A complete listing is at the lab website.

Selected publications

  1. J. Nde*, K. Majila*, et al, Multicomplex Integrative Structural Modeling of a Human Histone Deacetylase Interactome, biorxiv (2026). 
  2. K. Majila, O. Golatkar, S. Viswanath, Integrative Modeling with AlphaFold, Current Opinion in Structural Biology, (2026). 
  3. K. Majila, V. Ullanat, S. Viswanath, Disobind: a sequence-based, partner-dependent contact map and interface residue predictor for intrinsically disordered regions, Cell Systems, (2026). 
  4. S. Arvindekar, K. Majila, S. Viswanath, Recent methods from statistical inference and machine learning to improve integrative modeling of macromolecular assemblies, Machine Learning, Big Data and Artificial Intelligence, Springer Handbook of Chem and Bioinformatics (2026). 
  5. A. Zalevsky et al,  IHMValidation: Assessment of integrative structures deposited to the Protein Data Bank, JMB Special Issue on Computational Resources (2025). 
  6. S. Arvindekar, O. Golatkar, S. Viswanath, PickET: An unsupervised method for localizing macromolecules in cryo-electron tomograms, biorxiv (2025). 
  7. Y. Zhang, M. Jindal,  S. Viswanath, M. Sitharam, A new discrete-geometry approach for integrative docking of proteins using chemical crosslinks, JCIM (2025). 
  8. S. Rathore et al, Multiscale simulations reveal architecture of NOTCH protein and ligand specific features, Biophysical Journal (2025).
  9. K. Majila, S. Arvindekar, M. Jindal, S. Viswanath, Frontiers in integrative structural modeling of macromolecular assemblies, QRB Discovery (2025). 
  10. S. Pasani, K.S. Menon, S. Viswanath, The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling, Protein Science (2024). Cover image on Protein Science!
  11. S. Viswanath, Alphafold opens the doors to deorphanizing proteins, Cell Systems (2024).
  12. X. Liu et al,  An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome, PNAS (2024).
  13. S. Arvindekar, A.S. Pathak, K. Majila, S. Viswanath, Optimizing representations for integrative structural modeling using Bayesian model selection, Bioinformatics (2024). 
  14. S. Arvindekar, M. J. Jackman, J.K.K. Low, M.J. Landsberg, J.P. Mackay, S.Viswanath, Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination, Protein Science (2022).  Cover image on Protein Science!

  15. V. Ullanat, N. Kasukurthi and S. Viswanath, PrISM: precision for integrative structural models, Bioinformatics (2022). Now used by the PDB!