Author Title Type [ Year(Desc)]
Filters: Author is Srinivasan, Narayanaswamy  [Clear All Filters]
2015
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJinan, Craik DJ, Finn RD, Gloriam D, Haft DH et al..  2015.  Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.. Database (Oxford). 2015:bav063.
Ramakrishnan G, Ochoa-Montaño B, Raghavender US, Mudgal R, Joshi AG, Chandra NR, Sowdhamini R, Blundell TL, Srinivasan N.  2015.  Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: insights into structure and function.. Tuberculosis (Edinb). 95(1):14-25.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N et al..  2015.  Key challenges for the creation and maintenance of specialist protein resources.. Proteins. 83(6):1005-13.
Mudgal R, Sandhya S, Kumar G, Sowdhamini R, Chandra NR, Srinivasan N.  2015.  NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.. Nucleic Acids Res. 43(Database issue):D300-5.
Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-Montaño B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL et al..  2015.  SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.. Database (Oxford). 2015:bav060.
2016
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.  2016.  Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Rakesh R, Joseph APraveen, Bhaskara RM, Srinivasan N.  2016.  Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.. RNA Biol. 13(10):1025-1040.
Joseph AP, Swapna LS, Rakesh R, Srinivasan N.  2016.  Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting.. J Struct Biol.
2017
Vishwanath S, Sukhwal A, Sowdhamini R, Srinivasan N.  2017.  Specificity and stability of transient protein-protein interactions.. Curr Opin Struct Biol. 44:77-86.
2019
Naveenkumar N, Kumar G, Sowdhamini R, Srinivasan N, Vishwanath S.  2019.  Fold combinations in multi-domain proteins.. Bioinformation. 15(5):342-350.
Jayashree S, Murugavel P, Sowdhamini R, Srinivasan N.  2019.  Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.. Biol Direct. 14(1):1.
Naveenkumar N, Sowdhamini R, Srinivasan N.  2019.  Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family.. FEBS Open Bio.
2020
Aghera NK, Prabha J, Tandon H, Chattopadhyay G, Vishwanath S, Srinivasan N, Varadarajan R.  2020.  Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase.. Structure. 28(5):562-572.e4.
2021
Prabantu VManjveekar, Naveenkumar N, Srinivasan N.  2021.  Influence of Disease-Causing Mutations on Protein Structural Networks.. Front Mol Biosci. 7:620554.
2022
Bheemireddy S, Sandhya S, Srinivasan N, Sowdhamini R.  2022.  Computational tools to study RNA-protein complexes.. Front Mol Biosci. 9:954926.
Kalmankar NV, Pavalam M, Indrakumar S, Srinivasan N, Sowdhamini R.  2022.  DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.. Database (Oxford). 2022
Naveenkumar N, Prabantu VManjveekar, Vishwanath S, Sowdhamini R, Srinivasan N.  2022.  Structures of distantly-related interacting protein homologues are less divergent than non-interacting homologues.. FEBS Open Bio.
2024
Parvathy J, Yazhini A, Srinivasan N, Sowdhamini R.  2024.  Interfacial residues in protein-protein complexes are in the eyes of the beholder.. Proteins.
Subhadarshini S, Tandon H, Srinivasan N, Sowdhamini R.  2024.  Normal Mode Analysis Elicits Conformational Shifts in Proteins at Both Proximal and Distal Regions to the Phosphosite Stemming from Single-Site Phosphorylation.. ACS Omega. 9(23):24520-24537.
2025
Prabantu VManjveekar, Tandon H, Sandhya S, Sowdhamini R, Srinivasan N.  2025.  The alteration of structural network upon transient association between proteins studied using graph theory.. Proteins. 93(1):217-225.
Sidhanta SPrakash Da, Sowdhamini R, Srinivasan N.  2025.  Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins.. Proteins. 93(1):197-208.
Bheemireddy S, Sowdhamini R, Srinivasan N.  2025.  Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly.. PLoS One. 20(1):e0317187.