Author Title [ Type(Desc)] Year
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Book
Seshasayee ASai Narain.  2025.  Bacterial Genomes Trees and Networks. Bacterial Genomes Trees and Networks. 1:254.
Book Chapter
Das S, Singh RRaj, Shivaprasad PV.  2017.  Artificial Induction and Maintenance of Epigenetic Variations in Plants. Plant Gene Silencing: Mechanisms and Applications. :59-75.
Das S, Singh RRaj, Shivaprasad PV.  2017.  Artificial Induction and Maintenance of Epigenetic Variations in Plants. Plant Gene Silencing: Mechanisms and Applications. :59-75.
Singh A, Krishna S.  2019.  Immunomodulatory and Therapeutic Potential of Marine Flora Products in the Treatment of Cancer. Bioactive Natural Products for the Management of Cancer: from Bench to Bedside . :139-166.
Journal
Powers 11.Jennifer S, , Ratnam J, Slade EM.  2025.  Announcement: Biotropica's New Subject Editors 2025.
Das SDas Soumit, Singh R.R, Shivaprasad PV.  2017.  Artificial induction and maintenance of epigenetic variations in plants..
Das SDas Soumit, Singh R.R, Shivaprasad PV.  2017.  Artificial induction and maintenance of epigenetic variations in plants..
R. Rao Y, Sankaran M, Jathanna D, Andheria A.  2025.  Assessing ungulate response to conservation-oriented village relocations and their associated management practices in a tiger reserve in central India.
Ramesh H, Malhotra R, Khurana S, Pandey D, Chhering T, Suryawanshi KRamesh.  2025.  Balancing act: persistence of the red fox in the dog-dominated landscapes of the Trans-Himalaya.
Kanojia A, Bhaduri A, Nayak S, Sowdhamini R, Mudgil Y.  2025.  Computational exploration of Arabidopsis thaliana N-Myc downregulated-like-1 for protein–protein interaction and phylogenetic conservation.
H K, S M, S S, V R, A G, R S, R P.  2025.  Conserved biochemical activity and function of phosphatidylinositol 5 phosphate 4 kinase regulates growth & development .
H K, S M, S S, V R, A G, R S, R P.  2025.  Conserved biochemical activity and function of phosphatidylinositol 5 phosphate 4 kinase regulates growth & development .
Raina R., D K, M S, S T, S K, S A, V K, S B, S G, RK P et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Raina R., D K, M S, S T, S K, S A, V K, S B, S G, RK P et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Raina R., D K, M S, S T, S K, S A, V K, S B, S G, RK P et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Raina R., D K, M S, S T, S K, S A, V K, S B, S G, RK P et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Raina R., D K, M S, S T, S K, S A, V K, S B, S G, RK P et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
Rajashekar P, Krishnan A, Varma V, Ratnam J, Sankaran M, Lehmann CER.  2025.  Decadal scale fire dynamics in savannas and forests of the Nilgiri Biosphere Reserve, India.
Powers JS, Brearley FQ, Ratnam J, Slade EM.  2025.  Editorial: Biotropica Announces a New Paper Category: Synthesis.
Daniel RFern, Kannan SK, Daroch N, Ganesan S, Mozaffer F, Srikantaiah V, Shashidhara LSubrahmany, Mishra R, Ishtiaq F.  2025.  Identifying bellwether sewershed sites for sustainable disease surveillance in Bengaluru, India: a longitudinal study.
Daniel RFern, Kannan SK, Daroch N, Ganesan S, Mozaffer F, Srikantaiah V, Shashidhara LSubrahmany, Mishra R, Ishtiaq F.  2025.  Identifying bellwether sewershed sites for sustainable disease surveillance in Bengaluru, India: a longitudinal study.
R P, V R, V M, K N, S M, S J, S K, R S, RK Y, P S et al..  2025.  Long-Term Genomic Surveillance of SARS-CoV-2 in Campus Wastewater Depicts Lineage Trends and Public Health Implications during and after Omicron Waves.
R P, V R, V M, K N, S M, S J, S K, R S, RK Y, P S et al..  2025.  Long-Term Genomic Surveillance of SARS-CoV-2 in Campus Wastewater Depicts Lineage Trends and Public Health Implications during and after Omicron Waves.
R P, V R, V M, K N, S M, S J, S K, R S, RK Y, P S et al..  2025.  Long-Term Genomic Surveillance of SARS-CoV-2 in Campus Wastewater Depicts Lineage Trends and Public Health Implications during and after Omicron Waves.
V R, R P, K N, P S, A B, N J, LS S, S K, S D, M D.  2025.  Metagenomics based longitudinal monitoring of antibiotic resistome and microbiome in the inlets of wastewater treatment plants in an Indian megacity.
V R, R P, K N, P S, A B, N J, LS S, S K, S D, M D.  2025.  Metagenomics based longitudinal monitoring of antibiotic resistome and microbiome in the inlets of wastewater treatment plants in an Indian megacity.
Barneda D, Janardan V, Swales J, Ciaccia M, Goodwin R, Cosulich S, Raghu P, Clark J, Stephens L, Hawkins P.  2025.  Phosphoinositide acyl chain diversity: comparative analysis across species and mouse tissues.
Barneda D, Janardan V, Swales J, Ciaccia M, Goodwin R, Cosulich S, Raghu P, Clark J, Stephens L, Hawkins P.  2025.  Phosphoinositide acyl chain diversity: comparative analysis across species and mouse tissues.
Srinivasan S, Pradhan DKumar, Rai S, Biswakarma A, Srinivasan U.  2025.  Poles Apart: The Structure and Composition of the Bird Community in Bamboo in the Eastern Himalaya.
Srinivasan S, Pradhan DKumar, Rai S, Biswakarma A, Srinivasan U.  2025.  Poles Apart: The Structure and Composition of the Bird Community in Bamboo in the Eastern Himalaya.
Narjala A, Shivaprasad PV.  2017.  Regulation of Plant microRNA Biogenesis.
Narjala A, Shivaprasad PV.  2017.  Regulation of Plant miRNA Biogenesis.
9. S K, SD K, H K, LB N, V V, R S, E G-W, BS H, RM B.  2025.  Sensing volatiles throughout the body: geographic- and tissue-specific olfactory receptor expression in the fig wasp.
9. S K, SD K, H K, LB N, V V, R S, E G-W, BS H, RM B.  2025.  Sensing volatiles throughout the body: geographic- and tissue-specific olfactory receptor expression in the fig wasp.
Yau EYu Hin, Jones EE, Tsang TPak Nok, Xing S, Corlett RT, Roehrdanz P, Lohman DJ, Lee AKai Chi, Hai CWai Ching, Chowdhury S et al..  2025.  Spatial occurrence records and distributions of tropical Asian butterflies.
Ravichandran A, Nallusamy S, Selvamani SBabu, Sowdhamini R.  2025.  Uncovering the transcription factors and metabolic pathways unique to proso millet and foxtail millet under salt stress through a comparative transcriptome approach.
Ravichandran A, Nallusamy S, Selvamani SBabu, Sowdhamini R.  2025.  Uncovering the transcription factors and metabolic pathways unique to proso millet and foxtail millet under salt stress through a comparative transcriptome approach.
Journal Article
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Prakash D, Ms A, Radhika B, Venkatesan R, Chalasani SH, Singh V.  2021.  1-Undecene from Pseudomonas aeruginosa is an olfactory signal for flight-or-fight response in Caenorhabditis elegans.. EMBO J. :e106938.
Arya CKumar, Yadav S, Fine J, Casanal A, Chopra G, Ramanathan G, Vinothkumar KR, Subramanian R.  2020.  A 2-Tyr-1-carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase.. Angew Chem Int Ed Engl.
Joshi RSudhir, Singh SPal, Panicker MM.  2019.  5-HT deletion protects against Clozapine-induced hyperglycemia.. J Pharmacol Sci. 139(2):133-135.
Swaminathan V, Kalappurakkal JMathew, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S et al..  2017.  Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions.. Proc Natl Acad Sci U S A. 114(40):10648-10653.
Swaminathan V, Kalappurakkal JMathew, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S et al..  2017.  Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions.. Proc Natl Acad Sci U S A. 114(40):10648-10653.
Lahree A, Baptista Sde Jesus S, Marques S, Perschin V, Zuzarte-Luís V, Goel M, Choudhary HHasan, Mishra S, Stigloher C, Zerial M et al..  2022.  Active APPL1 sequestration by Plasmodium favors liver-stage development.. Cell Rep. 39(9):110886.
Lahree A, Baptista Sde Jesus S, Marques S, Perschin V, Zuzarte-Luís V, Goel M, Choudhary HHasan, Mishra S, Stigloher C, Zerial M et al..  2022.  Active APPL1 sequestration by Plasmodium favors liver-stage development.. Cell Rep. 39(9):110886.
Saha S, Das A, Patra C, Anilkumar AA, Sil P, Mayor S, Rao M.  2022.  Active emulsions in living cell membranes driven by contractile stresses and transbilayer coupling. Proc Natl Acad Sci U S A.. 119(30):e2123056119.
Saha S, Das A, Patra C, Anilkumar AA, Sil P, Mayor S, Rao M.  2022.  Active emulsions in living cell membranes driven by contractile stresses and transbilayer coupling. Proc Natl Acad Sci U S A.. 119(30):e2123056119.
Islam Z, Saravanan B, Walavalkar K, Farooq U, Singh AKumar, Sabarinathan R, Thakur J, Pandit A, Henikoff S, Notani D.  2023.  Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.. Genome Res.
Islam Z, Saravanan B, Walavalkar K, Farooq U, Singh AKumar, Sabarinathan R, Thakur J, Pandit A, Henikoff S, Notani D.  2023.  Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.. Genome Res.
Islam Z, Saravanan B, Walavalkar K, Farooq U, Singh AKumar, Sabarinathan R, Thakur J, Pandit A, Henikoff S, Notani D.  2023.  Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.. Genome Res.
Barneda D, Janardan V, Niewczas I, Collins DM, Cosulich S, Clark J, Stephens LR, Hawkins PT.  2022.  Acyl chain selection couples the consumption and synthesis of phosphoinositides.. EMBO J. :e110038.
Kohl PL, Thulasi N, Rutschmann B, George EA, Steffan-Dewenter I, Brockmann A.  2020.  Adaptive evolution of honeybee dance dialects.. Proc Biol Sci. 287(1922):20200190.
Sondhi S, Singh RPratap, Pawar U, Kunte K.  2025.  Additions to the moth (Lepidoptera) fauna of India from the eastern Himalaya and northeastern region: Part 2. Tropical Lepidoptera Research. 35
Sondhi S, Singh RPratap, Pawar U, Kunte K.  2025.  Additions to the moth (Lepidoptera) fauna of India from the eastern Himalaya and northeastern region: Part 2. Tropical Lepidoptera Research. 35
Sarkar D, Shariq M, Dwivedi D, Krishnan N, Naumann R, Bhalla USingh, Ghosh HS.  2021.  Adult brain neurons require continual expression of the schizophrenia-risk gene Tcf4 for structural and functional integrity.. Transl Psychiatry. 11(1):494.
Sarkar D, Shariq M, Dwivedi D, Krishnan N, Naumann R, Bhalla USingh, Ghosh HS.  2021.  Adult brain neurons require continual expression of the schizophrenia-risk gene Tcf4 for structural and functional integrity.. Transl Psychiatry. 11(1):494.
Shariq M, Sahasrabuddhe V, Krishna S, Radha S, Bellampalli R, Dwivedi A, Cheramangalam R, Reizis B, Hébert J, Ghosh HS.  2021.  Adult neural stem cells have latent inflammatory potential that is kept suppressed by to facilitate adult neurogenesis.. Sci Adv. 7(21)
Shariq M, Sahasrabuddhe V, Krishna S, Radha S, Bellampalli R, Dwivedi A, Cheramangalam R, Reizis B, Hébert J, Ghosh HS.  2021.  Adult neural stem cells have latent inflammatory potential that is kept suppressed by to facilitate adult neurogenesis.. Sci Adv. 7(21)
Subhash N, Sundaramurthy V.  2021.  Advances in host-based screening for compounds with intracellular anti-mycobacterial activity.. Cell Microbiol. :e13337.
Subhash N, Sundaramurthy V.  2021.  Advances in host-based screening for compounds with intracellular anti-mycobacterial activity.. Cell Microbiol. :e13337.
Someshwar A, Holla B, Agarwal PPansari, Thomas A, Jose A, Joseph B, Raju B, Karle H, Muthukumaran M, Kodancha PG et al..  2020.  Adverse childhood experiences in families with multiple members diagnosed to have psychiatric illnesses.. Aust N Z J Psychiatry. :4867420931157.
Someshwar A, Holla B, Agarwal PPansari, Thomas A, Jose A, Joseph B, Raju B, Karle H, Muthukumaran M, Kodancha PG et al..  2020.  Adverse childhood experiences in families with multiple members diagnosed to have psychiatric illnesses.. Aust N Z J Psychiatry. :4867420931157.
Sturm S, Ramesh D, Brockmann A, Neupert S, Predel R.  2016.  Agatoxin-like peptides in the neuroendocrine system of the honey bee and other insects.. J Proteomics. 132:77-84.
Khurana TRoy, Sane SP.  2016.  Airflow and optic flow mediate antennal positioning in flying honeybees.. Elife. 5
Vaishnav MS, Kumari N, Srikanta S, Simha V, Krishnaswamy PR, Balaram P, Bhat N.  2024.  Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications.. Metab Syndr Relat Disord. 22(5):372-384.
Vaishnav MS, Kumari N, Srikanta S, Simha V, Krishnaswamy PR, Balaram P, Bhat N.  2024.  Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications.. Metab Syndr Relat Disord. 22(5):372-384.
Singh A, Thakur NL.  2021.  Allelopathic interaction among rocky intertidal invertebrates: sponge Cinachyrella cf. cavernosa and Zooxanthellate zoanthids Zoanthus sansibaricus. Hydrobiologia.
Prabantu VManjveekar, Tandon H, Sandhya S, Sowdhamini R, Srinivasan N.  2025.  The alteration of structural network upon transient association between proteins studied using graph theory.. Proteins. 93(1):217-225.
Prabantu VManjveekar, Tandon H, Sandhya S, Sowdhamini R, Srinivasan N.  2025.  The alteration of structural network upon transient association between proteins studied using graph theory.. Proteins. 93(1):217-225.
Prabantu VManjveekar, Tandon H, Sandhya S, Sowdhamini R, Srinivasan N.  2025.  The alteration of structural network upon transient association between proteins studied using graph theory.. Proteins. 93(1):217-225.
Nandwani N, Surana P, Udgaonkar JB, Das R, Gosavi S.  2017.  Amino-acid composition after loop deletion drives domain swapping.. Protein Sci. 26(10)
Parveen S, Singh SPal, Panicker MM, Gupta PKumar.  2019.  Amniotic membrane as novel scaffold for human iPSC-derived cardiomyogenesis.. In Vitro Cell Dev Biol Anim.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Rheinbay E, Nielsen MMuhlig, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RIstrup, Lin Z et al..  2020.  Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.. Nature. 578(7793):102-111.
Hao N, Agnew D, Krishna S, Dodd IB, Shearwin KE.  2021.  Analysis of Infection Time Courses Shows CII Levels Determine the Frequency of Lysogeny in Phage 186.. Pharmaceuticals (Basel). 14(10)
Jhaveri R, Cannanbilla L, Bhat KSArpitha, Sankaran M, Krishnadas M.  2024.  Anatomical traits explain drought response of seedlings from wet tropical forests.. Ecol Evol. 14(9):e70155.
Rajarajan S, Snijesh VP, Anupama CE, Nair MG, Mavatkar AD, Naidu CM, Patil S, Nimbalkar VP, Alexander A, Pillai M et al..  2023.  An androgen receptor regulated gene score is associated with epithelial to mesenchymal transition features in triple negative breast cancers.. Transl Oncol. 37:101761.
Rajarajan S, Snijesh VP, Anupama CE, Nair MG, Mavatkar AD, Naidu CM, Patil S, Nimbalkar VP, Alexander A, Pillai M et al..  2023.  An androgen receptor regulated gene score is associated with epithelial to mesenchymal transition features in triple negative breast cancers.. Transl Oncol. 37:101761.
Sane M, Miranda JJohn, Agashe D.  2018.  Antagonistic pleiotropy for carbon use is rare in new mutations.. Evolution.
Singh A, Hulsmeier J, Kandi AReddy, Pothapragada SShruti, Hillebrand J, Petrauskas A, Agrawal K, Rt K, Thiagarajan D, Jayaprakashappa D et al..  2021.  Antagonistic roles for Ataxin-2 structured and disordered domains in RNP condensation.. Elife. 10
Juma M, Sankaradoss A, Ndombi R, Mwaura P, Damoda T, Nazir J, Pandit A, Khurana R, Masika M, Chirchir R et al..  2021.  Antimicrobial Resistance Profiling and Phylogenetic Analysis of Neisseria gonorrhoeae Clinical Isolates From Kenya in a Resource-Limited Setting. Front. Microbiol.
Juma M, Sankaradoss A, Ndombi R, Mwaura P, Damoda T, Nazir J, Pandit A, Khurana R, Masika M, Chirchir R et al..  2021.  Antimicrobial Resistance Profiling and Phylogenetic Analysis of Neisseria gonorrhoeae Clinical Isolates From Kenya in a Resource-Limited Setting. Front. Microbiol.
Chandrasegaran K, Sriramamurthy R, Singh A, Ravichandran P, Quader S.  2020.  Antipredatory Responses of Mosquito Pupae to Non-Lethal Predation Threat-Behavioral Plasticity Across Life-History Stages.. Environ Entomol.
Chandrasegaran K, Sriramamurthy R, Singh A, Ravichandran P, Quader S.  2020.  Antipredatory Responses of Mosquito Pupae to Non-Lethal Predation Threat-Behavioral Plasticity Across Life-History Stages.. Environ Entomol.
Wigley BJ, Coetsee C, Kruger LM, Ratnam J, Sankaran M.  2019.  Ants, fire, and bark traits affect how African savanna trees recover following damage. BIOTROPICA.

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