A complete listing is at the lab website.

Selected publications

  1. S. Arvindekar, A.S. Pathak, K. Majila, S. Viswanath, Optimizing representations for integrative structural modeling using Bayesian model selection, Bioinformatics (2024). 
  2. S. Arvindekar, M. J. Jackman, J.K.K. Low, M.J. Landsberg, J.P. Mackay, S.Viswanath, Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination, Protein Science (2022).  Cover image on Protein Science!

  3. V. Ullanat, N. Kasukurthi and S. Viswanath, PrISM: precision for integrative structural models, Bioinformatics (2022). 

  4. S. Pasani and S. Viswanath, A Framework for Stochastic Optimization of Parameters for Integrative Modeling of Macromolecular Assemblies, Life (Spl Issue on Computational Modeling of Kinetics in Biological Systems), 11(11), 1183 (2021). 
  5. A. Brilot, A.S. Lyon, A. Zelter, S. Viswanath, A. Maxwell, R. Johnson, K.C. Yabut, M. MacCoss, E. Muller, A. Sali, T.N. Davis, D. A. Agard, CM1-driven assembly and activation of Yeast γ-Tubulin Small Complex underlies microtubule nucleation, eLife, 10, e65168 (2021).  
  6. D. Saltzberg, S. Viswanath, I. Echeverria, I.E. Chemmama, B. Webb, A. Sali, Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure. Protein Science, 30(1), 250-261 (2021).
  7. S. Viswanath and A. Sali, Optimizing model representation for integrative structure determination of macromolecular assemblies, Proceedings of the National Academy of Sciences, 116 (2), 540-545 (2019).
  8. D. Saltzberg, C.H. Greenberg, S. Viswanath, I.E. Chemmama, B. Webb, R. Pellarin, I. Echeverria, A. Sali, Modeling biological complexes using Integrative Modeling Platform, Biomolecular Simulations Series, Methods in Molecular Biology, 2022, 353-377 (2019).
  9. B. Webb, S. Viswanath, M. Bonomi, R. Pellarin, C.H. Greenberg, D. Saltzberg, A. Sali, Integrative structure modeling with the Integrative Modeling Platform, Protein Science, 27 (1), 245-258 (2018).
  10. S. Viswanath, I.E. Chemmama, P. Cimermancic, A. Sali. Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures, Biophysical Journal, 113, 2344-2353 (2017).
  11. S. Viswanath, M. Bonomi, S.J. Kim, V.A. Klenchin, K.C. Taylor, K.C. Yabut, N.T. Umbreit, H.A. Van Epps, J. Meehl, M.H. Jones, D. Russel, J.A. Velazquez-Muriel, M. Winey, I. Rayment, T.N. Davis, A. Sali, E.G. Muller, The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling. Molecular Biology of the Cell, 28 (23), 3298-3314 (2017).