Journal Article
Trivedi D, Cm V, Bisht K, Janardan V, Pandit A, Basak B, H S, Ramesh N, Raghu P.
2020. A genome engineering resource to uncover principles of cellular organization and tissue architecture by lipid signalling.. Elife. 9
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.
2016. Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..
2015. Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.
2015. The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.
Srinivasan R, Walvekar AS, Rashida Z, Seshasayee A, Laxman S.
2020. Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program. PLoS Genet. 16(12):e1009252.
Upadhyay AKumar, Sowdhamini R.
2019. Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: .. Bioinform Biol Insights. 13:1177932218821362.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.
2016. Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Panda S, Anandan A, K Shafi M, Naika MBN, Sowdhamini R, Vanishree G, Sarkar S, Travis AJ, Norton GJ, Price AH.
2024. Genome-wide association study reveals effect of nsSNPs on candidate genes in rice during iron deficiency.. Funct Integr Genomics. 24(6):198.
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.
2016. Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Chib S, Ali F, Seshasayee ASai Narain.
2017. Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.. mSphere. 2(3)
Upadhyay AKumar, Sowdhamini R.
2016. Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Bhattacharyya T, Sowdhamini R.
2019. Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.. Evol Bioinform Online. 15:1176934319840289.
Verma S, Sowdhamini R.
2022. A genome-wide search of Toll/Interleukin-1 receptor (TIR) domain-containing adapter molecule (TICAM) and their evolutionary divergence from other TIR domain containing proteins.. Biol Direct. 17(1):24.
Tyagi A., Khan A., Thatte P., Ramakrishnan U..
2022. Genome-wide SNP markers from fecal samples reveal anthropogenic impacts on connectivity: case of a small carnivore in the central Indian landscape. ANIMAL CONSERVATION .
Rao RM, Pasha SNaseer, Sowdhamini R.
2016. Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Ghosh P, Sowdhamini R.
2016. Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Iyer MS, Joshi AG, Sowdhamini R.
2018. Genome-wide survey of remote homologues for protein domain superfamilies of known structure reveals unequal distribution across structural classes.. Mol Omics.
Bhattacharyya T, Sowdhamini R.
2021. Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes. Cell Signal. (110009)
Zaarour RFaouzi, Sharda M, Azakir B, Venkatesh GHassan, Khouzam RAbou, Rifath A, Nizami ZNausheen, Abdullah F, Mohammad F, Karaali H et al..
2022. Genomic Analysis of Waterpipe Smoke-Induced Lung Tumor Autophagy and Plasticity.. Int J Mol Sci. 23(12)
Hsu JL, Crawford JChase, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA.
2017. Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption.. Sci Rep. 7(1):16227.
Khan A, Patel K, Shukla H, Viswanathan A, van der Valk T, Borthakur U, Nigam P, Zachariah A, Jhala YV, Kardos M et al..
2021. Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers.. Proc Natl Acad Sci U S A. 118(49)
Bangalore MPrakash, Adhikarla S, Mukherjee O, Panicker MM.
2017. Genotoxic Effects of Culture Media on Human Pluripotent Stem Cells.. Sci Rep. 7:42222.
Gupta P, Vishnudas CK, Ramakrishnan U, Robin VV, Dharmarajan G.
2019. Geographical and host species barriers differentially affect generalist and specialist parasite community structure in a tropical sky-island archipelago.. Proc Biol Sci. 286(1904):20190439.
Kitnya N, Prabhudev MV, Bhatta CPrasad, Pham THong, Nidup T, Megu K, Chakravorty J, Brockmann A, Otis GW.
2020. Geographical distribution of the giant honey bee Smith, 1871 (Hymenoptera, Apidae).. Zookeys. 951:67-81.
Kurzthaler C, Mandal S, Bhattacharjee T, Löwen H, Datta SS, Stone HA.
2021. A geometric criterion for the optimal spreading of active polymers in porous media.. Nat Commun. 12(1):7088.
Raju A, Siggia ED.
2024. A geometrical model of cell fate specification in the mouse blastocyst.. Development. 151(8)
Raju A, Siggia ED.
2023. A geometrical perspective on development.. Dev Growth Differ.
Rand DA, Raju A, Sáez M, Corson F, Siggia ED.
2021. Geometry of gene regulatory dynamics.. Proc Natl Acad Sci U S A. 118(38)
Marathe K, Maddison WP, Kunte K.
2024. Ghatippuspaschima, a new species and genus of plexippine jumping spider from the Western Ghats of India (Salticidae, Plexippini, Plexippina).. Zookeys. 1191:89-103.
Sitaraman S, Yadav G, Agarwal V, Jabeen S, Verma S, Jadhav M, Thirumalai V.
2021. Gjd2b-mediated gap junctions promote glutamatergic synapse formation and dendritic elaboration in Purkinje neurons.. Elife. 10
Dhingra S, Sowdhamini R, Cadet F, Offmann B.
2020. A glance into the evolution of template-free protein structure prediction methodologies.. Biochimie. 175:85-92.
Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.
2017. Glassy swirls of active dumbbells.. Phys Rev E. 96(4-1):042605.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.
2016. Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Gupta T, Kumar A, Cattenoz PB, VijayRaghavan K, Giangrande A.
2016. The Glide/Gcm fate determinant controls initiation of collective cell migration by regulating Frazzled.. Elife. 5
Badrinarayanan A, Le TBK, Spille J-H, Cisse II, Laub MT.
2017. Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB.. PLoS Genet. 13(5):e1006783.
Hoban S, Bruford MW, W Funk C, Galbusera P, M Griffith P, Grueber CE, Heuertz M, Hunter ME, Hvilsom C, Stroil BKalamujic et al..
2021. Global Commitments to Conserving and Monitoring Genetic Diversity Are Now Necessary and Feasible.. Bioscience. 71(9):964-976.
Samhita L, Raval PK, Agashe D.
2020. Global mistranslation increases cell survival under stress in Escherichia coli.. PLoS Genet. 16(3):e1008654.
Kawahara AY, Storer C, Carvalho APaula S, Plotkin DM, Condamine FL, Braga MP, Ellis EA, St Laurent RA, Li X, Barve V et al..
2023. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins.. Nat Ecol Evol.
Pal A, Iyer MS, Srinivasan S, Seshasayee ASai Narain, Venkatesh KV.
2022. Global pleiotropic effects in adaptively evolved lacking CRP reveal molecular mechanisms that define the growth physiology.. Open Biol. 12(2):210206.
Vilizzi L, Copp GH, Hill JE, Adamovich B, Aislabie L, Akin D, Al-Faisal AJ, Almeida D, Azmai MNAmal, Bakiu R et al..
2021. A global-scale screening of non-native aquatic organisms to identify potentially invasive species under current and future climate conditions.. Sci Total Environ. 788:147868.
Chodankar A, Sadanandappa MK, VijayRaghavan K, Ramaswami M.
2020. GLOMERULUS-SELECTIVE REGULATION OF A CRITICAL PERIOD FOR INTERNEURON PLASTICITY IN THE ANTENNAL LOBE.. J Neurosci.
Yadav A, Vagne Q, Sens P, Iyengar G, Rao M.
2022. Glycan processing in the Golgi: optimal information coding and constraints on cisternal number and enzyme specificity.. Elife. 11
Kumari N, Bandyopadhyay D, Kumar V, Venkatesh DB, Prasad S, Prakash S, Krishnaswamy PR, Balaram P, Bhat N.
2021. Glycation of Albumin and its Implication in Diabetes: A Comprehensive Analysis using Mass Spectrometry.. Clin Chim Acta.
Neelamraju S, Wales DJ, Gosavi S.
2019. Go-Kit: A Tool To Enable Energy Landscape Exploration of Proteins.. J Chem Inf Model.
Jaiman A, Thattai M.
2020. Golgi compartments enable controlled biomolecular assembly using promiscuous enzymes.. Elife. 9
Saha S, Anilkumar AAmbika, Mayor S.
2016. GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
Narayan A, Campos LA, Bhatia S, Fushman D, Naganathan AN.
2017. Graded Structural Polymorphism in a Bacterial Thermosensor Protein.. J Am Chem Soc. 139(2):792-802.
Agarwal I, Thackeray T, Pal S, Khandekar A.
2020. Granite boulders act as deep-time climate refugia: A Miocene divergent clade of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Mysore Plateau, India, with descriptions of three new species. JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH.
Pothukuchi P, Agliarulo I, Pirozzi M, Rizzo R, Russo D, Turacchio G, Nuechel J, Yang J-S, Gehin C, Capolupo L et al..
2021. GRASP55 regulates intra-Golgi localization of glycosylation enzymes to control glycosphingolipid biosynthesis. EMBO JOURNAL. :e107766.
Wigley BJ, Augustine DJ, Coetsee C, Ratnam J, Sankaran M.
2020. Grasses continue to trump trees at soil carbon sequestration following herbivore exclusion in a semi-arid African savanna.. Ecology. :e03008.
Rastogi S., Chanchani P., Sankaran M., Warrier R..
2021. Grasslands half-full: investigating drivers of spatial heterogeneity in ungulate occurrence in Indian Terai. JOURNAL OF ZOOLOGY .
Kohli M, Mijiddorj TNadia, Suryawanshi KRamesh, Mishra C, Boldgiv B, Sankaran M.
2020. Grazing and climate change have site-dependent interactive effects on vegetation in Asian montane rangelands. JOURNAL OF APPLIED ECOLOGY.
Varudkar A, Ramakrishnan U.
2018. Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in .. Ecol Evol. 8(13):6463-6472.
Attiwilli S, Karmakar T, Isvaran K, Kunte K.
2021. Habitat preference and functional traits influence responses of tropical butterflies to varied habitat disturbance. INTERNATIONAL JOURNAL OF TROPICAL INSECT SCIENCE.
Hariharan P, Bangal P, Sridhar H, Shanker K.
2022. Habitat use by mixed-species bird flocks in tropical forests of the Western Ghats, India. JOURNAL OF TROPICAL ECOLOGY .
Young AM, Kodabalagi S, Brockmann A, Dyer FC.
2021. A hard day's night: Patterns in the diurnal and nocturnal foraging behavior of Apis dorsata across lunar cycles and seasons.. PLoS One. 16(10):e0258604.
Tanaka S, Matsushita Y, Hanaki Y, Higaki T, Kamamoto N, Matsushita K, Higashiyama T, Fujimoto K, Ueda M.
2024. HD-ZIP IV genes are essential for embryo initial cell polarization and the radial axis formation in Arabidopsis.. Curr Biol.
Dinesh AS, Mathur V, Ansil BR, Chandru V, Chellam R, Vanak ATamim, Ramakrishnan U, Rajagopal P.
2020. Health Heatmap of India: An Open Data Platform.. J Indian Inst Sci. :1-16.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.
2018. Heard but not seen: Comparing bat assemblages and study methods in a mosaic landscape in the Western Ghats of India.. Ecol Evol. 8(8):3883-3894.
Sen S, VijayRaghavan K.
2019. Heinrich Reichert (1949-2019).. Development. 146(16)
Mohapatra PP, Agarwal I, Mohalik RKumar, Dutta SK, Khandekar A.
2023. Hemidactylus paucifasciatus (Squamata: Gekkonidae), a new species of large-bodied, tuberculate gecko from Northern Odisha, India. ZOOTAXA . 5301(3):365-382.
Bhatia S, Udgaonkar JB.
2022. Heterogeneity in Protein Folding and Unfolding Reactions.. Chem Rev.
Sachdeva K, Goel M, Sundaramurthy V.
2020. Heterogeneity in the endocytic capacity of individual macrophage in a population determines its subsequent phagocytosis, infectivity and subcellular trafficking.. Traffic. 21(8):522-533.
Dua N, Badrinarayanan A.
2024. Heteroplasmy in action: tracking mtDNA segregation dynamics.. EMBO J.
Amarasinghe AAT, Karunarathna S, Campbell PD, Gayan AKA, Ranasinghe WDB, De Silva A, Mirza ZA.
2022. The hidden diversity and inland radiation of Sri Lanka's ground-dwelling geckos of the genus Cyrtodactylus (Reptilia: Gekkonidae). SYSTEMATICS AND BIODIVERSITY . 20(1):1-25.
Dorazio RM, K Karanth U.
2017. A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders.. PLoS One. 12(5):e0176966.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.
2017. Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Jha U, Kondrychyn I, Korzh V, Thirumalai V.
2021. High behavioral variability mediated by altered neuronal excitability in mutant zebrafish.. eNeuro.
Nair AG, Castro LRV, Khoury MEl, Gorgievski V, Giros B, Tzavara ET, Hellgren-Kotaleski J, Vincent P.
2019. The high efficacy of muscarinic M4 receptor in D1 medium spiny neurons reverses striatal hyperdopaminergia.. Neuropharmacology. 146:74-83.
Sagar V, Kaelin CB, Natesh M, P Reddy A, Mohapatra RK, Chhattani H, Thatte P, Vaidyanathan S, Biswas S, Bhatt S et al..
2021. High frequency of an otherwise rare phenotype in a small and isolated tiger population.. Proc Natl Acad Sci U S A. 118(39)
Ansil BR, Mendenhall IH, Ramakrishnan U.
2021. High prevalence and diversity of Bartonella in small mammals from the biodiverse Western Ghats.. PLoS Negl Trop Dis. 15(3):e0009178.
Tamma K, Ramakrishnan U.
2015. Higher speciation and lower extinction rates influence mammal diversity gradients in Asia.. BMC Evol Biol. 15:11.
Naik T, Sharda M, P LC, Virbhadra K, Pandit A.
2023. High-quality single amplicon sequencing method for illumina MiSeq platform using pool of 'N' (0-10) spacer-linked target specific primers without PhiX spike-in.. BMC Genomics. 24(1):141.
Agarwal I, Khandekar A, Giri VB, Ramakrishnan U, Karanth P.
2019. The hills are alive with geckos! A radiation of a dozen species on sky islands across peninsular India (Squamata: Gekkonidae, Hemiphyllodactylus) with the description of three new species. Organisms Diversity & Evolution. 19(2):341–361.
Bhalla US.
2021. HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks.. PLoS Comput Biol. 17(11):e1009621.
Madan JS, Gupta K, Chattarji S, Bhattacharya A.
2018. Hippocampal and amygdalar cell-specific translation is similar soon after stress but diverge over time.. Hippocampus.
Varghese PC, Rajam SM, Nandy D, Jory A, Mukherjee A, Dutta D.
2021. Histone chaperone APLF level dictate implantation of mouse embryo. J Cell Sci. 134(1)
Saha S, Raghupathy R, Mayor S.
2015. Homo-FRET imaging highlights the nanoscale organization of cell surface molecules.. Methods Mol Biol. 1251:151-73.
Somasundaram S, Véry A-A, Vinekar RS, Ishikawa T, Kumari K, Pulipati S, Kumaresan K, Corratgé-Faillie C, Sowdhamini R, Parida A et al..
2020. Homology modeling identifies crucial amino-acid residues that confer higher Na+ transport capacity of OcHKT1;5 from Oryza coarctata Roxb.. Plant Cell Physiol.
Singh AS, Shah A, Brockmann A.
2018. Honey bee foraging induces upregulation of early growth response protein 1, hormone receptor 38 and candidate downstream genes of the ecdysteroid signalling pathway.. Insect Mol Biol. 27(1):90-98.
Chatterjee A, George EA, V PM, Basu P, Brockmann A.
2019. Honey bees flexibly use two navigational memories when updating dance distance information.. J Exp Biol. 222(Pt 11)
Sundaramurthy V, Haldar J.
2024. Honoring a Legacy: "Vigyan Ratna" Prof. G. Padmanaban.. ACS Infect Dis.
Deb R, Nair A, Agashe D.
2019. Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies.. PeerJ. 7:e8058.
Nair A, Agashe D.
2016. Host-specific, spatial and temporal variation in culturable gut bacterial communities of dragonflies. Current Science. 110(8):1513-1523.
Malhotra P, Udgaonkar JB.
2016. How cooperative are protein folding and unfolding transitions? Protein Sci.
Chandrasegaran K, Juliano SA.
2019. How Do Trait-Mediated Non-lethal Effects of Predation Affect Population-Level Performance of Mosquitoes? Front Ecol Evol. 7
Brockmann A.
2023. How India Changed My Ideas About Honey Bees. JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE .
Aylward M, Sagar V, Natesh M, Ramakrishnan U.
2022. How methodological changes have influenced our understanding of population structure in threatened species: insights from tiger populations across India.. Philos Trans R Soc Lond B Biol Sci. 377(1852):20200418.
Willemen L, Barger NN, Brink Bten, Cantele M, Erasmus BFN, Fisher JL, Gardner T, Holland TG, Kohler F, Kotiaho JS et al..
2020. How to halt the global decline of lands. NATURE SUSTAINABILITY.
Mukherjee S, Murata A, Ishida R, Sugai A, Dohno C, Hamada M, Krishna S, Nakatani K.
2022. HT-SELEX-based identification of binding pre-miRNA hairpin-motif for small molecules.. Mol Ther Nucleic Acids. 27:165-174.
Thatte P, Chandramouli A, Tyagi A, Patel K, Baro B, Chhattani H, Ramakrishnan U.
2019. Human footprint differentially impacts genetic connectivity of four wide‐ranging mammals in a fragmented landscape. Diversity and Distribution.
Thatte P, Chandramouli A, Tyagi A, Patel K, Baro P, Chhattani H, Ramakrishnan U.
2020. Human footprint differentially impacts genetic connectivity of four wide-ranging mammals in a fragmented landscape. DIVERSITY AND DISTRIBUTIONS. 26(3):299-314.
Akhtar BM, Bhatia P, Acharya S, Sharma S, Sharma Y, Aswathy BS, Ganapathy K, Vasudevan A, Raghu P.
2022. A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe Syndrome.. Biol Open.
Kamdar A, Baishya HKumar, Nagendra H, Ratnam J, Smith D, Sekar N.
2022. Human–elephant conflict mitigation as a public good: what determines fence maintenance? Ecology and Society. 27(3)
Ramachandran R, Kumar A, Sundar KSGopi, Bhalla RSingh.
2017. Hunting or habitat? Drivers of waterbird abundance and community structure in agricultural wetlands of southern India. Ambio.
Sarkar SS, Trivedi DV, Morck MM, Adhikari AS, Pasha SN, Ruppel KM, Spudich JA.
2020. The hypertrophic cardiomyopathy mutations R403Q and R663H increase the number of myosin heads available to interact with actin.. Sci Adv. 6(14):eaax0069.
Chaturvedi D, Reichert H, Gunage RD, VijayRaghavan K.
2017. Identification and functional characterization of muscle satellite cells in Drosophila.. Elife. 6
Nadella RK, Chellappa A, Subramaniam AG, More RPrabhakar, Shetty S, Prakash S, Ratna N, Vandana VP, Purushottam M, Saini J et al..
2019. Identification and functional characterization of two novel mutations in KCNJ10 and PI4KB in SeSAME syndrome without electrolyte imbalance.. Hum Genomics. 13(1):53.