ERK signaling and miR-145.. J Neurochem. 146(1):47-62.
Liu G, Patch A, Bahar F, Yllanes D, Welch RD, M Marchetti C, Thutupalli S, Shaevitz JW.  2019.  Self-Driven Phase Transitions Drive Myxococcus xanthus Fruiting Body Formation.. Phys Rev Lett. 122(24):248102.
Liu P, Sane SP, Mongeau J-M, Zhao J, Cheng B.  2019.  Flies land upside down on a ceiling using rapid visually mediated rotational maneuvers.. Sci Adv. 5(10):eaax1877.
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y et al..  2024.  An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome.. Proc Natl Acad Sci U S A. 121(33):e2318601121.
Lissovsky AA, McDonough M, Dahal N, Jin W, Liu S, Ruedas LA.  2017.  A new subspecies of large-eared pika, Ochotona macrotis (Lagomorpha: Ochotonidae), from the Eastern Himalaya. Russian J. Theriol. 16(1):30–42.
Lingamallu SManoz, Deshpande A, Joy N, Ganeshan K, Ray N, Ladher RKumar, Taketo MMark, Lafkas D, Guha A.  2024.  Neuroepithelial bodies and terminal bronchioles are niches for distinctive club cells that repair the airways following acute notch inhibition.. Cell Rep. 43(9):114654.
Lichtenstein L, Brockmann A, Spaethe J.  2019.  Learning of monochromatic stimuli in Apis cerana and Apis mellifera by means of PER conditioning.. J Insect Physiol. 114:30-34.
Leong JV, Matos-Maraví P, Núñez R, Nunes R, Liang W, Kunte K.  2025.  Around the World in 26 Million Years: Diversification and Biogeography of Pantropical Grass-Yellow Eurema Butterflies (Pieridae: Coliadinae). Journal of Biogeography.
Lee I-H, Saha S, Polley A, Huang H, Mayor S, Rao M, Groves JT.  2015.  Live cell plasma membranes do not exhibit a miscibility phase transition over a wide range of temperatures.. J Phys Chem B. 119(12):4450-9.
Leblanc K, Quéguiner B, Diaz F, Cornet V, Michel-Rodriguez M, de Madron XDurrieu, Bowler C, Malviya S, Thyssen M, Grégori G et al..  2018.  Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export.. Nat Commun. 9(1):953.
Laurance WF, Ramakrishnan U.  2025.  Tiger turnaround as populations grow in India.. Nature. 640(8059):603-604.
Lannes L, Halder S, Krishnan Y, Schwalbe H.  2015.  Tuning the pH Response of i-Motif DNA Oligonucleotides.. Chembiochem. 16(11):1647-56.
Landschaft-Berliner D, Goldstein K, Teichman G, Anava S, Gingold H, Salzberg Y, Rieger I, Levy N, Pechuk V, Setty H et al..  2025.  Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.. Nat Neurosci.
Lamba S, Ganesan S, Daroch N, Paul K, Joshi SGopal, Sreenivas D, Nataraj A, Srikantaiah V, Mishra R, Ramakrishnan U et al..  2023.  SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater - a longitudinal study in Bengaluru, India.. Lancet Reg Health Southeast Asia. :100151.
Lalwani DP, Gosavi S.  2021.  Understanding the Folding Mediated Assembly of the Bacteriophage MS2 Coat Protein Dimers.. J Phys Chem B.
Lall S, Balaram P, Mathew MK, Gosavi S.  2025.  Sequence of the SARS-CoV-2 Spike Transmembrane Domain Encodes Conformational Dynamics.. J Phys Chem B. 129(1):194-209.
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.  2016.  Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Lal A, Krishna S, Seshasayee ASai Narain.  2018.  Regulation of Global Transcription in by Rsd and 6S RNA.. G3 (Bethesda).
Lakshminarayanan N., Karanth K.K., Goswami V.R., Vaidyanathan S., Karanth U.  2016.  Determiants of dry season habitat use by Asian elephants in the Western Ghats of India. Journal of Zoological. 298(3):169–177.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.  2016.  Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Lakshmanan V, N ST, Bansal D, Padubidri SV, Palakodeti D, Krishna S.  2021.  Comprehensive annotation and characterization of planarian tRNA and tRNA-derived fragments (tRFs).. RNA.
Lajmi A, Giri VB, K. Karanth P.  2016.  Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). ORGANISMS DIVERSITY & EVOLUTION. 16(3):659-677.
Lajmi A, Datta-Roy A, Vyas R, Agarwal I, Karanth P.  2018.  The curious case of Hemidactylus gujaratensis (Squamata: Gekkonidae).. Zootaxa. 4388(1):137-142.
Lajmi A, Bansal R, Giri VB, Karanth P.  2019.   Phylogeny and biogeography of the endemic Hemidactylus geckos of the Indian subregion suggest multiple dispersals from Peninsular India to Sri Lanka. Zoological Journal of the Linnean Society. 186(186):286–301.
Lahree A, Baptista Sde Jesus S, Marques S, Perschin V, Zuzarte-Luís V, Goel M, Choudhary HHasan, Mishra S, Stigloher C, Zerial M et al..  2022.  Active APPL1 sequestration by Plasmodium favors liver-stage development.. Cell Rep. 39(9):110886.
Ladher RK.  2017.  Changing shape and shaping change: Inducing the inner ear.. Semin Cell Dev Biol. 65:39-46.
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Kuwalekar M, Deshmukh R, Padvi A, Kunte K.  2020.  Molecular Evolution and Developmental Expression of Melanin Pathway Genes in Lepidoptera. FRONTIERS IN ECOLOGY AND EVOLUTION. 8
Kute PMadhav, Ramakrishna S, Neelagandan N, Chattarji S, Muddashetty RS.  2019.  NMDAR mediated translation at the synapse is regulated by MOV10 and FMRP.. Mol Brain. 12(1):65.
Kurzthaler C, Mandal S, Bhattacharjee T, Löwen H, Datta SS, Stone HA.  2021.  A geometric criterion for the optimal spreading of active polymers in porous media.. Nat Commun. 12(1):7088.
Kunte K, Roy P, Kalesh S., Kodandaramaia U.  2015.  Butterflies of India. Indian Foundation for Butterflies. 2(10)
Kunte K, Ghate U, Subramanian K..  2026.  Madhav Gadgil (1942–2026): A pioneering Indian ecologist’s legacy of biodiversity conservation and human coexistence. Proceedings of the National Academy of Sciences. 123
Kunte K, Kizhakke AGirish, Nawge V, Futuyma DJ.  2021.  Evolution of Mimicry Rings as a Window into Community Dynamics. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS . 52:315-341.
Kunte K, Sengupta A, Pawar U, Nawge V.  2024.  A new species of silverline butterfly, Cigaritis Donzel, 1847 (Lepidoptera: Lycaenidae), from the Western Ghats biodiversity hotspot, India.. Zootaxa. 5399(1):85-95.
Kunte K, Basu DNath.  2024.  Two new taxa of brush-footed butterflies (Lepidoptera: Nymphalidae) from the Western Ghats biodiversity hotspot, southern India.. Zootaxa. 5543(3):343-367.
Kunte K.  2015.  A new species of Hypolycaena (Lepidoptera: Lycenidae) from Arunachal Pradesh, north-eastern India. The Journal of Research on the Lepidoptera. 48:21-27.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Kunte K, Khan F, Pawar U.  2026.  A new species of Chonala Moore, 1893 (Lepidoptera: Nymphalidae) from northeastern India. Zootaxa. 5828:575–586.
Kundu S, Ganguly A, Chakraborty TSubhra, Kumar A, Siddiqi O.  2016.  Synergism and Combinatorial Coding for Binary Odor Mixture Perception in Drosophila.. eNeuro. 3(4)
Kumari A, Kesarwani S, Javoor MG, Vinothkumar KR, Sirajuddin M.  2020.  Structural insights into actin filament recognition by commonly used cellular actin markers. EMBO J. 39(14)
Kumari J, Uthaman A, Bose S, Kundu A, Sharma V, Dutta S, Dhar A, Roy S, Srinivasan R, Pande S et al..  2025.  Distinct filament morphology and membrane tethering features of the dual FtsZ paralogs in Odinarchaeota.. EMBO J.
Kumari N, Bandyopadhyay D, Kumar V, Venkatesh DB, Prasad S, Prakash S, Krishnaswamy PR, Balaram P, Bhat N.  2021.  Glycation of Albumin and its Implication in Diabetes: A Comprehensive Analysis using Mass Spectrometry.. Clin Chim Acta.
Kumari A, Ghosh A, Kolay S, Raghu P.  2022.  Septins tune lipid kinase activity and PI(4,5)P turnover during G-protein-coupled PLC signalling in vivo.. Life Sci Alliance. 5(6)
Kumar M, Sane S, Murali A, Thutupalli S.  2025.  Temperature switchable self-propulsion activity of liquid crystalline microdroplets.. Soft Matter.
Kumar M, Singh A, Del Secco B, Baranov MV, van den Bogaart G, Sacanna S, Thutupalli S.  2022.  Assembling anisotropic colloids using curvature-mediated lipid sorting.. Soft Matter.
Kumar H, Singh J, Kumari P, Udgaonkar JB.  2017.  Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
R Kumar V, Shivaprasad PV.  2020.  Plant-virus-insect tritrophic interactions: insights into the functions of geminivirus virion-sense strand genes.. Proc Biol Sci. 287(1936):20201846.
Kumar S, Vijayasarathy M, Venkatesha MA, Sunita P, Balaram P.  2020.  Cone snail analogs of the pituitary hormones oxytocin/vasopressin and their carrier protein neurophysin. Proteomic and transcriptomic identification of conopressins and conophysins.. Biochim Biophys Acta Proteins Proteom. :140391.
Kumar M, Sharma S, Sil P, Kushwaha M, Mayor S, Vishwakarma RA, Singh PP.  2019.  C–H Arylation of N‐Heteroarenes under Metal‐Free Conditions and its Application towards the Synthesis of Pentabromo‐ and Pentachloropseudilins. EUROPEAN JOURNAL OF ORGANIC CHEMISTRY. 2019(22):3591-3598.
Kumar S, Ghosh S, Shanavas N, Sivaramakrishnan V, Dwari M, Das S.  2024.  Development of pial collaterals by extension of pre-existing artery tips.. Cell Rep. 43(10):114771.
Kumar S, Mahajan S, Jain S.  2018.  Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis.. PLoS One. 13(10):e0203311.
Kumar H, Udgaonkar JB.  2022.  Elongation of Fibrils Formed by a Tau Fragment is Inhibited by a Transient Dimeric Intermediate.. J Phys Chem B.
Kumar S, M Venkatesha A, Balaram P.  2022.  Mechanistic Investigations on N-C Bond Cleavages in Dibasic Peptides Containing Internal Lys and Arg Residues.. J Am Soc Mass Spectrom.
Kumar M, R Kumar V, Chakraborty S.  2020.  Association of a begomovirus-satellite complex with yellow vein and leaf curl disease of hollyhock (Alcea rosea) in India.. Arch Virol.
G Kumar A, Sarkar P, Jafurulla M, Singh SPal, Srinivas G, Pande G, Chattopadhyay A.  2019.  Exploring Endocytosis and Intracellular Trafficking of the Human Serotonin Receptor.. Biochemistry.
Kumar R, Dhaka B, Sahoo S, Jolly MKumar, Sabarinathan R.  2023.  Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment.. Mol Oncol.
Kumar H, Udgaonkar JB.  2018.  Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Kumar S, M Venkatesha A, Lall S, Prakash S, Balaram P.  2020.  Mechanistic Insights into an Unusual Side-Chain-Mediated N-C Bond Cleavage under Collision-Induced Dissociation Conditions in the Disulfide-Containing Peptide Conopressin.. J Am Soc Mass Spectrom. 31(5):1083-1092.
G Kumar A, Sarkar P, Stepniewski TMaciej, Jafurulla M, Singh SPal, Selent J, Chattopadhyay A.  2021.  A molecular sensor for cholesterol in the human serotonin receptor.. Sci Adv. 7(30)
Kumar VRavi, Buddh S, Singhal S, Prakash A, Agashe D.  2025.  Founders predict trait evolution and population performance after evolutionary rescue in the red flour beetle.. Proc Natl Acad Sci U S A. 122(36):e2506244122.
Kumar VRavi, Agavekar G, Agashe D.  2023.  Fitness landscapes reveal context-dependent benefits of oviposition behavior.. Evolution. 77(2):550-561.
Kumar M, Murali A, Subramaniam AGopal, Singh R, Thutupalli S.  2024.  Emergent dynamics due to chemo-hydrodynamic self-interactions in active polymers.. Nat Commun. 15(1):4903.
R Kumar V.  2019.  Plant Antiviral Immunity Against Geminiviruses and Viral Counter-Defense for Survival.. Front Microbiol. 10:1460.
Kumar A, Shahul AK, Bhalla USingh.  2025.  Mechanisms and implications of high depolarization baseline offsets in conductance-based neuronal models.. J Neurophysiol.
Kumar R, Shahabuddin G, Kumar A.  2020.  Foraging niche differentiation among sympatric woodpecker species in forests of north-western India. ACTA ORNITHOLOGICA. 55(1):88-100.
Kumar H, Udgaonkar JB.  2019.  Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Kumar H, Udgaonkar JB.  2021.  The Lys 280 ➔ Gln mutation mimicking disease-linked acetylation of Lys 280 in tau extends the structural core of fibrils and modulates their catalytic properties.. Protein Sci.
Kulkarni SS, Sabharwal V., Sheoran S., Basu A., Matsumoto K., Hisamoto N., Ghosh-Roy A., Koushika SP.  2021.  UNC-16 alters DLK-1 localization and negatively regulates actin and microtubule dynamics in Caenorhabditis elegans regenerating neurons. Genetics. 219(3):iyab139.

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