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2025
Sidhanta SPrakash Da, Sowdhamini R, Srinivasan N.  2025.  Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins.. Proteins. 93(1):197-208.
Cannone G, Berto L, Malhaire F, Ferguson G, Fouillen A, Balor S, Font-Ingles J, Llebaria A, Goudet C, Kotecha A et al..  2025.  Conformational diversity in class C GPCR positive allosteric modulation.. Nat Commun. 16(1):619.
Umar I, Gulzar S-E-J, Sundaramurthy V.  2025.  M. tuberculosis surface sulfoglycolipid SL-1 activates the mechanosensitive channel TRPV4 to enhance lysosomal biogenesis and exocytosis in macrophages. Mol Biol Cell. 36(6):ar76.
Soler JAntoni, Singh A, Zerial M, Thutupalli S.  2025.  Motor Function of the Two-Component EEA1-Rab5 Revealed by dcFCCS.. Methods Mol Biol. 2881:87-115.
Krishnamoorthy VK, Hamdani F, Shukla P, Rao RArasala, Anaitullah S, Biligiri KKestur, Kadumuri RVarma, Pothula PReddy, Chavali S, Rampalli S.  2025.  NSD3 protein methylation and stabilization transforms human ES cells into variant state.. Life Sci Alliance. 8(3)
Zaidel-Bar R, Agarwal P.  2025.  Outside influences: The impact of extracellular matrix mechanics on cell migration.. Curr Top Dev Biol. 164:29-65.
2024
Vaishnav MS, Kumari N, Srikanta S, Simha V, Krishnaswamy PR, Balaram P, Bhat N.  2024.  Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications.. Metab Syndr Relat Disord. 22(5):372-384.
Viswanath S.  2024.  AlphaFold opens the doors to deorphanizing secreted proteins.. Cell Syst. 15(11):1000-1001.
Cherian P, Kshirsagar J, Neekhra B, Deshkar G, Hayatnagarkar H, Kapoor K, Kaski C, Kathar G, Khandekar S, Mookherjee S et al..  2024.  BharatSim: An agent-based modelling framework for India.. PLoS Comput Biol. 20(12):e1012682.
Raghu P, Sharma Y, Devi ABhuvanendr, Krishnan H.  2024.  Challenges and opportunities for discovering the biology of rare genetic diseases of the brain.. J Biosci. 49
Nayak S, Regati DReddy, Sowdhamini R.  2024.  Computational analysis of human gut microbial prolyl oligopeptidases (POPs) reveal candidate genes as therapeutics for celiac disease.. Sci Rep. 14(1):19641.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y et al..  2024.  An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome.. Proc Natl Acad Sci U S A. 121(33):e2318601121.
Dewan A, Jain C, Das M, Tripathi A, Sharma AKumar, Singh H, Malhotra N, Seshasayee ASai Narain, Chakrapani H, Singh A.  2024.  Intracellular peroxynitrite perturbs redox balance, bioenergetics, and Fe-S cluster homeostasis in Mycobacterium tuberculosis.. Redox Biol. 75:103285.
Pasani S, Menon KS, Viswanath S.  2024.  The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling.. Protein Sci. 33(12):e5217.
Pramanik R, Nannaware K, Malik V, Shah P, Sangewar P, Gogate N, Shashidhara LS, Boargaonkar R, Patil D, Kale S et al..  2024.  Monitoring Influenza A (H1N1, H3N2), RSV, and SARS-CoV-2 Using Wastewater-Based Epidemiology: A 2-Year Longitudinal Study in an Indian Megacity Covering Omicron and Post-Omicron Phases.. Food Environ Virol. 17(1):3.
Gowda A, C ST, Anil VS, Raghavan S.  2024.  Phytosynthesis of silver nanoparticles using aqueous sandalwood (Santalum album L.) leaf extract: Divergent effects of SW-AgNPs on proliferating plant and cancer cells.. PLoS One. 19(4):e0300115.
Mukherjee AKishore, Dutta S, Singh A, Sharma S, Roy SShekhar, Sengupta A, Chatterjee M, Vinayagamurthy S, Bagri S, Khanna D et al..  2024.  Telomere length sensitive regulation of interleukin receptor 1 type 1 (IL1R1) by the shelterin protein TRF2 modulates immune signalling in the tumour microenvironment.. Elife. 13
Verma S, Sowdhamini R.  2024.  Toll-like receptor 4 pathway evolutionary trajectory and functional emergence.. Frontiers in Immunology. 15:1494017.
2023
Bhatt T, Dam B, Khedkar SUday, Lall S, Pandey S, Kataria S, Ajnabi J, Gulzar S-E-J, Dias PM, Waskar M et al..  2023.  Niacinamide enhances cathelicidin mediated SARS-CoV-2 membrane disruption.. Front Immunol. 14:1255478.
Shashidhara LS, Joshi A.  2023.  Not teaching evolution is an injustice.. Science. 380(6652):1303.
Pörtner H-O, Scholes RJ, Arneth A, Barnes DKA, Burrows MT, Diamond SE, Duarte CM, Kiessling W, Leadley P, Managi S et al..  2023.  Overcoming the coupled climate and biodiversity crises and their societal impacts.. Science. 380(6642):eabl4881.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
2022
Zaarour RFaouzi, Sharda M, Azakir B, Venkatesh GHassan, Khouzam RAbou, Rifath A, Nizami ZNausheen, Abdullah F, Mohammad F, Karaali H et al..  2022.  Genomic Analysis of Waterpipe Smoke-Induced Lung Tumor Autophagy and Plasticity.. Int J Mol Sci. 23(12)
Chauhan PKumar, Sowdhamini R.  2022.  Integrative network analysis interweaves the missing links in cardiomyopathy diseasome.. Sci Rep. 12(1):19670.
Thirumalai V, Jha U.  2022.  Recruitment of Motoneurons.. Vertebrate Motoneurons (Series: Advances in Neurobiology). 28:169-190.
Badarinath K, Dam B, Kataria S, Zirmire RK, Dey R, Kansagara G, Ajnabi J, Hegde A, Singh R, Masudi T et al..  2022.  Snail maintains the stem/progenitor state of skin epithelial cells and carcinomas through the autocrine effect of matricellular protein Mindin.. Cell Rep. 40(12):111390.
2020
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Srivathsa A, Sharma S, Oli MK.  2020.  Every dog has its prey: Range-wide assessment of links between diet patterns, livestock depredation and human interactions for an endangered carnivore.. Sci Total Environ. 714:136798.
2019
Krishnadas M, Kumar AN, Comita LS.  2019.  Edge effects reduce α-diversity but not β-diversity during community assembly in a human-modified tropical forest.. Ecol Appl. 29(8):e01996.
2018
Vijayakrishnan S, Kumar MAnanda, Umapathy G, Kumar V, Sinha A.  2018.  Physiological stress responses in wild Asian elephants Elephas maximus in a human-dominated landscape in the Western Ghats, southern India.. Gen Comp Endocrinol. 266:150-156.
2017
Sabareesan AThody, Udgaonkar JB.  2017.  The G126V Mutation in the Mouse Prion Protein Hinders Nucleation-Dependent Fibril Formation by Slowing Initial Fibril Growth and by Increasing the Critical Concentration.. Biochemistry. 56(44):5931-5942.
2015
Purkanti R, Thattai M.  2015.  Ancient dynamin segments capture early stages of host-mitochondrial integration.. Proc Natl Acad Sci U S A. 112(9):2800-5.
Johannes L, Parton RG, Bassereau P, Mayor S.  2015.  Building endocytic pits without clathrin.. Nat Rev Mol Cell Biol. 16(5):311-21.
Malhotra S, Mathew OK, Sowdhamini R.  2015.  DOCKSCORE: a webserver for ranking protein-protein docked poses.. BMC Bioinformatics. 16:127.
Weinert T, Olieric V, Waltersperger S, Panepucci E, Chen L, Zhang H, Zhou D, Rose J, Ebihara A, Kuramitsu S et al..  2015.  Fast native-SAD phasing for routine macromolecular structure determination.. Nat Methods. 12(2):131-3.
Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DSelvi, Mukundan N, Jambekar A, Thangaraj K et al..  2015.  Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies.. J Biol Chem. 290(11):7003-15.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Chattarji S, Tomar A, Suvrathan A, Ghosh S, Rahman MMostafizur.  2015.  Neighborhood matters: divergent patterns of stress-induced plasticity across the brain.. Nat Neurosci. 18(10):1364-75.
2007
Mayor S, Pagano RE.  2007.  Pathways of clathrin-independent endocytosis.. Nat Rev Mol Cell Biol. 8(8):603-12.