Author Title Type [ Year(Desc)]
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2025
Han X, Anthon C, Geissler ASven, Sabarinathan R, Seemann SErnst, Havgaard JHull, Gorodkin J.  2025.  Associating cancer-related RNA structure disrupting SNPs in LincRNAs to function.. BMC Genomics. 26(1):1100.
Anujan K, Shabnam A, Ali I, Gummadi AKumar, Sankaran M, Krishnadas M, Naeem S.  2025.  Biodiversity effects on seedling growth are modified by light environment across functional groups.. Ecol Appl. 35(5):e70087.
Landschaft-Berliner D, Goldstein K, Teichman G, Anava S, Gingold H, Salzberg Y, Rieger I, Levy N, Pechuk V, Setty H et al..  2025.  Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.. Nat Neurosci.
Landschaft-Berliner D, Goldstein K, Teichman G, Anava S, Gingold H, Salzberg Y, Rieger I, Levy N, Pechuk V, Setty H et al..  2025.  Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.. Nat Neurosci.
Cannone G, Berto L, Malhaire F, Ferguson G, Fouillen A, Balor S, Font-Ingles J, Llebaria A, Goudet C, Kotecha A et al..  2025.  Conformational diversity in class C GPCR positive allosteric modulation.. Nat Commun. 16(1):619.
Hansen MM, Edwards C, Grossen C, Kardos M, Laikre L, Ramakrishnan U.  2025.  Conservation Genomics-Making a Difference.. Mol Ecol. 34(23):e70191.
Krishnan H, Muzaffar S, Sharma S, Ramya V, Ghosh A, Sowdhamini R, Padinjat R.  2025.  Conserved biochemical activity and function of phosphatidylinositol 5 phosphate 4 kinase regulates growth & development.
Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Sreepadmanabh M, Ganesh M, Langthasa J, Bhat R, Bhattacharjee T.  2025.  Distinct Chemical Cues Reprogram Cellular and Multicellular Phenotypes in Ovarian Cancer Spheroids.. Small. :e06120.
Kumari J, Uthaman A, Bose S, Kundu A, Sharma V, Dutta S, Dhar A, Roy S, Srinivasan R, Pande S et al..  2025.  Distinct filament morphology and membrane tethering features of the dual FtsZ paralogs in Odinarchaeota.. EMBO J.
Baniya S., Neupane MK, Thaker V.R, Goswami, Ramachandran V..  2025.  The dynamics of cave roost use by bats in the central Himalayas of Nepal: implications for conservation.
D'Andrea R, Barabás G, Dalrymple SE, Foden W, Genovesi P, Krishnadas M, Leibold MA, McPeek MA, Moehrenschlager A, Rodriguez JPaul et al..  2025.  Ecological Risk-Benefit Analysis for Assisted Colonization.. Glob Chang Biol. 31(11):e70613.
Solari KA, Morgan S, Poyarkov AD, Weckworth B, Samelius G, Sharma K, Ostrowski S, Ramakrishnan U, Kubanychbekov Z, Kachel S et al..  2025.  Exceedingly low genetic diversity in snow leopards due to persistently small population size.. Proc Natl Acad Sci U S A. 122(41):e2502584122.
Goswami S', Mukherjee S, Ahmed N', Sreepadmanabh M', Bhattacharjee T', Bhat R', Saini D', Ghosh A'.  2025.  Frequency-Chirped Actuation of Chiral Magnetic Microbots for Viscosity Mapping in Heterogenous Media: From Model Fluids to Living Cells.. ACS Nano. 19(41)
Goswami S', Mukherjee S, Ahmed N', Sreepadmanabh M', Bhattacharjee T', Bhat R', Saini D', Ghosh A'.  2025.  Frequency-Chirped Actuation of Chiral Magnetic Microbots for Viscosity Mapping in Heterogenous Media: From Model Fluids to Living Cells.. ACS Nano. 19(41)
Sahu S', Baid N', Aggarwal D', Sharma A', Gun M', Molla S', Sinha A', Dwivedi A.P', Tuli A', Sharma M' et al..  2025.  Fundamental role of spatial positioning of Mycobacterium tuberculosis in mycobacterial survival in macrophages.. Nature Communications.
Abbondanzieri EA, Badrinarayanan AB, Barillà D, Bell SD, Blombach F, Bouet JY, Bulgheresi S, Cao QAD, Dame RT, Dekker C et al..  2025.  Future Directions of the Prokaryotic Chromosome Field.. Mol Microbiol. 123(2):89-100.
Abbondanzieri EA, Badrinarayanan AB, Barillà D, Bell SD, Blombach F, Bouet JY, Bulgheresi S, Cao QAD, Dame RT, Dekker C et al..  2025.  Future Directions of the Prokaryotic Chromosome Field.. Mol Microbiol. 123(2):89-100.
Abbondanzieri EA, Badrinarayanan AB, Barillà D, Bell SD, Blombach F, Bouet JY, Bulgheresi S, Cao QAD, Dame RT, Dekker C et al..  2025.  Future Directions of the Prokaryotic Chromosome Field.. Mol Microbiol. 123(2):89-100.
Medina I, Exnerová A, Daňková K, Penacchio O, Sherratt TN, Albrecht T, Baidya S, Bosque RJanke, Brown H, Burdfield-Steel E et al..  2025.  Global selection on insect antipredator coloration.. Science. 389(6767):1336-1341.
Medina I, Exnerová A, Daňková K, Penacchio O, Sherratt TN, Albrecht T, Baidya S, Bosque RJanke, Brown H, Burdfield-Steel E et al..  2025.  Global selection on insect antipredator coloration.. Science. 389(6767):1336-1341.
MacDonald E, Forrester A, Valades-Cruz CA, Madsen TD, Hetmanski JHR, Dransart E, Ng Y, Godbole R, Shp AAkhil, Leconte L et al..  2025.  Growth factor-triggered de-sialylation controls glycolipid-lectin-driven endocytosis.. Nat Cell Biol.
MacDonald E, Forrester A, Valades-Cruz CA, Madsen TD, Hetmanski JHR, Dransart E, Ng Y, Godbole R, Shp AAkhil, Leconte L et al..  2025.  Growth factor-triggered de-sialylation controls glycolipid-lectin-driven endocytosis.. Nat Cell Biol.
Gandhivel VHari-Sunda, Shivaprasad PV.  2025.  Histone variants: Distinct building blocks of the chromatin acting at the core.. Curr Opin Plant Biol. 89:102829.
Agrawal R, Pal VKumar, S SK, Menon GJayan, Singh IRaj, Malhotra N, S NC, Ganesh K, Rajmani RS, Seshasayee ASai Narain et al..  2025.  Hydrogen sulfide (H2S) coordinates redox balance, carbon metabolism, and mitochondrial bioenergetics to suppress SARS-CoV-2 infection.. PLoS Pathog. 21(5):e1013164.
Ansil BR, Sanyal A, Sreenivas D, Garg KM, Ramakrishnan U, Chattopadhyay B.  2025.  Identification of Distinct Rodent-Associated Adenovirus Lineages from Mixed-Use Landscape.. Ecohealth.
Daniel RFern, Kannan SK, Daroch N, Ganesan S, Mozaffer F, Srikantaiah V, Shashidhara LSubrahmany, Mishra R, Ishtiaq F.  2025.  Identifying bellwether sewershed sites for sustainable disease surveillance in Bengaluru, India: a longitudinal study.
Zalevsky AO, Vallat B, Webb BM, Tangmunarunkit H, Sekharan MR, Shafaeibejestan A, Ganesan S, Sagendorf J, Jeffries CM, Trewhella J et al..  2025.  IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.. J Mol Biol. :169598.
Zalevsky AO, Vallat B, Webb BM, Tangmunarunkit H, Sekharan MR, Shafaeibejestan A, Ganesan S, Sagendorf J, Jeffries CM, Trewhella J et al..  2025.  IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.. J Mol Biol. :169598.
Iyer A, Alva A, Granada AE, Chakrabarti S.  2025.  Inheritable cell-states shape drug-persister correlations and population dynamics in cancer cells.. PLoS Comput Biol. 21(9):e1013446.
Thiruvaimozhi YV ", Borah J, Kala CP, Kunte K, Patel B, Sreejith KA, Thadani R, Osuri A.M, Ghosh-Harihar M.  2025.  Long-term ecological monitoring in India: A synthesis..
Gregori M, Pereira GJS, Allen R, West N, Chau K-Y, Cai X, Bostock MP, Bolsover SR, Keller M, Lee C-Y et al..  2025.  Lysosomal TPC2 channels disrupt Ca2+ entry and dopaminergic function in models of LRRK2-Parkinson's disease.
Gregori M, Pereira GJS, Allen R, West N, Chau K-Y, Cai X, Bostock MP, Bolsover SR, Keller M, Lee C-Y et al..  2025.  Lysosomal TPC2 channels disrupt Ca2+ entry and dopaminergic function in models of LRRK2-Parkinson's disease.
Gregori M, Pereira GJS, Allen R, West N, Chau K-Y, Cai X, Bostock MP, Bolsover SR, Keller M, Lee C-Y et al..  2025.  Lysosomal TPC2 channels disrupt Ca2+ entry and dopaminergic function in models of LRRK2-Parkinson's disease.
Umar I, Gulzar S-E-J, Sundaramurthy V.  2025.  M. tuberculosis surface sulfoglycolipid SL-1 activates the mechanosensitive channel TRPV4 to enhance lysosomal biogenesis and exocytosis in macrophages. Mol Biol Cell. 36(6):ar76.
Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KBharadwaj, Arvind P, Rupanagudi KValli, Maitra A, Nagabandi T et al..  2025.  Mapping genetic diversity with the GenomeIndia project.. Nat Genet. 57(4):767-773.
Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KBharadwaj, Arvind P, Rupanagudi KValli, Maitra A, Nagabandi T et al..  2025.  Mapping genetic diversity with the GenomeIndia project.. Nat Genet. 57(4):767-773.
Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KBharadwaj, Arvind P, Rupanagudi KValli, Maitra A, Nagabandi T et al..  2025.  Mapping genetic diversity with the GenomeIndia project.. Nat Genet. 57(4):767-773.
Goyal P, Dhanabalan KV, Scalise M, Friemann R, Indiveri C, Dobson RCJ, Vinothkumar KR, Ramaswamy S.  2025.  Molecular determinants of Neu5Ac binding to a tripartite ATP independent periplasmic (TRAP) transporter.
Rathore S, Gahlot D, Castin J, Pandey A, Arvindekar S, Viswanath S, Thukral L.  2025.  Multiscale simulations reveal architecture of NOTCH protein and ligand specific features.. Biophys J. 124(2):393-407.
Vivek Hari Sundar Gandhivel, Sotelo-Parrilla P, Raju S, Jha S, Gireesh A, Harshith CY, Gut F, Vinothkumar KR, Berger F, A. Jeyaprakash A et al..  2025.  An Oryza-specific histone H4 variant predisposes H4 lysine 5 acetylation to modulate salt stress responses.
Vivek Hari Sundar Gandhivel, Sotelo-Parrilla P, Raju S, Jha S, Gireesh A, Harshith CY, Gut F, Vinothkumar KR, Berger F, A. Jeyaprakash A et al..  2025.  An Oryza-specific histone H4 variant predisposes H4 lysine 5 acetylation to modulate salt stress responses.
Vivek Hari Sundar Gandhivel, Sotelo-Parrilla P, Raju S, Jha S, Gireesh A, Harshith CY, Gut F, Vinothkumar KR, Berger F, A. Jeyaprakash A et al..  2025.  An Oryza-specific histone H4 variant predisposes H4 lysine 5 acetylation to modulate salt stress responses.
Barneda D, Janardan V, Swales J, Ciaccia M, Goodwin R, Cosulich S, Raghu P, Clark J, Stephens L, Hawkins P.  2025.  Phosphoinositide acyl chain diversity: comparative analysis across species and mouse tissues.. Biochim Biophys Acta Mol Cell Biol Lipids. 1870(6):159640.
Barneda D, Janardan V, Swales J, Ciaccia M, Goodwin R, Cosulich S, Raghu P, Clark J, Stephens L, Hawkins P.  2025.  Phosphoinositide acyl chain diversity: comparative analysis across species and mouse tissues.
Kaushik R, Pandey S, Prakash A, Ganatra F, Abe T, Kiyonari H, Ladher RK.  2025.  Role of Pcdh15 in the development of intrinsic polarity of inner ear hair cells.. PLoS Genet. 21(8):e1011825.
Lall S, Balaram P, Mathew MK, Gosavi S.  2025.  Sequence of the SARS-CoV-2 Spike Transmembrane Domain Encodes Conformational Dynamics.. J Phys Chem B. 129(1):194-209.
Gautam H, Berzaghi F, Thanikodi M, Ravichandran A, Sreeman SM, Sankaran M.  2025.  Should elephants graze or browse? The nutritional and functional consequences of dietary variation in a mixed-feeding megaherbivore. R Soc Open Sci. 12(11):250939.
Bartl B, Schoeberl UE, Valieris R, Fitz J, Roeder K, Vinothkumar KR, Gundinger B, Da Silva ITojal, Pavri R.  2025.  Somatic hypermutation patterns are shaped by both motif position and sequence grammar.. EMBO J.
Yau EYu Hin, Jones EE, Tsang TPak Nok, Xing S, Corlett RT, Roehrdanz P, Lohman DJ, Lee AKai Chi, Hai CWai Ching, Chowdhury S et al..  2025.  Spatial occurrence records and distributions of tropical Asian butterflies.
Ganguly D, Srivathsa A, Vasudev D, Ramakrishnan U.  2025.  Three's Company: Human infrastructure and diminishing savannas accentuate meso-carnivore interactions in a shared landscape of western India..
Majumdar S, Bammidi LSowjanya, Naik HC, Manhas A, Baro R, Kalita A, Naskar AJyoti, Nidharshan S, Bariha GS, Notani D et al..  2025.  upstream deletion leads to dysregulation of and autosomal gene expression.. Genome Res.
2026
Riva F., Schmucki R., Cooke R., Balalaikins M., Barea-Azcón J.M, Basu D.N, Böhm M., Bonebrake T.C, Chowdhury S., Comray O. et al..  2026.  Addressing Gaps in Butterfly Population Monitoring to Catalyze Global Insect Conservation. Conservation Letter.
Kalathera J, Jaiswal P, Mandal N, Patel V, Guttal V, Krishna S, Pande S.  2026.  Bottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacterium.. PLoS Biol. 24(1):e3003499.
Talluri S, Varma S, Krishna PS, Banerjee A, Iyer M, Ganji M, Sarkar S, Mayor S.  2026.  BPS2026 – Membrane proximal actin cytoskeleton and protein crowding synergistically modulate the mesoscale mobility of membrane components in the cell membrane. Biophysical Journal. 125(4)
Arvindekar SM, Golatkar O, Viswanath S.  2026.  BPS2026 – PickET: An unsupervised method for localizing macromolecules in cryo-electron tomograms. Biophysical Journal. 125(4)
Agarwal RGirdhar, Iyer SSuresh, Barbora A, Desai M, Gadgil Y, Jana SChandra, Ray K.  2026.  EB1 surges promote ciliary outer-segment growth through periodic tubulin influxes into the Drosophila olfactory cilia.. J Cell Sci. 139(2)
Gandhivel VHari-Sunda, Raju S, Shivaprasad PV.  2026.  Immunofluorescence Staining and Microscopic Imaging of Plant Nuclei for Epigenetic Modifications.. Methods Mol Biol. 2988:83-92.
Majila K, Golatkar O, Viswanath S.  2026.  Integrative modeling with AlphaFold.. Curr Opin Struct Biol. 98:103239.
Bagade N, Sreepadmanabh M, Ganesan G, Bhattacharjee T.  2026.  Physico-chemical regulation of bacterial growth success under 3D confinement.. Soft Matter.
Kelber A, Gilmour KM, Sane SP.  2026.  Sensory biology in a changing world: multisensory systems and interdisciplinary collaboration.. J Exp Biol. 229(Suppl_1)
Pal AKumar, Gandhivel VHari-Sunda, Shivaprasad PV.  2026.  Targeted Bisulfite Sequencing and DNA Methylation Analysis in Rice Endosperm and Other Tissues.. Methods Mol Biol. 2988:71-82.
Ganguly D, Srivathsa A, Vasudev D, Ramakrishnan U.  2026.  Three's Company: Human infrastructure and diminishing savannas accentuate meso-carnivore interactions in a shared landscape of western India. Biological Conservation. 313:111618.

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