Author Title [ Type] Year
Filters: Author is Udgaonkar, Jayant B [Clear All Filters]
Nandwani N, Surana P, Udgaonkar JB, Das R, Gosavi S. 2017. Amino-acid composition after loop deletion drives domain swapping.. Protein Sci. 26(10)
Sen S, Udgaonkar JB. 2019. Binding-induced folding under unfolding conditions: Switching between induced fit and conformational selection mechanisms.. J Biol Chem. 294(45):16942-16952.
Malhotra P, Jethva PN, Udgaonkar JB. 2017. Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding.. Biochemistry. 56(31):4053-4063.
Bhate SH, Udgaonkar JB, Das R. 2021. Destabilization of polar interactions in the prion protein triggers misfolding and oligomerization.. Protein Sci.
Bhattacharjee R, Udgaonkar JB. 2022. Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein.. Protein Sci. :e4513.
Sen S, Goluguri RReddy, Udgaonkar JB. 2017. A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Nussinov R, Udgaonkar JB. 2016. Editorial overview: Folding and binding: Dynamic conformational heterogeneity is pivotal to cell life.. Curr Opin Struct Biol. 36:iv-vi.
Kumar H, Udgaonkar JB. 2022. Elongation of Fibrils Formed by a Tau Fragment is Inhibited by a Transient Dimeric Intermediate.. J Phys Chem B.
Pal S., Udgaonkar JB. 2022. Evolutionarily conserved proline residues impede the misfolding of the mouse prion protein by destabilizing an aggregation-competent partially unfolded form . J Mol Biol..
Sengupta I, Udgaonkar JB. 2017. Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Nandwani N, Surana P, Negi H, Mascarenhas NM, Udgaonkar JB, Das R, Gosavi S. 2019. A five-residue motif for the design of domain swapping in proteins.. Nat Commun. 10(1):452.
Milán-Garcés EA, Thaore P, Udgaonkar JB, Puranik M. 2015. Formation of a CH-π contact in the core of native barstar during folding.. J Phys Chem B. 119(7):2928-32.
Sabareesan AThody, Udgaonkar JB. 2017. The G126V Mutation in the Mouse Prion Protein Hinders Nucleation-Dependent Fibril Formation by Slowing Initial Fibril Growth and by Increasing the Critical Concentration.. Biochemistry. 56(44):5931-5942.
Bhatia S, Udgaonkar JB. 2022. Heterogeneity in Protein Folding and Unfolding Reactions.. Chem Rev.
Malhotra P, Udgaonkar JB. 2016. How cooperative are protein folding and unfolding transitions? Protein Sci.
Moulick R, Udgaonkar JB. 2017. Identification and structural characterization of the precursor conformation of the prion protein which directly initiates misfolding and oligomerization.. J Mol Biol.
Udgaonkar JB. 2019. Introducing the Mechanical Forces in Biochemistry Special Issue.. Biochemistry. 58(47):4655-4656.
Kumar H, Udgaonkar JB. 2021. The Lys 280 ➔ Gln mutation mimicking disease-linked acetylation of Lys 280 in tau extends the structural core of fibrils and modulates their catalytic properties.. Protein Sci.
Bhatia S, Krishnamoorthy G, Udgaonkar JB. 2021. Mapping Distinct Sequences of Structure Formation Differentiating Multiple Folding Pathways of a Small Protein.. J Am Chem Soc.
Sabareesan AThody, Mathew MK, Udgaonkar JB. 2018. Mechanism of aggregation and membrane interactions of mammalian prion protein.. Biochim Biophys Acta.
Kumar H, Udgaonkar JB. 2018. Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Kumar H, Udgaonkar JB. 2019. Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Sen S, Kumar H, Udgaonkar JB. 2021. Microsecond dynamics during the binding-induced folding of an intrinsically disordered protein.. J Mol Biol. :167254.
Goluguri RReddy, Udgaonkar JB. 2016. Microsecond rearrangements of hydrophobic clusters in an initially collapsed globule prime structure formation during the folding of a small protein.. J Mol Biol.
Jethva PN, Udgaonkar JB. 2017. Modulation of the Extent of Cooperative Structural Change During Protein Folding by Chemical Denaturant.. J Phys Chem B. 121(35):8263-8275.
Kumar H, Singh J, Kumari P, Udgaonkar JB. 2017. Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G. 2016. Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. METHODS AND APPLICATIONS IN FLUORESCENCE. 4(1)
Singh J, Udgaonkar JB. 2015. Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Malhotra P, Udgaonkar JB. 2022. Native State Hydrogen Exchange-Mass Spectrometry Methods to Probe Protein Folding and Unfolding.. Methods Mol Biol. 2376:143-159.
Bhatia S, Krishnamoorthy G, Dhar D, Udgaonkar JB. 2019. Observation of Continuous Contraction and a Metastable Misfolded State during the Collapse and Folding of a Small Protein.. J Mol Biol.
Jethva PN, Udgaonkar JB. 2018. The Osmolyte TMAO Modulates Protein Folding Cooperativity by Altering Global Protein Stability.. Biochemistry.
Moulick R, Das R, Udgaonkar JB. 2015. Partially Unfolded Forms of the Prion Protein Populated under Misfolding-promoting Conditions: CHARACTERIZATION BY HYDROGEN EXCHANGE MASS SPECTROMETRY AND NMR.. J Biol Chem. 290(42):25227-40.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK. 2016. The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Singh J, Udgaonkar JB. 2016. The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Sabareesan AT, Udgaonkar JB. 2016. Pathogenic mutations within the disordered palindromic region of the prion protein induce structure therein and accelerate the formation of misfolded oligomers.. J Mol Biol.
Bhatia S, Krishnamoorthy G, Udgaonkar JB. 2021. Resolving Site-Specific Heterogeneity of the Unfolded State under Folding Conditions.. J Phys Chem Lett. :3295-3302.
Goluguri RReddy, Udgaonkar JB. 2015. Rise of the Helix from a Collapsed Globule during the Folding of Monellin.. Biochemistry. 54(34):5356-65.
Moulick R, Goluguri RReddy, Udgaonkar JB. 2019. Ruggedness in the Free Energy Landscape Dictates Misfolding of the Prion Protein.. J Mol Biol.
Sengupta I, Bhate SH, Das R, Udgaonkar JB. 2017. Salt-mediated oligomerization of the mouse prion protein monitored by real time NMR.. J Mol Biol.
Malhotra P, Udgaonkar JB. 2016. Secondary Structural Change Can Occur Diffusely and Not Modularly during Protein Folding and Unfolding Reactions.. J Am Chem Soc. 138(18):5866-78.
Bhatia S, Krishnamoorthy G, Udgaonkar JB. 2018. Site-specific time-resolved FRET reveals local variations in the unfolding mechanism in an apparently two-state protein unfolding transition.. Phys Chem Chem Phys. 20(5):3216-3232.
Aghera N, Udgaonkar JB. 2017. Stepwise Assembly of β-Sheet Structure during the Folding of an SH3 Domain Revealed by a Pulsed Hydrogen Exchange Mass Spectrometry Study.. Biochemistry.
Bhattacharjee R, Udgaonkar JB. 2021. Structural Characterization of the Cooperativity of Unfolding of a Heterodimeric Protein Using Hydrogen Exchange-Mass Spectrometry.. J Mol Biol. :167268.
Singh J, Udgaonkar JB. 2015. Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Sengupta I, Udgaonkar JB. 2018. Structural mechanisms of oligomer and amyloid fibril formation by the prion protein.. Chem Commun (Camb).
Malhotra P, Udgaonkar JB. 2015. Tuning Cooperativity on the Free Energy Landscape of Protein Folding.. Biochemistry. 54(22):3431-41.
Singh J, Udgaonkar JB. 2016. Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Mehra S, Ahlawat S, Kumar H, Datta D, Navalkar A, Singh N, Patel K, Gadhe L, Kadu P, Kumar R et al.. 2022. α-Synuclein aggregation intermediates form fibril polymorphs with distinct prion-like properties.. J Mol Biol. :167761.