Author Title Type [ Year(Asc)]
2026
Gandhivel VHari-Sunda, Raju S, Shivaprasad PV.  2026.  Immunofluorescence Staining and Microscopic Imaging of Plant Nuclei for Epigenetic Modifications.. Methods Mol Biol. 2988:83-92.
Pal AKumar, Gandhivel VHari-Sunda, Shivaprasad PV.  2026.  Targeted Bisulfite Sequencing and DNA Methylation Analysis in Rice Endosperm and Other Tissues.. Methods Mol Biol. 2988:71-82.
2025
Roychowdhury A, Rao M, Truskinovsky L.  2025.  Active drive towards elastic spinodals.
Sondhi S, Singh RPratap, Pawar U, Kunte K.  2025.  Additions to the moth (Lepidoptera) fauna of India from the eastern Himalaya and northeastern region: Part 2. Tropical Lepidoptera Research. 35
Mungi N, Galetti M, Ratnam J, Chala D, Sanín MJosé, Svenning J-C.  2025.  Alien plants and novel ecosystems in the Greater Tropics..
Prabantu VManjveekar, Tandon H, Sandhya S, Sowdhamini R, Srinivasan N.  2025.  The alteration of structural network upon transient association between proteins studied using graph theory.. Proteins. 93(1):217-225.
Phale A, Tewari A, Tendulkar G, Das R, Srinivasan S, Chakrabarti KS.  2025.  Analyzing sub-millisecond timescale protein dynamics using eCPMG experiments.. J Biomol NMR.
Notani D.  2025.  Androgen receptor activation for breast cancer therapy.. Nat Rev Cancer.
Powers 11.Jennifer S, , Ratnam J, Slade EM.  2025.  Announcement: Biotropica's New Subject Editors 2025.
Leong JV, Matos-Maraví P, Núñez R, Nunes R, Liang W, Kunte K.  2025.  Around the World in 26 Million Years: Diversification and Biogeography of Pantropical Grass-Yellow Eurema Butterflies (Pieridae: Coliadinae). Journal of Biogeography.
Ghosh S, Bishnoi B, Das S.  2025.  Artery regeneration: Molecules, mechanisms and impact on organ function.. Semin Cell Dev Biol. 171:103611.
John J, Bapat A, Gahlaut S, Luke N, Kumar R, Thakur Y, Mathew C, Konnur A, Namewar N, Reddy R et al..  2025.  Assessing germline mutational profile and its clinicopathological associations in Triple Negative Breast Cancer.. Cancer Genet. 296-297:65-75.
R. Rao Y, Sankaran M, Jathanna D, Andheria A.  2025.  Assessing ungulate response to conservation-oriented village relocations and their associated management practices in a tiger reserve in central India.
Han X, Anthon C, Geissler ASven, Sabarinathan R, Seemann SErnst, Havgaard JHull, Gorodkin J.  2025.  Associating cancer-related RNA structure disrupting SNPs in LincRNAs to function.. BMC Genomics. 26(1):1100.
Beaurepaire AL, Hogendoorn K, Kleijn D, Otis GW, Potts SG, Singer TL, Boff S, Pirk C, Settele J, Paxton RJ et al..  2025.  Avenues towards reconciling wild and managed bee proponents.. Trends Ecol Evol. 40(1):7-10.
Seshasayee ASai Narain.  2025.  Bacterial Genomes Trees and Networks. Bacterial Genomes Trees and Networks. 1:254.
Ramesh H, Malhotra R, Khurana S, Pandey D, Chhering T, Suryawanshi KRamesh.  2025.  Balancing act: persistence of the red fox in the dog-dominated landscapes of the Trans-Himalaya.
Ravichandran A, Sivakumar A, Das R.  2025.  Beyond degradation tags: How FAT10 and ubiquitin shape substrate energy landscapes.. Essays Biochem.
Anujan K, Shabnam A, Ali I, Gummadi AKumar, Sankaran M, Krishnadas M, Naeem S.  2025.  Biodiversity effects on seedling growth are modified by light environment across functional groups.. Ecol Appl. 35(5):e70087.
Yadav V, Sahoo S, Malhotra N, Mishra R, Sreedharan S, Rajmani RS, Shanmugam S, Shandil RK, Narayanan S, Thacker VV et al..  2025.  Bioenergetic reprogramming of macrophages reduces drug tolerance in Mycobacterium tuberculosis.. Nat Commun. 16(1):9370.
Viswanath S.  2025.  BPS2025 - Recent developments in integrative structural modeling of macromolecular assemblies. Biophysical Journal. 124(3)
Das SSwayam Pra, Prabantu VManjveekar, Sowdhamini R, Srinivasan N.  2025.  BPS2025 - Structural network comparison of domains across remote homologs. Biophysical Journal. 124(3):215a-216a.
Nath VR, Krishnan H, Mishra S, Raghu P.  2025.  Ca2+ binding to Esyt modulates membrane contact site density in Drosophila photoreceptors.. J Cell Biol. 224(5)
Agarwal P.  2025.  Caenorhabditis elegans germline flux pulls its stem-cell niche cells into shape.. J Biosci. 50
SAWANT DATTAPRASAD, JOSHI SHANTANU, PAWAR UJWALA, NAWGE VIRAJ, Kunte K.  2025.  Caliphaea sinuofurcata sp. nov. (Odonata: Zygoptera: Calopterygidae) from Arunachal Pradesh, India. Zootaxa. 5637:139-154.
Landschaft-Berliner D, Goldstein K, Teichman G, Anava S, Gingold H, Salzberg Y, Rieger I, Levy N, Pechuk V, Setty H et al..  2025.  Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.. Nat Neurosci.
Sundaramurthy V, Strauss E.  2025.  Combating Tuberculosis: Obstacles, Innovations, and the Road Ahead.. ACS Infect Dis. 11(7):1754-1755.
Nikhat A, Shaikh A, Chakrabarti S.  2025.  Combining lineage correlations and a small molecule inhibitor to detect circadian control of the cell cycle. Cell Press. 28(4)
Nikhat A, Shaikh A, Chakrabarti S.  2025.  Combining lineage correlations and a small molecule inhibitor to detect circadian control of the cell cycle.. iScience. 28(4):112269.
Sidhanta SPrakash Da, Sowdhamini R, Srinivasan N.  2025.  Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins.. Proteins. 93(1):197-208.
Bheemireddy S, Menon R, Chavali S, Sowdhamini R, Srinivasan N.  2025.  Computational Analyses of Bifurcated Inter-Protein Interactions in Protein-Protein Assemblies Reveal Their Pivotal Role in Conferring Stability.. Proteins.
Bheemireddy S, Sowdhamini R, Srinivasan N.  2025.  Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly.. PLoS One. 20(1):e0317187.
Kanojia A, Bhaduri A, Nayak S, Sowdhamini R, Mudgil Y.  2025.  Computational exploration of Arabidopsis thaliana N-Myc downregulated-like-1 for protein–protein interaction and phylogenetic conservation.
Pathak A, Sowdhamini R.  2025.  Computational structural analysis sheds light on the molecular grammar of gap junction proteins.. Biochimie.
Cannone G, Berto L, Malhaire F, Ferguson G, Fouillen A, Balor S, Font-Ingles J, Llebaria A, Goudet C, Kotecha A et al..  2025.  Conformational diversity in class C GPCR positive allosteric modulation.. Nat Commun. 16(1):619.
Hansen MM, Edwards C, Grossen C, Kardos M, Laikre L, Ramakrishnan U.  2025.  Conservation Genomics-Making a Difference.. Mol Ecol. 34(23):e70191.
Ramakrishnan U.  2025.  Conservation: Sequencing and saving the Saola? Curr Biol. 35(18):R878-R880.
Krishnan H, Muzaffar S, Sharma S, Ramya V, Ghosh A, Sowdhamini R, Padinjat R.  2025.  Conserved biochemical activity and function of phosphatidylinositol 5 phosphate 4 kinase regulates growth & development.
Mukardamwala MS, Trivedi PG, Mehta D, Viswanathan A.  2025.  Correlates of Tree Cavity Presence in a Tropical Deciduous Forest of the Northern Western Ghats, India.
Prakash A, Raman S, Kaushik R, Manchanda P, Iyer AS, Ladher RK.  2025.  Coupling between spatial compartments integrates morphogenetic patterning in the organ of Corti.. PLoS Biol. 23(9):e3003350.
Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Rajashekar P, Krishnan A, Varma V, Ratnam J, Sankaran M, Lehmann CER.  2025.  Decadal scale fire dynamics in savannas and forests of the Nilgiri Biosphere Reserve, India.
Shaheen I, Malik RA, Sankaran M, Shah MA.  2025.  Differential impacts of grazing on grassland plant diversity, biomass, soil C, and soil N across an elevation gradient. Ecological Applications.
Somashekar BPriya, Bhalla USingh.  2025.  Discriminating neural ensemble patterns through dendritic computations in randomly connected feedforward networks.. Elife. 13
Sreepadmanabh M, Ganesh M, Langthasa J, Bhat R, Bhattacharjee T.  2025.  Distinct Chemical Cues Reprogram Cellular and Multicellular Phenotypes in Ovarian Cancer Spheroids.. Small. :e06120.
Kumari J, Uthaman A, Bose S, Kundu A, Sharma V, Dutta S, Dhar A, Roy S, Srinivasan R, Pande S et al..  2025.  Distinct filament morphology and membrane tethering features of the dual FtsZ paralogs in Odinarchaeota.. EMBO J.
Cock MJW, Buddie AG, Cafa G, Chiba H, Kizhakke AGirish, Yu-Feng H, Kunte K.  2025.  DNA barcodes narrow down the possible sources of introductions of an invasive banana skipper, Erionota torus Evans (Lepidoptera, Hesperiidae). CABI Agriculture and Bioscience. 6(1)
Jean-François F, Pratibha S, Baptiste R, Jean-Pierre F, Jérôme C, Deepa A, Claude E.  2025.  Is Drosophila Larval Competition Involved in Incipient Speciation? J Chem Ecol. 51(1):2.
Baniya S., Neupane MK, Thaker V.R, Goswami, Ramachandran V..  2025.  The dynamics of cave roost use by bats in the central Himalayas of Nepal: implications for conservation.
D'Andrea R, Barabás G, Dalrymple SE, Foden W, Genovesi P, Krishnadas M, Leibold MA, McPeek MA, Moehrenschlager A, Rodriguez JPaul et al..  2025.  Ecological Risk-Benefit Analysis for Assisted Colonization.. Glob Chang Biol. 31(11):e70613.
Powers JS, Brearley FQ, Ratnam J, Slade EM.  2025.  Editorial: Biotropica Announces a New Paper Category: Synthesis.
Tiruvaimozhi YV, Teegalapalli K, Reddy A, Murali A, Datta A, Krishnan A, Ratnam J, Sankaran M, Ongole S, Kasinathan S et al..  2025.  Effects of sampling methodology on phenology indices: Insights from sites across India and modelling.. J Biosci. 50
Mukunda CL, Sane SP.  2025.  Encoding of antennal position and velocity by the Johnston's organ in hawkmoths.. J Exp Biol.
Sharma Y, Bhatia P, Rangappa G, Saha S, Raghu P.  2025.  Enhanced Notch dependent gliogenesis and delayed physiological maturation underlie neurodevelopmental defects in Lowe syndrome.. EMBO Mol Med.
Tamilkumar VN, Purushothama H, Ladher RK.  2025.  Epithelial fusion is mediated by a partial epithelial-mesenchymal transition.. Biol Open. 14(9)
Krishnaswamy M, Seshasayee ASai Narain.  2025.  The evolution of function in the DNA binding domain of the CRP/FNR family.. Genome Biol Evol.
Nandy M, Krishnaswamy M, Sharda M, Seshasayee ASai Narain.  2025.  The Evolution of Sequence Specificity in a DNA Binding Protein Family.. J Mol Biol. 437(14):169177.
Dubey A, Muthu G, Seshasayee ASai Narain.  2025.  Evolution of transcription factor-containing superfamilies in Eukaryotes.. Journal of Molecular Biology. :168959.
Solari KA, Morgan S, Poyarkov AD, Weckworth B, Samelius G, Sharma K, Ostrowski S, Ramakrishnan U, Kubanychbekov Z, Kachel S et al..  2025.  Exceedingly low genetic diversity in snow leopards due to persistently small population size.. Proc Natl Acad Sci U S A. 122(41):e2502584122.
Seshadri A, Badrinarayanan A.  2025.  Exonuclease action of replicative polymerase gamma drives damage-induced mitochondrial DNA clearance. EMBO Reports. :1-21.
Das U, Regati DReddy, Kumar J, Sowdhamini R.  2025.  Exploration of Natural Products for Targeting IDH1/2 Mutations in Acute Myeloid Leukemia Through Ligand-Based Pharmacophore Screening, Docking, ADME-T, and Molecular Dynamic Simulation Approaches.. Bioinform Biol Insights. 19:11779322251399077.
Tiwari V, Pathak A, Poojary T, Sowdhamini R, Surolia A.  2025.  Exploration of structural space of Cus17 lectin with glycans using molecular docking and simulation studies.. Comput Struct Biotechnol J. 27:3319-3327.
Saha S, K BA, Meel S, Notani D, Sengupta K.  2025.  Fibrillarin regulates epithelial integrity via EZH2-mediated modulation of scribble expression.. Cell Rep. 44(12):116608.
Nelson RA, Sullivan LL, Hersch-Green EI, Sankaran M.  2025.  Forb diversity globally is harmed by nutrient enrichment but can be rescued by large mammalian herbivory. Communications Biology. 8
Kumar VRavi, Buddh S, Singhal S, Prakash A, Agashe D.  2025.  Founders predict trait evolution and population performance after evolutionary rescue in the red flour beetle.. Proc Natl Acad Sci U S A. 122(36):e2506244122.
Benitez LM, Parr CL, Sankaran M, Ryan CM.  2025.  Fragmentation in patchy ecosystems: a call for a functional approach.. Trends Ecol Evol. 40(1):27-36.
Goswami S', Mukherjee S, Ahmed N', Sreepadmanabh M', Bhattacharjee T', Bhat R', Saini D', Ghosh A'.  2025.  Frequency-Chirped Actuation of Chiral Magnetic Microbots for Viscosity Mapping in Heterogenous Media: From Model Fluids to Living Cells.. ACS Nano. 19(41)
Ahmad M, Rathee S, Krishnadas M.  2025.  From low to high elevations, flowers adapt traits and phenology to climate, but phenology-trait relationships weak. Functional Ecology. :1-14.
Majila K, Arvindekar S, Jindal M, Viswanath S.  2025.  Frontiers in integrative structural modeling of macromolecular assemblies. QRB Discovery. 6:e3.
Sahu S', Baid N', Aggarwal D', Sharma A', Gun M', Molla S', Sinha A', Dwivedi A.P', Tuli A', Sharma M' et al..  2025.  Fundamental role of spatial positioning of Mycobacterium tuberculosis in mycobacterial survival in macrophages.. Nature Communications.
Abbondanzieri EA, Badrinarayanan AB, Barillà D, Bell SD, Blombach F, Bouet JY, Bulgheresi S, Cao QAD, Dame RT, Dekker C et al..  2025.  Future Directions of the Prokaryotic Chromosome Field.. Mol Microbiol. 123(2):89-100.
Joshi S, Mohapatra S, Kumar D, Joshi A, Iyer M, Sowdhamini R.  2025.  GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database.. Database (Oxford). 2025
Medina I, Exnerová A, Daňková K, Penacchio O, Sherratt TN, Albrecht T, Baidya S, Bosque RJanke, Brown H, Burdfield-Steel E et al..  2025.  Global selection on insect antipredator coloration.. Science. 389(6767):1336-1341.
MacDonald E, Forrester A, Valades-Cruz CA, Madsen TD, Hetmanski JHR, Dransart E, Ng Y, Godbole R, Shp AAkhil, Leconte L et al..  2025.  Growth factor-triggered de-sialylation controls glycolipid-lectin-driven endocytosis.. Nat Cell Biol.
Gandhivel VHari-Sunda, Shivaprasad PV.  2025.  Histone variants: Distinct building blocks of the chromatin acting at the core.. Curr Opin Plant Biol. 89:102829.
Ansil BR, Viswanathan A, Ramachandran V, Yeshwanth HM, Sanyal A, Ramakrishnan U.  2025.  Host-Pathogen-Vector Continuum in a Changing Landscape: Potential Transmission Pathways for in a Small Mammal Community.. Ecol Evol. 15(4):e71085.
Agrawal R, Pal VKumar, S SK, Menon GJayan, Singh IRaj, Malhotra N, S NC, Ganesh K, Rajmani RS, Seshasayee ASai Narain et al..  2025.  Hydrogen sulfide (H2S) coordinates redox balance, carbon metabolism, and mitochondrial bioenergetics to suppress SARS-CoV-2 infection.. PLoS Pathog. 21(5):e1013164.
Kakani P, Dhamdhere SGanesh, Pant D, Joshi R, Mishra S, Pandey A, Notani D, Shukla S.  2025.  Hypoxia-induced CTCF mediates alternative splicing via coupling chromatin looping and RNA Pol II pause to promote EMT in breast cancer.. Cell Rep. 44(2):115267.
Ansil BR, Sanyal A, Sreenivas D, Garg KM, Ramakrishnan U, Chattopadhyay B.  2025.  Identification of Distinct Rodent-Associated Adenovirus Lineages from Mixed-Use Landscape.. Ecohealth.
Daniel RFern, Kannan SK, Daroch N, Ganesan S, Mozaffer F, Srikantaiah V, Shashidhara LSubrahmany, Mishra R, Ishtiaq F.  2025.  Identifying bellwether sewershed sites for sustainable disease surveillance in Bengaluru, India: a longitudinal study.
Zalevsky AO, Vallat B, Webb BM, Tangmunarunkit H, Sekharan MR, Shafaeibejestan A, Ganesan S, Sagendorf J, Jeffries CM, Trewhella J et al..  2025.  IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.. J Mol Biol. :169598.
Iyer A, Alva A, Granada AE, Chakrabarti S.  2025.  Inheritable cell-states shape drug-persister correlations and population dynamics in cancer cells.. PLoS Comput Biol. 21(9):e1013446.
Jadhav M.P', Verma S', Thirumalai V'.  2025.  Ionic conductances driving tonic firing in Purkinje neurons of larval zebrafish.. Journal of Physiology.
Shrivastava A, Kamma H, Das R, Ainavarapu SRama Koti.  2025.  Ionic Liquid-Induced Modulation of Ubiquitin Stability: The Dominant Role of Hydrophobic Interactions.. Langmuir. 41(9):5823-5837.
Prakash A, Weninger J, Singh N, Raman S, Rao M, Kruse K, Ladher RK.  2025.  Junctional force patterning drives both positional order and planar polarity in the auditory epithelia.. Nat Commun. 16(1):3927.
VijayRaghavan K.  2025.  K. VijayRaghavan.. Curr Biol. 35(14):R695-R697.
Jahnavi J, Pritha D, V MAshwini, Vijay B, R PGuntupalli, Anjali G, Sandeep P, Navendu P, Ishan A, Kartik S et al..  2025.  Linking eras and data: natural history collections as the foundation of India’s biodiversity science..
Adhikashreni IS, Joseph AMary, Phadke S, Badrinarayanan A.  2025.  Live tracking of replisomes reveals nutrient-dependent regulation of replication elongation rates in Caulobacter crescentus.. Curr Biol. 35(8):1816-1827.e3.
Thiruvaimozhi YV ", Borah J, Kala CP, Kunte K, Patel B, Sreejith KA, Thadani R, Osuri A.M, Ghosh-Harihar M.  2025.  Long-term ecological monitoring in India: A synthesis..
Paramanik' R', Rajput V', Malik V', Nannaware K', Matra S', Joshi S', Kumar S', Samson R', Yadav RK', Shah P' et al..  2025.  Long-Term Genomic Surveillance of SARS-CoV-2 in Campus Wastewater Depicts Lineage Trends and Public Health Implications during and after Omicron Waves.
Pal AKumar, Rana S, Dey R, Shivaprasad PV.  2025.  Loss of function of chromatin remodeler OsCLSY4 leads to RdDM-mediated mis-expression of endosperm-specific genes affecting grain qualities.. PLoS Genet. 21(12):e1011956.
Gregori M, Pereira GJS, Allen R, West N, Chau K-Y, Cai X, Bostock MP, Bolsover SR, Keller M, Lee C-Y et al..  2025.  Lysosomal TPC2 channels disrupt Ca2+ entry and dopaminergic function in models of LRRK2-Parkinson's disease.
Umar I, Gulzar S-E-J, Sundaramurthy V.  2025.  M. tuberculosis surface sulfoglycolipid SL-1 activates the mechanosensitive channel TRPV4 to enhance lysosomal biogenesis and exocytosis in macrophages. Mol Biol Cell. 36(6):ar76.
Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KBharadwaj, Arvind P, Rupanagudi KValli, Maitra A, Nagabandi T et al..  2025.  Mapping genetic diversity with the GenomeIndia project.. Nat Genet. 57(4):767-773.
Puri A, Tripathi V, Das R.  2025.  Measurement of Substrate SUMOylation in Real Time by Fluorescence Spectroscopy.. Methods Mol Biol. 2957:159-168.
Kumar A, Shahul AK, Bhalla USingh.  2025.  Mechanisms and implications of high depolarization baseline offsets in conductance-based neuronal models.. J Neurophysiol.
Manjunath M, Sane SP.  2025.  Mechanosensory cephalic bristles mediate rapid flight initiation in hawkmoths.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Turner LM, Thorpe CJ, Collins M, Raj S, Shukla T, Spicer JI, Knight ME, Sharma D, Kunte K.  2025.  Metabolic Diversity of a Widely Distributed Tropical Freshwater Crab Is Not Underpinned by Genetic Differences. Journal of Biogeography.
NARAYANASAMY NISHANT, BINGHAM EMMA, FADERO TANNER, G. BOZDAG OZAN, RATCLIFF WILLIAMC, YUNKER PETER, THUTUPALLI SHASHI.  2025.  Metabolically driven flows enable exponential growth in macroscopic multicellular yeast.
Rajput V, Pramanik R, Nannaware K, Shah P, Bhalerao A, Jain N, Shashidhara L.S., Kamble S, Dastager S, Dharne M.  2025.  Metagenomics based longitudinal monitoring of antibiotic resistome and microbiome in the inlets of wastewater treatment plants in an Indian megacity.

Pages