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Kamat A, Tran NT, Sharda M, Sontakke N, Le TBK, Badrinarayanan A.  2024.  Widespread prevalence of a methylation-dependent switch to activate an essential DNA damage response in bacteria.. PLoS Biol. 22(3):e3002540.
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Joseph AMary, Badrinarayanan A.  2020.  Visualizing mutagenic repair: novel insights into bacterial translesion synthesis.. FEMS Microbiol Rev.
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Raghunathan S, Badrinarayanan A.  2019.  Tracking Bacterial Chromosome Dynamics with Microfluidics-Based Live Cell Imaging.. Methods Mol Biol. 2004:223-238.
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Kamat A, Badrinarayanan A.  2023.  SOS-independent bacterial DNA damage responses: diverse mechanisms, unifying function.. Curr Opin Microbiol. 73:102323.
Chimthanawala A, Parmar JJ, Kumar S, Iyer KS, Rao M, Badrinarayanan A.  2022.  SMC protein RecN drives RecA filament translocation for in vivo homology search.. Proc Natl Acad Sci U S A. 119(46):e2209304119.
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Joseph AMary, Nahar K, Daw S, Hasan MMahbub, Lo R, Le TBK, Rahman KMiraz, Badrinarayanan A.  2022.  Mechanistic insight into the repair of C8-linked pyrrolobenzodiazepine monomer-mediated DNA damage.. RSC Med Chem. 13(12):1621-1633.
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Chimthanawala A, Badrinarayanan A.  2019.  Live-Cell Fluorescence Imaging of RecN in Caulobacter crescentus Under DNA Damage.. Methods Mol Biol. 2004:239-250.
Adhikashreni IS, Joseph AMary, Phadke S, Badrinarayanan A.  2025.  Live tracking of replisomes reveals nutrient-dependent regulation of replication elongation rates in Caulobacter crescentus.. Curr Biol. 35(8):1816-1827.e3.
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Dua N, Badrinarayanan A.  2024.  Heteroplasmy in action: tracking mtDNA segregation dynamics.. EMBO J.
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Badrinarayanan A, Le TBK, Spille J-H, Cisse II, Laub MT.  2017.  Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB.. PLoS Genet. 13(5):e1006783.
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Badrinarayanan A, Leake MC.  2022.  Fluorescence Recovery After Photobleaching (FRAP) to Study Dynamics of the Structural Maintenance of Chromosome (SMC) Complex in Live Escherichia coli Bacteria.. Methods Mol Biol. 2476:31-41.
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Sharda M, Badrinarayanan A, Seshasayee ASai Narain.  2020.  Evolutionary and Comparative analysis of bacterial Non-Homologous End Joining Repair.. Genome Biol Evol.
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Dua N, Seshadri A, Badrinarayanan A.  2022.  DarT-mediated mtDNA damage induces dynamic reorganization and selective segregation of mitochondria.. J Cell Biol. 221(10)
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Jalal ASB, Tran NT, Stevenson CEM, Chimthanawala A, Badrinarayanan A, Lawson DM, Le TBK.  2021.  A CTP-dependent gating mechanism enables ParB spreading on DNA. Elife. 10(e69676)
Joseph AM, Daw S, Sadhir I, Badrinarayanan A.  2021.  Coordination between nucleotide excision repair and specialized polymerase DnaE2 action enables DNA damage survival in non-replicating bacteria. Elife.
Zhang C, Joseph AMary, Casini L, Collier J, Badrinarayanan A, Manley S.  2024.  Chromosome organization shapes replisome dynamics in Caulobacter crescentus.. Nat Commun. 15(1):3460.
A
Raghunathan S, Chimthanawala A, Krishna S, Vecchiarelli AG, Badrinarayanan A.  2020.  Asymmetric chromosome segregation and cell division in DNA damage-induced bacterial filaments.. Mol Biol Cell. 31(26):2920-2931.