Author Title Type [ Year(Desc)]
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2024
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, Bertrand-Michel J, Brügger B, Cala MP et al..  2024.  Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.. Nat Commun. 15(1):8562.
Adamala KP, Agashe D, Belkaid Y, Bittencourt DMatias de, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM et al..  2024.  Confronting risks of mirror life.. Science. 386(6728):1351-1353.
Adamala KP, Agashe D, Belkaid Y, Bittencourt DMatias de, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM et al..  2024.  Confronting risks of mirror life.. Science. 386(6728):1351-1353.
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Hussain N, Apotikar A, Pidathala S, Mukherjee S, Burada AP, Sikdar SK, Vinothkumar KR, Penmatsa A.  2024.  Cryo-EM structures of pannexin 1 and 3 reveal differences among pannexin isoforms.. Nat Commun. 15:2942.
Sreepadmanabh M, Arun AB, Bhattacharjee T.  2024.  Design approaches for 3D cell culture and 3D bioprinting platforms.. Biophys Rev (Melville). 5(2):021304.
Agrawal K, Prabhakar S, Bakthavachalu B, Chaturvedi D.  2024.  Distinct developmental patterns in Anopheles stephensi organ systems.. Dev Biol. 508:107-122.
Sanjenbam P, Agashe D.  2024.  Divergence and convergence in epiphytic and endophytic phyllosphere bacterial communities of rice landraces.. mSphere. :e0076524.
Kaur K, Chandel M, Munikrishnappa VKT, Kumar P, Sahu BK, Ahamed M, Manjunath S, Gorantla M, Olsson S, Muthusamy E et al..  2024.  Ecofriendly agriculture pest control using pheromone packed programed nanovolcanoes framed by graphene oxide. CLEAN TECHNOLOGIES AND ENVIRONMENTAL POLICY.
Maes S.L, Perring M.P, Cohen R., Akinnifesi F.K, Bargues-Tobella A., Bastin J.-f., Bauters M., Bernardino P.N, Brancalion P.HS, Bullock J.M et al..  2024.  Explore before you restore: Incorporating complex systems thinking in ecosystem restoration. JOURNAL OF APPLIED ECOLOGY .
Gupta D, Sane SP, Arakeri JH.  2024.  Generating controlled gust perturbations using vortex rings.. PLoS One. 19(7):e0305084.
Mishra S., Manohar V., Chandel S., Manoj T., Bhattacharya S., Hegde N., Nath V.R., Krishnan H., Wendling C., Mattia T.D. et al..  2024.  A genetic screen to uncover mechanisms underlying lipid transfer protein function at membrane contact sites . Life Sci Alliance. 7(6):e202302525.
Panda S, Anandan A, K Shafi M, Naika MBN, Sowdhamini R, Vanishree G, Sarkar S, Travis AJ, Norton GJ, Price AH.  2024.  Genome-wide association study reveals effect of nsSNPs on candidate genes in rice during iron deficiency.. Funct Integr Genomics. 24(6):198.
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y et al..  2024.  An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome.. Proc Natl Acad Sci U S A. 121(33):e2318601121.
Lu H, Twan WKyaw, Ikawa Y, Khare V, Mukherjee I, Schou KBødtker, Chua KXin, Aqasha A, Chakrabarti S, Hamada H et al..  2024.  Localisation and function of key axonemal microtubule inner proteins and dynein docking complex members reveal extensive diversity among vertebrate motile cilia.. Development. 151(14)
Srivastava V, Patra K, Pai H, Aguilar-Pontes MVictoria, Berasategui A, Kamble A, Di Pietro A, Redkar A.  2024.  Molecular Dialogue During Host Manipulation by the Vascular Wilt Fungus .. Annu Rev Phytopathol. 62(1):97-126.
Singh N, Kaushik R, Prakash A, Saini SSingh, Garg S, Adhikary A, Ladher RK.  2024.  Mosaic Atoh1 deletion in the chick auditory epithelium reveals a homeostatic mechanism to restore hair cell number.. Dev Biol. 516:35-46.
Garushyants SK, Sane M, Selifanova MV, Agashe D, Bazykin GA, Gelfand MS.  2024.  Mutational signatures in wild type Escherichia coli strains reveal predominance of DNA polymerase errors.. Genome Biol Evol.
Arvindekar S, Pathak AS, Majila K, Viswanath S.  2024.  Optimizing representations for integrative structural modeling using Bayesian model selection.. Bioinformatics. 40(3)
Gowda A, C ST, Anil VS, Raghavan S.  2024.  Phytosynthesis of silver nanoparticles using aqueous sandalwood (Santalum album L.) leaf extract: Divergent effects of SW-AgNPs on proliferating plant and cancer cells.. PLoS One. 19(4):e0300115.
G Vivek Hari Sundar, Madhu A, Archana A, Shivaprasad PV.  2024.  Plant histone variants at the nexus of chromatin readouts, stress and development.. Biochim Biophys Acta Gen Subj. 1868(2):130539.
Chaurasia R, Ayajuddin M, Ratnaparkhi GS, Lingadahalli SS, Yenisetti SC.  2024.  A Simple Immunofluorescence Method to Characterize Neurodegeneration and Tyrosine Hydroxylase Reduction in Whole Brain of a Model of Parkinson's Disease.. Bio Protoc. 14(4):e4937.
Mohanakrishnan V, Sivaraj KK, Jeong H-W, Bovay E, Dharmalingam B, M Bixel G, Dinh VVuong, Petkova M, Ugarte IParedes, Kuo Y-T et al..  2024.  Specialized post-arterial capillaries facilitate adult bone remodelling.. Nat Cell Biol.
Petrauskas A., Fortunati DL, Kandi AR, Pothapragada SS, Agrawal K., Singh A., Huelsmeier J., Hillebrand J., Brown G., Chaturvedi D. et al..  2024.  Structured and disordered regions of Ataxin-2 contribute differently to the specificity and efficiency of mRNP granule formation. PLoS Genetics. 20(20):e1011251.
Petrauskas A., Fortunati DL, Kandi AR, Pothapragada SS, Agrawal K., Singh A., Huelsmeier J., Hillebrand J., Brown G., Chaturvedi D. et al..  2024.  Structured and disordered regions of Ataxin-2 contribute differently to the specificity and efficiency of mRNP granule formation. PLoS Genetics. 20(20):e1011251.
Mukherjee AKishore, Dutta S, Singh A, Sharma S, Roy SShekhar, Sengupta A, Chatterjee M, Vinayagamurthy S, Bagri S, Khanna D et al..  2024.  Telomere length sensitive regulation of interleukin receptor 1 type 1 (IL1R1) by the shelterin protein TRF2 modulates immune signalling in the tumour microenvironment.. Elife. 13
Adhikari S, Singh V, Nandi S, Ghosal M, Raj NSundar, Khanna J, Bhattacharya A, Kabiraj A, Mondal A, Vasudevan M et al..  2024.  UBR7 in concert with EZH2 inhibits the TGF-β signaling leading to extracellular matrix remodeling.. Cell Rep. 43(7):114394.
Armstrong EE, Mooney JA, Solari KA, Kim BY, Barsh GS, Grant VB, Greenbaum G, Kaelin CB, Panchenko K, Pickrell JK et al..  2024.  Unraveling the genomic diversity and admixture history of captive tigers in the United States.. Proc Natl Acad Sci U S A. 121(39):e2402924121.
2025
R. Rao Y, Sankaran M, Jathanna D, Andheria A.  2025.  Assessing ungulate response to conservation-oriented village relocations and their associated management practices in a tiger reserve in central India.
Han X, Anthon C, Geissler ASven, Sabarinathan R, Seemann SErnst, Havgaard JHull, Gorodkin J.  2025.  Associating cancer-related RNA structure disrupting SNPs in LincRNAs to function.. BMC Genomics. 26(1):1100.
Beaurepaire AL, Hogendoorn K, Kleijn D, Otis GW, Potts SG, Singer TL, Boff S, Pirk C, Settele J, Paxton RJ et al..  2025.  Avenues towards reconciling wild and managed bee proponents.. Trends Ecol Evol. 40(1):7-10.
Anujan K, Shabnam A, Ali I, Gummadi AKumar, Sankaran M, Krishnadas M, Naeem S.  2025.  Biodiversity effects on seedling growth are modified by light environment across functional groups.. Ecol Appl. 35(5):e70087.
Anujan K, Shabnam A, Ali I, Gummadi AKumar, Sankaran M, Krishnadas M, Naeem S.  2025.  Biodiversity effects on seedling growth are modified by light environment across functional groups.. Ecol Appl. 35(5):e70087.
Agarwal P.  2025.  Caenorhabditis elegans germline flux pulls its stem-cell niche cells into shape.. J Biosci. 50
Landschaft-Berliner D, Goldstein K, Teichman G, Anava S, Gingold H, Salzberg Y, Rieger I, Levy N, Pechuk V, Setty H et al..  2025.  Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.. Nat Neurosci.
Landschaft-Berliner D, Goldstein K, Teichman G, Anava S, Gingold H, Salzberg Y, Rieger I, Levy N, Pechuk V, Setty H et al..  2025.  Cold and lithium delay forgetting of olfactory memories in Caenorhabditis elegans.. Nat Neurosci.
Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK et al..  2025.  Cryo-EM structures of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in the apo state and in the presence of small molecules..
D'Andrea R, Barabás G, Dalrymple SE, Foden W, Genovesi P, Krishnadas M, Leibold MA, McPeek MA, Moehrenschlager A, Rodriguez JPaul et al..  2025.  Ecological Risk-Benefit Analysis for Assisted Colonization.. Glob Chang Biol. 31(11):e70613.
Solari KA, Morgan S, Poyarkov AD, Weckworth B, Samelius G, Sharma K, Ostrowski S, Ramakrishnan U, Kubanychbekov Z, Kachel S et al..  2025.  Exceedingly low genetic diversity in snow leopards due to persistently small population size.. Proc Natl Acad Sci U S A. 122(41):e2502584122.
Solari KA, Morgan S, Poyarkov AD, Weckworth B, Samelius G, Sharma K, Ostrowski S, Ramakrishnan U, Kubanychbekov Z, Kachel S et al..  2025.  Exceedingly low genetic diversity in snow leopards due to persistently small population size.. Proc Natl Acad Sci U S A. 122(41):e2502584122.
Kumar VRavi, Buddh S, Singhal S, Prakash A, Agashe D.  2025.  Founders predict trait evolution and population performance after evolutionary rescue in the red flour beetle.. Proc Natl Acad Sci U S A. 122(36):e2506244122.
Goswami S', Mukherjee S, Ahmed N', Sreepadmanabh M', Bhattacharjee T', Bhat R', Saini D', Ghosh A'.  2025.  Frequency-Chirped Actuation of Chiral Magnetic Microbots for Viscosity Mapping in Heterogenous Media: From Model Fluids to Living Cells.. ACS Nano. 19(41)
Ahmad M, Rathee S, Krishnadas M.  2025.  From low to high elevations, flowers adapt traits and phenology to climate, but phenology-trait relationships weak. Functional Ecology. :1-14.
Majila K, Arvindekar S, Jindal M, Viswanath S.  2025.  Frontiers in integrative structural modeling of macromolecular assemblies. QRB Discovery. 6:e3.
Sahu S', Baid N', Aggarwal D', Sharma A', Gun M', Molla S', Sinha A', Dwivedi A.P', Tuli A', Sharma M' et al..  2025.  Fundamental role of spatial positioning of Mycobacterium tuberculosis in mycobacterial survival in macrophages.. Nature Communications.
Abbondanzieri EA, Badrinarayanan AB, Barillà D, Bell SD, Blombach F, Bouet JY, Bulgheresi S, Cao QAD, Dame RT, Dekker C et al..  2025.  Future Directions of the Prokaryotic Chromosome Field.. Mol Microbiol. 123(2):89-100.
Medina I, Exnerová A, Daňková K, Penacchio O, Sherratt TN, Albrecht T, Baidya S, Bosque RJanke, Brown H, Burdfield-Steel E et al..  2025.  Global selection on insect antipredator coloration.. Science. 389(6767):1336-1341.
Medina I, Exnerová A, Daňková K, Penacchio O, Sherratt TN, Albrecht T, Baidya S, Bosque RJanke, Brown H, Burdfield-Steel E et al..  2025.  Global selection on insect antipredator coloration.. Science. 389(6767):1336-1341.
Ansil BR, Viswanathan A, Ramachandran V, Yeshwanth HM, Sanyal A, Ramakrishnan U.  2025.  Host-Pathogen-Vector Continuum in a Changing Landscape: Potential Transmission Pathways for in a Small Mammal Community.. Ecol Evol. 15(4):e71085.
Agrawal R, Pal VKumar, S SK, Menon GJayan, Singh IRaj, Malhotra N, S NC, Ganesh K, Rajmani RS, Seshasayee ASai Narain et al..  2025.  Hydrogen sulfide (H2S) coordinates redox balance, carbon metabolism, and mitochondrial bioenergetics to suppress SARS-CoV-2 infection.. PLoS Pathog. 21(5):e1013164.
Ansil BR, Sanyal A, Sreenivas D, Garg KM, Ramakrishnan U, Chattopadhyay B.  2025.  Identification of Distinct Rodent-Associated Adenovirus Lineages from Mixed-Use Landscape.. Ecohealth.
Iyer A, Alva A, Granada AE, Chakrabarti S.  2025.  Inheritable cell-states shape drug-persister correlations and population dynamics in cancer cells.. PLoS Comput Biol. 21(9):e1013446.
Shrivastava A, Kamma H, Das R, Ainavarapu SRama Koti.  2025.  Ionic Liquid-Induced Modulation of Ubiquitin Stability: The Dominant Role of Hydrophobic Interactions.. Langmuir. 41(9):5823-5837.
Jahnavi J, Pritha D, V MAshwini, Vijay B, R PGuntupalli, Anjali G, Sandeep P, Navendu P, Ishan A, Kartik S et al..  2025.  Linking eras and data: natural history collections as the foundation of India’s biodiversity science..
Adhikashreni IS, Joseph AMary, Phadke S, Badrinarayanan A.  2025.  Live tracking of replisomes reveals nutrient-dependent regulation of replication elongation rates in Caulobacter crescentus.. Curr Biol. 35(8):1816-1827.e3.
Gregori M, Pereira GJS, Allen R, West N, Chau K-Y, Cai X, Bostock MP, Bolsover SR, Keller M, Lee C-Y et al..  2025.  Lysosomal TPC2 channels disrupt Ca2+ entry and dopaminergic function in models of LRRK2-Parkinson's disease.
Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KBharadwaj, Arvind P, Rupanagudi KValli, Maitra A, Nagabandi T et al..  2025.  Mapping genetic diversity with the GenomeIndia project.. Nat Genet. 57(4):767-773.
Agrata R, Das R.  2025.  Monitoring Protein Deamidation in Real Time Using NMR.. Magn Reson Chem.
Krishnan H', Venugopal A', Alex P', Raghu P'.  2025.  The multifaceted phosphatidylinositol 5 phosphate 4-kinase proteins: molecular properties and biological functions.. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids. 1871(1)
Rathore S, Gahlot D, Castin J, Pandey A, Arvindekar S, Viswanath S, Thukral L.  2025.  Multiscale simulations reveal architecture of NOTCH protein and ligand specific features.. Biophys J. 124(2):393-407.
Sane M, Parveen S, Agashe D.  2025.  Mutation bias alters the distribution of fitness effects of mutations.. PLoS Biology.
Krishnamoorthy VK, Hamdani F, Shukla P, Rao RArasala, Anaitullah S, Biligiri KKestur, Kadumuri RVarma, Pothula PReddy, Chavali S, Rampalli S.  2025.  NSD3 protein methylation and stabilization transforms human ES cells into variant state.. Life Sci Alliance. 8(3)
Zaidel-Bar R, Agarwal P.  2025.  Outside influences: The impact of extracellular matrix mechanics on cell migration.. Curr Top Dev Biol. 164:29-65.
Kaushik R, Pandey S, Prakash A, Ganatra F, Abe T, Kiyonari H, Ladher RK.  2025.  Role of Pcdh15 in the development of intrinsic polarity of inner ear hair cells.. PLoS Genet. 21(8):e1011825.
Borer E, Seabloom E, Slette I, Wilfahrt P, Asmus A, Sankaran M.  2025.  Species cover, community biomass, and richness in global grasslands from NutNet (2007–2023): Dominant species predict plant richness and biomass in global grasslands.
Chakraborty N, Ameta S, Thutupalli S.  2025.  Temperature-Driven Catalytic Switching Enables Sequence-Dependent Amplification of Autocatalytic Ribozymes in Coacervates.. Small. :e07108.
Aniruddh S, Mayank K, Jayashree R, Vasant S, Mahesh S.  2025.  Towards Greener Pastures: An Overview of Pastoral Economics, Policies and Ecologies in India. Economic & Political Weekly.
2026
Arvindekar SM, Golatkar O, Viswanath S.  2026.  BPS2026 – PickET: An unsupervised method for localizing macromolecules in cryo-electron tomograms. Biophysical Journal. 125(4)
Agarwal RGirdhar, Iyer SSuresh, Barbora A, Desai M, Gadgil Y, Jana SChandra, Ray K.  2026.  EB1 surges promote ciliary outer-segment growth through periodic tubulin influxes into the Drosophila olfactory cilia.. J Cell Sci. 139(2)
Vaid P, Puntambekar A, Kanse P, Kadu S, Agrawal P, Khatpe A, Banale R, Reddy R, Kelkar DA, Hannenhalli S et al..  2026.  EGFR and AR expression and co-expression in Indian triple-negative breast cancer with patient outcome association.. Sci Rep.
Joshi S, Pathak A, Regati DReddy, Menon R, Ajith DS, Sheshadri A, Viswanathan N, Ray P, Koul V, Panda P et al..  2026.  GRAYU: graph-based database integrating Ayurvedic formulations, medicinal plants, phytochemicals and diseases. frontiers. 16
Krishnan H, Venugopal A, Alex P, Raghu P.  2026.  The multifaceted phosphatidylinositol 5 phosphate 4-kinase proteins: molecular properties and biological functions.. Biochim Biophys Acta Mol Cell Biol Lipids. 1871(1):159698.
Krishnan A, Nag J, Arun S., Mudappa D, Raman T.RShankar, Sankaran M, Osuri AM.  2026.  Partial recovery of large seed arrival following ecological restoration in fragmented tropical rainforests. Nordic Society Oikos.
Arvindekar S, Majila K, Viswanath S.  2026.  Recent Methods from Statistical Inference for Integrative Structural Modeling. Springer Handbook of Chem- and Bioinformatics . :1075–1103.
Coverdale TC, Sankaran M, Davies AB, Ratnam J, Wigley BJ, Augustine DJ.  2026.  Responses of African Savanna Trees to Large Herbivore Extinction and Rewilding.. Ecol Lett. 29(3):e70360.
Agarwala M, Komanduri KPavan, Quamar MFiroz, Kulkarni C, Ratnam J.  2026.  Restoration goals: Insights from antiquity and dynamics of forest–savanna mosaics in Central India during the Holocene. ResearchGate.
Sujith T.N, Archana A., Anushree N., Shivaprasad P.V.  2026.  Unraveling functions of a novel miRNA-aquaporin module linked to rice domestication. Springer Nature Link. 263
Sujith T.N, Archana A., Anushree N., Shivaprasad P.V.  2026.  Unraveling functions of a novel miRNA-aquaporin module linked to rice domestication. Springer Nature Link. 263

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