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2021
Sreeraj VS, Puzhakkal JC, Holla B, Nadella RKumar, Sheth S, Balachander S, Ithal D, Ali F, Viswanath B, Muralidharan K et al..  2021.  Cross-diagnostic evaluation of minor physical anomalies in psychiatric disorders.. J Psychiatr Res. 142:54-62.
Huelsmeier J, Walker E, Bakthavachalu B, Ramaswami M.  2021.  A C-terminal ataxin-2 disordered region promotes Huntingtin protein aggregation and neurodegeneration in Drosophila models of Huntington's disease.. G3 (Bethesda).
Jalal ASB, Tran NT, Stevenson CEM, Chimthanawala A, Badrinarayanan A, Lawson DM, Le TBK.  2021.  A CTP-dependent gating mechanism enables ParB spreading on DNA. Elife. 10(e69676)
Konieczny P, Mukherjee S, Stepniak-Konieczna E, Taylor K, Niewiadomska D, Piasecka A, Walczak A, Baud A, Dohno C, Nakatani K et al..  2021.  Cyclic mismatch binding ligands interact with disease-associated CGG trinucleotide repeats in RNA and suppress their translation.. Nucleic Acids Res.
2022
Garcia-Font N, Mitchell-Heggs R, Saxena K, Gabbert C, Taylor G, Mastroberadino G, Spooner PA, Gobbo F, Dabrowska JK, Chattarji S et al..  2022.  Ca2+ imaging of self and other in medial prefrontal cortex during social dominance interactions in a tube test.. Proc Natl Acad Sci U S A. 119(31):e2107942119.
Bagchi B, Seal S, Raina M, Basu DNath, Khan I.  2022.  Carcass Scavenging Relaxes Chemical-Driven Female Interference Competition in Flour Beetles. AMERICAN NATURALIST.
Agashe D, Maheshwary S, Pattanaik JKumar, Prakash J, Bhatt P, Arya S.S, Chatterjee S, Kumar P, Singh P, Abbas N et al..  2022.  Career challenges for young independent researchers in India. CURRENT SCIENCE. 122(2):135-143.
Srivathsa A, Banerjee A, Banerjee S, Chawla MMathew, Das A, Ganguly D, Rodrigues RG, Adhya T, Bhatia S, Kshettry A et al..  2022.  Chasms in charismatic species research: Seventy years of carnivore science and its implications for conservation and policy in India. BIOLOGICAL CONSERVATION . 273(109694)
Anujan K, Ratnam J, Sankaran M.  2022.  Chronic browsing by an introduced mammalian herbivore in a tropical island alters species composition and functional traits of forest understory plant communities. BIOTROPICA .
Eriksson O, Bhalla USingh, Blackwell KT, Crook SM, Keller D, Kramer A, Linne M-L, Saudargienė A, Wade RC, Kotaleski JHellgren.  2022.  Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows.. Elife. 11
Morin DJ, Boulanger J, Bischof R, Lee DC, Ngoprasert D, Fuller AK, McLellan B, Steinmetz R, Sharma S, Garshelis D et al..  2022.  Comparison of methods for estimating density and population trends for low-density Asian bears. GLOBAL ECOLOGY AND CONSERVATION. 35(e02058)
K Shafi M, Sowdhamini R.  2022.  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.. BMC Genomics. 23(1):516.
Bheemireddy S, Sandhya S, Srinivasan N, Sowdhamini R.  2022.  Computational tools to study RNA-protein complexes.. Front Mol Biosci. 9:954926.
Coetsee C., Wigley B.J, Sankaran M., Ratnam J., Augustine D.J.  2022.  Contrasting Effects of Grazing vs Browsing Herbivores Determine Changes in Soil Fertility in an East African Savanna. ECOSYSTEMS .
Prakash A, Agashe D, Khan I.  2022.  The costs and benefits of basal infection resistance vs immune priming responses in an insect.. Dev Comp Immunol. 126:104261.
Tirumalai V, Narjala A, Swetha C, G Vivek Hari Sundar, Sujith TN, Shivaprasad PV.  2022.  Cultivar-specific miRNA-mediated RNA silencing in grapes.. Planta. 256(1):17.
Sahasrabuddhe V, Ghosh HS.  2022.  Cx3Cr1-Cre induction leads to microglial activation and IFN-1 signaling caused by DNA damage in early postnatal brain.. Cell Rep. 38(3):110252.
2023
Patel FDivan, Pinto W, Dey M, Alcoverro T, Arthur R.  2023.  Carbonate budgets in Lakshadweep Archipelago bear the signature of local impacts and global climate disturbances. CORAL REEFS .
Iyer KS, Prabhakara C, Mayor S, Rao M.  2023.  Cellular compartmentalisation and receptor promiscuity as a strategy for accurate and robust inference of position during morphogenesis. . Elife. :12:e79257.
S IMeenakshi, Rao M, Mayor S, Sowdhamini R.  2023.  A census of actin-associated proteins in humans.. Front Cell Dev Biol. 11:1168050.
Khouzam RAbou, Sharda M, Rao SPrasad, Kyerewah-Kersi SMaame, Zeinelabdin NAhmed, Mahmood AShah, Nawafleh H, Khan MSamar, Venkatesh GHassan, Chouaib S.  2023.  Chronic hypoxia is associated with transcriptomic reprogramming and increased genomic instability in cancer cells.. Front Cell Dev Biol. 11:1095419.
Singh AKumar, Walavalkar K, Tavernari D, Ciriello G, Notani D, Sabarinathan R.  2023.  Cis-regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers.. Mol Oncol.
Tyagi A, Godbole M, Vanak ATamim, Ramakrishnan U.  2023.  Citizen science facilitates first ever genetic detection of wolf-dog hybridization in Indian savannahs.. Ecol Evol. 13(5):e10100.
Singha T, Polley A, Barma M.  2023.  Clustering of lipids driven by integrin.. Soft Matter. 19(35):6814-6824.
Attiwilli S, Ravikanthachari N, Kunte K.  2023.  A comparison between time-constrained counts and line transects as methods to estimate butterfly diversity and monitor populations in tropical habitats. INSECT CONSERVATION AND DIVERSITY.
Bakker JD, Price JN, Henning JA, , Sankaran M, et al.  2023.  Compositional variation in grassland plant communities. ECOSPHERE . 14(6):e4542.
Condamine FL, Allio R, Reboud EL, Dupuis JR, Toussaint EFA, Mazet N, Hu S-J, Lewis DS, Kunte K, Cotton AM et al..  2023.  A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae).. Mol Phylogenet Evol. 183:107758.
Chauhan PKumar, Sowdhamini R.  2023.  Computational analysis of the flexibility in the disordered linker region connecting LIM domains in cysteine-glycine-rich protein.. Front Genet. 14:1134509.
Asopa A, Bhalla US.  2023.  A computational view of short-term plasticity and its implications for E-I balance.. Curr Opin Neurobiol. 81:102729.
Jaganathan D, Rajakani R, Doddamani D, Saravanan D, Pulipati S, Vivek Hari Sundar G, Sellamuthu G, Jayabalan S, Kumari K, Parthasarathy P et al..  2023.  A conserved SNP variation in the pre-miR396c flanking region in Oryza sativa indica landraces correlates with mature miRNA abundance.. Sci Rep. 13(1):2195.
Vijayasarathy M, Kumar S, Venkatesha MA, Balaram P.  2023.  Contryphan sequence diversity: Messy N-terminus processing, effects on chromatographic behaviour and mass spectrometric fragmentation.. J Proteomics. :104805.
Das M, Sreedharan S, Shee S, Malhotra N, Nandy M, Banerjee U, Kohli S, Rajmani RS, Chandra N, Seshasayee ASai Narain et al..  2023.  Cysteine desulfurase (IscS)-mediated fine-tuning of bioenergetics and SUF expression prevents hypervirulence.. Sci Adv. 9(50):eadh2858.
Vijayasarathy M, Kumar S, Das R, Balaram P.  2023.  Cysteine-free cone snail venom peptides: Classification of precursor proteins and identification of mature peptides.. J Pept Sci. :e3554.
2024
Collins DM, Janardan V, Barneda D, Anderson KE, Niewczas I, Taylor D, Qiu D, Jessen HJ, Lopez-Clavijo AF, Walker S et al..  2024.  CDS2 expression regulates de novo phosphatidic acid synthesis.. Biochem J. 481(20):1449-1473.
Sreepadmanabh M, Ganesh M, Sanjenbam P, Kurzthaler C, Agashe D, Bhattacharjee T.  2024.  Cell shape affects bacterial colony growth under physical confinement.. Nat Commun. 15(1):9561.
Raghu P, Sharma Y, Devi ABhuvanendr, Krishnan H.  2024.  Challenges and opportunities for discovering the biology of rare genetic diseases of the brain.. J Biosci. 49
Zhang C, Joseph AMary, Casini L, Collier J, Badrinarayanan A, Manley S.  2024.  Chromosome organization shapes replisome dynamics in Caulobacter crescentus.. Nat Commun. 15(1):3460.
Joshi A, Ratnam J, Paramjyothi H, Sankaran M.  2024.  Climate and vegetation collectively drive soil respiration in montane forest-grassland landscapes of the southern Western Ghats, India. Journal of Tropical Ecology. 40
Carvalho APaula S, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT et al..  2024.  Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature.. iScience. 27(4):109336.
Nayak S, Regati DReddy, Sowdhamini R.  2024.  Computational analysis of human gut microbial prolyl oligopeptidases (POPs) reveal candidate genes as therapeutics for celiac disease.. Sci Rep. 14(1):19641.
Sharma A, Chandrashekar CR, Krishna S, Sowdhamini R.  2024.  Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2.. J Mol Biol. 436(19):168716.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Adamala KP, Agashe D, Belkaid Y, Bittencourt DMatias de, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM et al..  2024.  Confronting risks of mirror life.. Science. 386(6728):1351-1353.
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Thutupalli S.  2024.  The cost of cellular patterns. Nature Physics. 20:1704–1705.
Hussain N, Apotikar A, Pidathala S, Mukherjee S, Burada AP, Sikdar SK, Vinothkumar KR, Penmatsa A.  2024.  Cryo-EM structures of pannexin 1 and 3 reveal differences among pannexin isoforms.. Nat Commun. 15:2942.
Narah J, Streinzer M, Chakravorty J, Megu K, Spaethe J, Brockmann A, Schmitt T.  2024.  Cuticular Hydrocarbon Profiles of Himalayan Bumble Bees (Hymenoptera: Bombus Latreille) are Species-Specific and Show Elevational Variation.. J Chem Ecol.
2025
Nath VR, Krishnan H, Mishra S, Raghu P.  2025.  Ca2+ binding to Esyt modulates membrane contact site density in Drosophila photoreceptors.. J Cell Biol. 224(5)
Agarwal P.  2025.  Caenorhabditis elegans germline flux pulls its stem-cell niche cells into shape.. J Biosci. 50
SAWANT DATTAPRASAD, JOSHI SHANTANU, PAWAR UJWALA, NAWGE VIRAJ, Kunte K.  2025.  Caliphaea sinuofurcata sp. nov. (Odonata: Zygoptera: Calopterygidae) from Arunachal Pradesh, India. Zootaxa. 5637:139-154.
Sundaramurthy V, Strauss E.  2025.  Combating Tuberculosis: Obstacles, Innovations, and the Road Ahead.. ACS Infect Dis. 11(7):1754-1755.
Nikhat A, Shaikh A, Chakrabarti S.  2025.  Combining lineage correlations and a small molecule inhibitor to detect circadian control of the cell cycle. Cell Press. 28(4)
Nikhat A, Shaikh A, Chakrabarti S.  2025.  Combining lineage correlations and a small molecule inhibitor to detect circadian control of the cell cycle.. iScience. 28(4):112269.
Sidhanta SPrakash Da, Sowdhamini R, Srinivasan N.  2025.  Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins.. Proteins. 93(1):197-208.
Bheemireddy S, Sowdhamini R, Srinivasan N.  2025.  Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly.. PLoS One. 20(1):e0317187.
Kanojia A, Bhaduri A, Nayak S, Sowdhamini R, Mudgil Y.  2025.  Computational exploration of Arabidopsis thaliana N-Myc downregulated-like-1 for protein–protein interaction and phylogenetic conservation.
Cannone G, Berto L, Malhaire F, Ferguson G, Fouillen A, Balor S, Font-Ingles J, Llebaria A, Goudet C, Kotecha A et al..  2025.  Conformational diversity in class C GPCR positive allosteric modulation.. Nat Commun. 16(1):619.
H K, S M, S S, V R, A G, R S, R P.  2025.  Conserved biochemical activity and function of phosphatidylinositol 5 phosphate 4 kinase regulates growth & development .
Mukardamwala MS, Trivedi PG, Mehta D, Viswanathan A.  2025.  Correlates of Tree Cavity Presence in a Tropical Deciduous Forest of the Northern Western Ghats, India.
Raina R., D K, M S, S T, S K, S A, V K, S B, S G, RK P et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..

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