2010

1. Aguilar, P. S., Heiman, M. G. Walther, T. C., Engel, A., Schwudke, D., Gushwa, N. Kurzchalia, T., Walter, P. (2010) Structure of sterol aliphatic chains affects yeast cell shape and cell fusion during mating. Proceedings of the National Academy of Scienecs of  USA,  Vol 107(9) PP. 4170-4175.  

2.  Anbazhagan, P.,  Purushottam, M. Kumar, H.B.K. Mukherjee, O., Jain, S.
Sowdhamini, R. (2010) Phylogenetic analysis and selection pressures of 5-HT receptors in human and non-human primates: Receptor of an ancient neurotransmitter Journal of Biomolecular Structure and Dynamics, Vol 27(5) PP. 581-598.

3. Bharath, Srikala Purushottam, Meera Mukherjee, Odity  Bagepally, Bhavani Shankara;  Om Prakash;Kota, Lakshminarayanan; Krishnappa, Palanimuthu, Srinivas Brahmadevarahalli Sivakumar, Thangaraju; Jain, Sanjeev Varghese, Mathew (2010) Apolipoprotein E Polymorphism and Dementia: A Hospital-Based Study from Southern India. Dementia and Geriatric Cognitive Disorders Vol.30, P455-460

4. Butchart, S.H. M. Walpole, M., Collen, B., Van Strien, A. Scharlemann, J. P.W. Quader, S. (2010) Global biodiversity: Indicators of recent declines.  Science, Vol. 328(5982) PP. 1164-1168.

5. Carvaljo,M., Schwudke, D., Sampaio, J.L., Palm, W., Riezman, I., Dey, D., Gupta, g.D., Mayor,S., Riezman,H., Shevechenko,A., Kurzchalia, T.V. and Eaton, S. (2010) Survival strategies of a sterol auxotroph Development, Vol.137, p3675-3685

6. Chakraborty, S. Ramakrishnan, U. et all (2010) Genetic Polymorphism in the Serotonin Transporter Promoter Region and Ecological Success in Macaques. Behavior genetics  Vol 40(5)  PP. 672-679

7.  Das, A., Reichert, H. Rodrigues, V. (2010) Notch regulates the generation of diverse cell types from the lateral lineage of Drosophila antennal lobe. Journal of Neurogenet,  Vol 24(1) PP. 52-53

8. Dasgupta A. and Udgaonkar, J.B. (2010) Evidence for initial non-specific polypeptide chain collapse during the refolding of the SH3 domain of PI3 kinase.  Journal of Molecular Biology, Vol.403, p430-445

9. Dhawale, K. A., Bhalla, U. S. et all (2010) Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nature Neuroscience, Vol 13(7) PP.1404-1412

10. Djurfeldt, M., Hjorth, J., Eppler, J. M., Dudani, N., Helias, M., Potjans, T.C., Bhalla, U.S. Diesmann, M. Kotaleski, J.H. Ekeberg, O. (2010) Run-time interoperability between neuronal network simulators based on the MUSIC framework. Neuroinformatics,  Vol 8(1) PP. 43-60

11. Dutta, D., Umashankar,M., Lewis, E. B., Rodrigues, V., VijayRaghavan, K. (2010)  Hox genes regulate muscle founder cell- pattern autonomously and regulate morphogenesis through motor neurons. Journal of Neurogenetics,  Vol 24(3) PP. 95-108.

12. Gleeson, P., Crook, S., Cannon, R., Hines, M., Billings, G.O. Farinella, M., Morse, T.M., Davison, A. P., Ray, S., Bhalla, U. S., Barnes, S. R. Dimitrova, Y. D. Angus., Silver, A., Neuro, M. L. (2010) A language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS Computational Biology,  Vol 6(6) PP. 1-19.

13. Hasan, G. Venkiteswaran, G. (2010) The Enigma of Store-Operated Ca2+-Entry in Neurons: Answers from the Drosophila Flight Circuit. Frontiers in neural circuits,  Vol 4(10)  PP. 1-4

14. Higgins, S. I., Scheiter, S., Sankaran, M. (2010) The stability of African savannas: Insights from the indirect estimation of the parameters of a dynamic model. Ecology, Vol 91(6) PP. 1682-1692.

15. Hoffmann, M., Hilton-Taylor, C., Angulo, A., Böhm, M., Brooks, T.M., Butchart, S.H.M., Quader, S. et al. (2010)  The impact of conservation on the status of the world's vertebrates. Science, Vol.330, No.6010, P1503

16. Howes, M., Kirkham, M., Riches, J., Cortese, K., Walser, P.J., Simpson, F., Hill, M.M., Jones, A., Lundmark, R., Lindsay, Hernandez-Deviez, D. J., Hadzic, G., McCluskey, A.  Bashir, R., Liu, L., Pilch, P.,  McMahon, H., Robinson, P. J.,  Hancock, J.F. Mayor, S. and Parton, R.G. (2010) Clathrin-independent carriers form a high capacity endocytic sorting system at the leading edge of migrating cells. Journal of Cell Biology, Vol.190, No.4, p675

17. Howes, M., Mayor, S. and Parton, R. (2010) Molecules, mechanisms, and cellular roles of clathrin-independent endocytosis. Current Opinion in Cell Biology, Vol.22, No.4, P519

18. Iyengar, A., Siddiqi, O. et all (2010) Post-eclosion odor experience modifies olfactory receptor neuron coding in Drosophila. Procd. Of National Academy of Science USA,  Vol 107(21)  PP. 9855-9860

19. Jain, S. and Udgaonkar, J.B (2010)  Salt-induced modulation of the pathway of amyloid fibril formation by the mouse prion protein.  Biochemistry, Vol.49, No.35, P7615-7624

20. Jayshree, R. S. Krishna, S. et al (2010) Cell Intrinsic and Extrinsic Factors in Cervical Carcinogenesis. Indian Journal of Med Research,  Vol 130 PP.286-295

21. Jha, S.K. and Udgaonkar, J.B. (2010)  Energy barriers in protein folding and unfolding. Current Science, vol.99, No.4, P457

22. Johannes, L and Mayor, S. (2010)  Induced domain formation in endocytic invagination, lipid sorting and scission. Cell, Vol.142, No.2, PP507-510

23. Kain, P., Badsha, F., Hussain S. M., Nair, A., Hasan, G.,Rodrigues, V. (2010) Mutants in phospholipid signaling attenuate the behavioural response of adult Drosophila to trehalose. Chemical Senses, Vol 35(8) PP. 663-673.

24. Khan, Adil Ghani Parthasarathy, K. Bhalla, S. U. (2010) Odor representations in the mammalian olfactory bulb. Systems Biology and Medicine,  Vol 2(5) PP. 1-9

25.  Khurana, S., Abu Baker, M. B. Siddiqi, O. (2010) Odour avoidance learning in the larva of Drosophila melanogaster. Journal of Bioscience, Vol 34(4) PP. 621-631

26.  Koshy, C., Marimuthu, M. Sowdhamini, R. (2010) 100ns Molecular dynamics simulations to study intramolecular conformational changes in Bax. Journal of Biomolecular Structure and Dynamics,  Vol 28(1) PP. 71-83.

27. Krishnamurthy, H. and Cram, S.L. (2010) Basics of flow cytometry in the applications of flow cytometry in stem cell research and tissue Eds: A. Krishan, H. Krishnamurthy and S. Totey,  Chapter 1, pg 1-12. Wiley-Blackwell, USA. ISBN-13: 978-0-470-54398-6.

28. Kumar J., Choudhary B. C., Metpally R., Zheng Q., Nonet, M. L., Sowdhamini, R., Klopfenstein D. and Koushika, S. P. (2010) The C. elegans kinesin-3 motor UNC-104/K1F1A is degraded upon loss of specific binding to cargo. PLOS Genetics, Vol.6,100120

29. Kumar, S., Udgaonkar, J. B. (2010) Mechanisms of amyloid fibril formation by proteins. Current Science, Vol 98(5) PP.1053-1070.

30. Kumari, S. Swetha, M. G., Mayor, S. (2010) Endocytosis unplugged: multiple ways to enter the cell. Cell research, Vol 20(3)  PP. 256-275

31. Maiti, M., Rao, M. And Sastry,S. (2010) Competition between folding and aggregation in a model for protein solutions. European Physical Journal, E32,P217-221

32. Mayor, S. (2010) ASCB 50th Anniversary Essy, Serendipity and Cell Biology. Molecular Biology of The Cell, Vol 21(3) PP. 3807-3808

33. Menon, I., Spudich, A. (2010) The Ashtavaidya physicians of Kerala: A tradition in transition. Journal of Ayurveda and Integratince Medicine, Vol 1(4) PP.245-250

34. Modi, S., Krishnan, Y., et all (2010) Structural DNA Nanotechnology: From Bases to Bricks, From Structure to Function. The Journal of Physical Chemistry Letters, Vol 1(13) PP. 1994-2005

35. Mondol, S., Ramakrishnan, U. et all (2010) A panel of microsatellites to individually identify leopards and its application to leopard monitoring in human dominated landscapes. BMC Genetics, Vol 10(79)  PP. 1-7

36. Moustakas, A., Wiegand, K., Meyer, K. M., Ward, D. and Sankaran, M. (2010) Learning new tricks from old trees: revisiting the savanna question. Frontiers of Biogeography, Vol.2, No.2, pp47

37.  Muhuri.S. and Rao, M. (2010) Sequence dependent elasticity and local stiffness of a DNA heteropolymer. Journal of Statistical Mechanics, PO2005

38. Mukherjee, S, Krishnan, A, Tamma, K, Home, C, Navya R, Joseph, S and Ramakrishnan, U. (2010) Ecology driving genetic variation: A comparative phylogeography of Indian populations of jungle cat (Felis chaus) and leopard cat (Prionailurus bengalensis). PLOS One, Vol.5,e13724

39. Mukherjee, S., Ashalakshmi, C. N,,  Home, C. and Ramakrishnan, U (2010) An evaluation of the PCR-RFLP technique to aid molecular-based monitoring of felids and canids in India. BMC Research Notes, Vol.3, P159

40. Murthy, K., Bhat, J. M. and Koushika, S.P. (2010) In vivo imaging of retrogradely transported synaptic vesicle proteins in C. elegans neurons. Traffic, Vol.12, p89-101

41. Mysore, K., Shyamala, B. V. Rodrigues, V. (2010) Morphological and developmental analysis of peripheral antennal chemosensory sensilla and central olfactory glomeruli in worker castes of Camponotus compressus (Fabricius, 1787). Arthropod Structure and Development  Vol 39(5) PP. 310-321

42. Namadurai, S., Jain, D., Kulkarni, D. S., Tabib, C. R., Friedhoff, P., Rao, D. N. and Nair,D.T. (2010) The C-terminal domain of the MutL homolog from Neisseria gonorrhoeae forms an inverted homodimer.  PLOS One, Vol.5, N10,e13726

43. Narayanan R.,  Chattarji, S. (2010)  Computational Analysis of the Impact of Chronic Stress on Intrinsic and Synaptic Excitability in the Hippocampus. Journal of Neurophysiology,  Vol 103(6) PP. 3070-3083

44. Neha, Agrawal, Hasan G. et al (2010) Inositol 1,4,5-Trisphosphate Receptor and dstim Function in Drosophila Insulin-Producing Neurons Regulates Systemic Intracellular Calcium Homeostasis and Flight. Journal of Neuroscience,  Vol 30(4) PP. 1301-1313

45. Pandurangan, S., Shameer, K.,   Sreenivasan, R.,  Gakkhar, S. and Sowdhamini, R. (2010) A bioinformatics protocol for the identification of spatial clusters and the calculation of higher order residue interactions in protein structures. Nature Protocols Network

46. Patel, S., Kumar, S., Jyoti, A., Srinag, B.S., Keshari, R.S., Saluja, R., Verma, A., Mitra, K., Barthwal, M.K., Krishnamurthy, H., Bajpai, V.K. and Dikshit, M. (2010) Nitric oxide donors release extracellular traps from human neutrophils by augmenting free radical generation. Nitric Oxide, Vol.22, No.3, PP226-234

47. Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV. (2010)  Maradolipids: Diacyltrehalose Glycolipids Specific to Dauer Larva in Caenorhabditis elegans. Angew Chem Int Ed Engl.,  vol.49, PP9430-9435

48. Perumalsamy, L. R., Nagala, M., Sarin, A. (2010) A Notch activated signaling cascade interacts with mitochondrial remodeling proteins to regulate cell survival. Proceedings of the National Academy of Science of USA. Vol 107(12) PP. 6882-6887.

49. Pugalenthi, G.,  Kandaswamy, K.K.,  Suganthan, P.N., Sowdhamini, r.,  Martinetz, T. and   Kolatkar, P. (2010) SMpred: A support vector machine approach to identify structural motifs in protein structure without using evolutionary information.  Journal of Biomolecular Structure and Dynamics, vol.28, No.3, PP405-414

50. Pugalenthi, P. Kandaswamy, K.K. Suganthan, P. N. Archunan, G. Sowdhamini, R. (2010) Identification of functionally diverse lipocalin proteins from sequence information using support vector machine. Amino Acids,  Vol 39(3) PP. 777-783

51. Rajkumar, R., Prakash, S., Archunan, G. Sowdhamini, R. (2010) Primary structural documentation of the major urinary protein of the Indian Commensal Rat (Rattus rattus) using a proteomics platform. Protein and Peptide Letters, Vol 14(7) PP. 449-457

52.  Ramadas, R.,  Thattai, M. (2010) Flipping DNA to Generate and Regulate Microbial Consortia. Genetics, Vol 184(1)  PP. 285-293

53. Reddy, C.C., Rani, S.S., Offmann, B. And Sowdhamini, R. (2010) Systematic search for putative new domain families in Mycoplasma gallisepticum genome. BMC Research Notes, Vol.3, P98

54. Robin, V.V., Sinha, A. and Ramakrishnan, U. (2010) Ancient geographical gaps and paleo-climate shape the phylogeography of an endemic bird in the sky islands of Southern India. PLSO One, Vol.5, e13321

55. Saha, S., Bhatia, D., Krishnan, Y. (2010) Ph-Toggled DNA architectures: reversible assembly of three-way junctions into extended 1D architectures through A-motif formation. Small, Vol 6(12)  PP. 1288-1292

56.  Sane, S. P. Srygley, R. B. Dudley, R. (2010) Antennal regulation of migratory flight in the neotropical moth Urania fulgens. Biology Letters,  Vol 6(3) PP. 406–409. | PMID 

57. Sen, S., Rodrigues, V. et all (2010) Expression and function of the empty spiracles gene in olfactory sense organ development of Drosophila melanogaster. Development, Vol 137(21) PP. 3687-3695

58. Sengupta, S., Bhattacharya, J. And Rao, M. (2010) Jamming-un-jamming and space-time trajectory transitions in early time solid-solid nucleation. J. Phys. Condens. Matter,Vol.23, 295402

59. Shameer, K.,   Madhan, L.L.,  Veeranna, S., Balasubramanian, G.  and  Sowdhamini, R. (2010) A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes. BMC Bioinformatics, Vol.11, 473

60. Shameer, K.,  Pugalenthi, G.,  Kandaswamy, K.K.,  Suganthan, P.N.,  Archunan, G. and Sowdhamini, R. (2010) Insights into protein sequence and structure-derived features mediating 3D domain swapping mechanism using support vector machine based approach. Bioinformatics and Biology Insights, Vol.4,PP33-42

61. Sharma, S., Bhatia, D.,  Krishnan, Y. (2010) Transforming Bases to Bytes: Molecular Compuling With DNA. Current Trends in Science, PP. 1-7

62. Shukla, S., Bharti, A.C., Mahata, S., Hussain, S., Hedau, S., Sharma, R., Pillai, M.R., Krishna, S., Chiplunkar, S., Tengaonkar, H. and Das, B.C. (2010) Application of a multiplex PCR to cervical cells collected by a paper smear for the simultaneous detection of all mucosal human papillomaviruses and typing of HR HPV types 16 and 18. Journal of Medical Microbiology, Vol.59, No.11,PP1303-1310

63. Singh I, Faruq, M., Mukherjee, O., Jain, S., Pal, P.K., Srivastav, M.V., Behari, M., Srivastava, A.K. and Mukerji. M. (2010) North and South Indian populations share a common ancestral origin of Friedreich's ataxia but vary in age of GAA repeat expansion.  Ann Hum Genet. Vol.74, No.3, PP202-10.

64. Singh, A. P. Vijayraghavan, K. Rodrigues, V. (2010) Dendritic refinement of an identified neuron in the Drosophila CNS is regulated by neuronal activity and Wnt signaling. Development, Vol 137(8)  PP. 1351-1360

65. Singh, P. A. Rodrigues, V. Vijayraghavan, K. (2010), Action Reorganization in Nerve Morophogenesis  Encyclopedia of Life sciences March 2010 PP.1-14

66. Srinag, B.S.,  Kalappurakkal, J.M.,  Mohan, G.H. and  Krishnamurthy, H. (2010) Flow cytometric sorting of spermatogonial stem cells in the applications of flow cytometry in stem cell research and tissue regeneration. Eds: A. Krishan, H. Krishnaamurthy and S. Totey Chapter 16, pg 241-250. Wiley-Blackwell, USA. ISBN-13: 978-0-470-54398-6

67.  Srinivasan, U., Raza, R., Quader, S. (2010)  The nuclear question: Rethinking species importance in multi-species animal groups. Journal of Animal Ecology, Vol 79(5) PP. 948-954

68. Srivastava, S., Krishna, S. et al (2010) Notch1 regulates the functional contribution of rhoc to cervical carcinoma progression. British Journal of Cancer,  Vol 102(1) PP. 196-205

69. Sundaramurthy P. Sowdhamini, R. (2010) HORI: A web server to compute Higher Order Residue Interactions in protein structures. BMC Bioinformatics, Vol 11(suppl 1) PP. s24.

70. Suvrathan, A. Chattarji, S. et all (2010) Characterization and reversal of synaptic defects in the amygdala in a mouse model of fragile X syndrome.  Procd. Of National Academy of Science USA, Vol 107(25) PP. 11591-11596

71. Suvrathan, A.,  Tomar, A.,  Chattarji, S. (2010) Effects of chronic and acute stress on rat behaviour in the forced-swim test. Stress, Vol 13(6) PP. 533-540

72. Zhao, L., Huang, Q., Deng, X., Sane, S. P. (2010) Aerodynamic effects of flexibility in flapping wings. Journal of The Royal Society Interface,  Vol 7(44) PP.485-497

73. Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK. (2010) DNA synthesis across an abasic lesion by yeast REV1 DNA polymerase. J Mol Biol. 406(1):18-28.| PMID

74. Namadurai S, Jain D, Kulkarni DS, Tabib CR, Friedhoff P, Rao DN, Nair DT. (2010) The C-terminal domain of the MutL homolog from Neisseria gonorrhoeae forms an inverted homodimer. PLoS One. 5(10):e13726. | PMID

75. Lieberman DE, Venkadesan M, Werbel WA, Daoud AI, D'Andrea S, Davis IS, Mang'eni RO, Pitsiladis Y. (2010) Foot strike patterns and collision forces in habitually barefoot versus shod runners. Nature. 463(7280):531-5. | PMID

76. Zhao L, Huang Q, Deng X* and Sane, S.P.* (2010) Aerodynamic effects of flexibility in flapping wings. Journal of The Royal Society Interface 7: 485-497 | PMID

77. Usman H, Kumari S &  Mathew  MK (2010) Tumor suppressor candidate KCNRG regulates surface expression of Shaker type potassium channels Biochem Biophys Res. Commun  391, 1301–1305 | PMID

78. V.S. Gowri, Khader Shameer, Chilamakuri Chandra Sekhar Reddy, Prashant Shingate & Ramanathan Sowdhamini (2010).A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families. Proceedings of 2010 IEEE International Conference on Data Mining Workshops (ICDMW 2010) ISBN: 978-0-7695-4257-7

79. Georgiev, P., Okkenhaug, H, Drews, A, Wright, D., Flick, M, Lambert, S, Oberwinkler, J and Raghu, P (2010). TRPM channels mediate zinc homeostasis and cellular growth during Drosophila larval development. Cell Metabolism. 12, 386–397