Ghosh P, Sowdhamini R. 2017. Bioinformatics comparisons of RNA-binding proteins of pathogenic and non-pathogenic Escherichia coli strains reveal novel virulence factors.. BMC Genomics. 18(1):658.
K Shafi M, Joshi AG, Meenakshi I, Pasha SNaseer, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al.. 2020. Dataset for the combined transcriptome assembly of and functional annotation.. Data Brief. 30:105416.
Ghosh P, Joshi A, Guita N, Offmann B, Sowdhamini R. 2019. EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins.. BMC Genomics. 20(1):403.
Naika MBN, Sathyanarayanan N, Sajeevan RSivarajan, Bhattacharyya T, Ghosh P, Iyer MS, Jarjapu M, Joshi AG, Harini K, K Shafi M et al.. 2022. Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).. Sci Rep. 12(1):13534.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al.. 2015. Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Ghosh P, Sowdhamini R. 2016. Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Joshi AG, Harini K, Meenakshi I, K Shafi M, Pasha SNaseer, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al.. 2020. A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.. MethodsX. 7:101053.
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R. 2016. PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Ghosh P, Bhattacharyya T, Mathew OK, Sowdhamini R. 2019. PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.. Database (Oxford). 2019
Ghosh P, Mathew OK, Sowdhamini R. 2016. RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.. BMC Bioinformatics. 17(1):411.
Ghosh P, Grellscheid SNagaraja, Sowdhamini R. 2016. A tale of two paralogs: human Transformer2 proteins with differential RNA-binding affinities.. J Biomol Struct Dyn. 34(9):1979-86.
Pasha SNaseer, K Shafi M, Joshi AG, Meenakshi I, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al.. 2020. The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).. Genomics. 112(1):621-628.