2017
Holla H, Sharma A, Bhat P, Shinde D, Das B.
2017. Two new substituted polychiral 5, 6-dihydro-alpha-pyrones from Orthosiphon diffusus and molecular docking studies. PHYTOCHEMISTRY LETTERS. 22:21-26.
Hilgen G, Sorbaro M, Pirmoradian S, Muthmann J-O, Kepiro IEdit, Ullo S, Ramirez CJuarez, Encinas APuente, Maccione A, Berdondini L et al..
2017. Unsupervised Spike Sorting for Large-Scale, High-Density Multielectrode Arrays.. Cell Rep. 18(10):2521-2532.
Hilgen G, Sorbaro M, Pirmoradian S, Muthmann J-O, Kepiro IEdit, Ullo S, Ramirez CJuarez, Encinas APuente, Maccione A, Berdondini L et al..
2017. Unsupervised Spike Sorting for Large-Scale, High-Density Multielectrode Arrays.. Cell Rep. 18(10):2521-2532.
Hilgen G, Sorbaro M, Pirmoradian S, Muthmann J-O, Kepiro IEdit, Ullo S, Ramirez CJuarez, Encinas APuente, Maccione A, Berdondini L et al..
2017. Unsupervised Spike Sorting for Large-Scale, High-Density Multielectrode Arrays.. Cell Rep. 18(10):2521-2532.
2016
Sturm S, Ramesh D, Brockmann A, Neupert S, Predel R.
2016. Agatoxin-like peptides in the neuroendocrine system of the honey bee and other insects.. J Proteomics. 132:77-84.
Khurana TRoy, Sane SP.
2016. Airflow and optic flow mediate antennal positioning in flying honeybees.. Elife. 5
Dhanyalakshmi KH, Naika MBN, Sajeevan RS, Mathew OK, K Shafi M, Sowdhamini R, Nataraja KN.
2016. An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.. PLoS One. 11(3):e0151323.
Dhanyalakshmi KH, Naika MBN, Sajeevan RS, Mathew OK, K Shafi M, Sowdhamini R, Nataraja KN.
2016. An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.. PLoS One. 11(3):e0151323.
Dhanyalakshmi KH, Naika MBN, Sajeevan RS, Mathew OK, K Shafi M, Sowdhamini R, Nataraja KN.
2016. An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.. PLoS One. 11(3):e0151323.
Ghosh S, Yu C-L, Ferraro DJ, Sudha S, Pal SKumar, Schaefer WF, Gibson DT, Ramaswamy S.
2016. Blue protein with red fluorescence.. Proc Natl Acad Sci U S A. 113(41):11513-11518.
Ghosh S, Yu C-L, Ferraro DJ, Sudha S, Pal SKumar, Schaefer WF, Gibson DT, Ramaswamy S.
2016. Blue protein with red fluorescence.. Proc Natl Acad Sci U S A. 113(41):11513-11518.
Sondhi S., Kunte K.
2016. Butterflies (Lepidoptera) of the Kameng Protected Area Complex, western Arunachal Pradesh, India. Journal of Threatened Taxa. 8:9053–9124.
Pranatharthi A., Ross C., Srivastava S.
2016. Cancer Stem Cells and Radioresistance: Rho/ROCK Pathway Plea Attention. Stem Cells Int. (5785786)
Ammothumkandy A, Maliekal TThomas, Bose MVahanan, Rajkumar T, Shirley S, Thejaswini B, Giri VG, Krishna S.
2016. CD66 and CD49f expressing cells are associated with distinct neoplastic phenotypes and progression in human cervical cancer.. Eur J Cancer. 60:166-178.
Sengupta T, Das R, Chattarji S.
2016. Chronic but not acute immobilization stress stably enhances hippocampal CA1 metabotropic glutamate receptor dependent Long-Term Depression.. Neurosci Lett. 633:101-105.
Price BWills, Allan ELouise, Marathe K, Sarkar V, Simon C, Kunte K.
2016. The cicadas (Hemiptera: Cicadidae) of India, Bangladesh, Bhutan, Myanmar, Nepal and Sri Lanka: an annotated provisional catalogue, regional checklist and bibliography.. Biodivers Data J. (4):e8051.
Price BWills, Allan ELouise, Marathe K, Sarkar V, Simon C, Kunte K.
2016. The cicadas (Hemiptera: Cicadidae) of India, Bangladesh, Bhutan, Myanmar, Nepal and Sri Lanka: an annotated provisional catalogue, regional checklist and bibliography.. Biodivers Data J. (4):e8051.
Gowda M., Ambardar S., Dighe N., Manjunath A., Shankaralingu C., Hallappa P., Harting J., Ranade S., Jagannathan L., Krishna S..
2016. Comparative analyses of low, medium and high-resolution HLA typing technologies for human populations. Journal of Clinical & Cellular Immunology. 7
Khedkar S, Seshasayee ASai Narain.
2016. Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology? G3 (Bethesda). 6(6):1597-606.
Patil P, Skariyachan S, Mutt E, Kaushik S.
2016. Computational Analysis of the Domain Architecture and Substrate-Gating Mechanism of Prolyl Oligopeptidases from Shewanella woodyi and Identification of Probable Lead Molecules.. Interdiscip Sci. 8(3):284-93.
Osuri AM, Ratnam J, Varma V, Alvarez-Loayza P, Astaiza JHurtado, Bradford M, Fletcher C, Ndoundou-Hockemba M, Jansen PA, Kenfack D et al..
2016. Contrasting effects of defaunation on aboveground carbon storage across the global tropics.. Nat Commun. 7:11351.
Yasmin F, Saxena K, McEwen BS, Chattarji S.
2016. The delayed strengthening of synaptic connectivity in the amygdala depends on NMDA receptor activation during acute stress.. Physiol Rep. 4(20)
Wang ET, J Taliaferro M, Lee J-A, Sudhakaran IP, Rossoll W, Gross C, Moss KR, Bassell GJ.
2016. Dysregulation of mRNA Localization and Translation in Genetic Disease.. J Neurosci. 36(45):11418-11426.
Varma V, Iyengar SB, Sankaran M.
2016. Effects of nutrient addition and soil drainage on germination of N-fixing and non-N-fixing tropical dry forest tree species . Plant Ecology. 217(1043–1054):1043–1054.
Nayak G, Honguntikar SD, Kalthur SGuruprasad, D'Souza ASylvan, Mutalik S, Setty MM, Kalyankumar R, Krishnamurthy H, Kalthur G, Adiga SKumar.
2016. Ethanolic extract of Moringa oleifera Lam. leaves protect the pre-pubertal spermatogonial cells from cyclophosphamide-induced damage.. J Ethnopharmacol. 182:101-9.
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.
2016. Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.
2016. Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.
2016. Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Upadhyay AKumar, Sowdhamini R.
2016. Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..
2016. A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Rao RM, Pasha SNaseer, Sowdhamini R.
2016. Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Ghosh P, Sowdhamini R.
2016. Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.
2016. Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Saha S, Anilkumar AAmbika, Mayor S.
2016. GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
Karpe SD, Jain R, Brockmann A, Sowdhamini R.
2016. Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera.. Genome Biol Evol. 8(9):2879-2895.
Mahita J, Harini K, Pichika MRao, Sowdhamini R.
2016. An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.. J Biomol Struct Dyn. 34(6):1345-62.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.
2016. Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.
2016. Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Velho N, Srinivasan U, Singh P, Laurance WF.
2016. Large mammal use of protected and community-managed lands in a biodiversity hotspot. ANIMAL CONSERVATION. 19(2):199-208.
Velho N, Srinivasan U, Singh P, Laurance WF.
2016. Large mammal use of protected and community-managed lands in a biodiversity hotspot. ANIMAL CONSERVATION. 19(2):199-208.
Agashe D, Sane M, Phalnikar K, Diwan GD, Habibullah A, Martinez-Gomez NCecilia, Sahasrabuddhe V, Polachek W, Wang J, Chubiz LM et al..
2016. Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.. Mol Biol Evol.
Agashe D, Sane M, Phalnikar K, Diwan GD, Habibullah A, Martinez-Gomez NCecilia, Sahasrabuddhe V, Polachek W, Wang J, Chubiz LM et al..
2016. Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.. Mol Biol Evol.
Wigley BJ, Slingsby JA, Diaz S, Bond WJ, Fritz H, Coetsee C.
2016. Leaf traits of African woody savanna species across climate and soil fertility gradients: evidence for conservative versus acquisitive resource-use strategies. Journal of Ecology.
Rasquinha DN, Sankaran M.
2016. Modelling biome shifts in the Indian subcontinent under scenarios of future climate change . Current Science. 111(1):147-156.
Mutt E, Sowdhamini R.
2016. Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Gandhimathi A, Sowdhamini R.
2016. Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.
Ghodke PP, Gore KR, Harikrishna S, Samanta B, Kottur J, Nair DT, Pradeepkumar PI.
2016. The N(2)-Furfuryl-deoxyguanosine Adduct Does Not Alter the Structure of B-DNA.. J Org Chem. 81(2):502-11.
Sane SP.
2016. Neurobiology and biomechanics of flight in miniature insects.. Curr Opin Neurobiol. 41:158-166.
Mirza ZA, Vyas R, Patel H, Maheta J, Sanap RV.
2016. A New Miocene-Divergent Lineage of Old World Racer Snake from India.. PLoS One. 11(3):e0148380.
Mirza Z.A, Sanap R.V., Kunte K.
2016. A new species of the genus Thaicharmus Kovařík, 1995 (Scorpiones: Buthidae) from northeast India. Euscorpius. 215:1-11.
Sachdeva H, Barma M, Rao M.
2016. Nonequilibrium description of de novo biogenesis and transport through Golgi-like cisternae.. Sci Rep. 6:38840.
Mithileshwari C, Srivastava T, Kumar V, Kumar A, Umapathy G.
2016. Non-invasive assessment of fecal progestagens and pregnancy detection in Himalayan musk deer (Moschus chrysogaster).. Theriogenology. 85(2):216-23.
Marcel N, Sarin A.
2016. Notch1 regulated autophagy controls survival and suppressor activity of activated murine T-regulatory cells.. Elife. 5
Surana P, Das R.
2016. Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR.. Protein Sci.
Reynolds AM, Reynolds DR, Sane SP, Hu G, Chapman JW.
2016. Orientation in high-flying migrant insects in relation to flows: mechanisms and strategies.. Philos Trans R Soc Lond B Biol Sci. 371(1704)
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.
2016. PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.
2016. The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.
2016. The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Singh J, Udgaonkar JB.
2016. The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Sabareesan AT, Udgaonkar JB.
2016. Pathogenic mutations within the disordered palindromic region of the prion protein induce structure therein and accelerate the formation of misfolded oligomers.. J Mol Biol.
Mathew OKaleeckal, Sowdhamini R.
2016. PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization.. Bioinformation. 12(1):9-11.
Mathew OK, Sowdhamini R.
2016. PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies.. Bioinform Biol Insights. 10:105-9.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.
2016. Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.
2016. Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.
2016. Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.
2016. Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.
2016. Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
Prakash V, Saha S, Chakraborty K, Krishnan Y.
2016. Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chemical Science . 7:1946-1953.
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.
2016. Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.
2016. Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Pasha SNaseer, Meenakshi I, Sowdhamini R.
2016. Revisiting Myosin Families Through Large-scale Sequence Searches Leads to the Discovery of New Myosins.. Evol Bioinform Online. 12:201-11.
Gower DJ, Agarwal I, K. Karanth P, Datta-Roy A, Giri VB, Wilkinson M, San Mauro D.
2016. The role of wet-zone fragmentation in shaping biodiversity patterns in peninsular India: insights from the caecilian amphibian Gegeneophis . JOURNAL OF BIOGEOGRAPHY . 43(6):1091-1102.
Ghosh P, Mathew OK, Sowdhamini R.
2016. RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.. BMC Bioinformatics. 17(1):411.
Ratnam J, Tomlinson KW, Rasquinha DN, Sankaran M.
2016. Savannahs of Asia: antiquity, biogeography, and an uncertain future.. Philos Trans R Soc Lond B Biol Sci. 371(1703)
Osuri A.M, Sankaran M..
2016. Seed size predicts community composition and carbon storage potential of tree communities in rainforest fragments in India’s Western Ghats. Journal of Applied Ecology . 53:837-845.
Sachdev D., Kumar V., Maheshwari PH, Pesricha R.
2016. Silver based nanomaterial, as a selective colorimetric sensor for visual detection of post harvest spoilage in onion. Sensors and Actuators B: Chemical. 228(2):471–479.
Parida SK, Kalia S, Pandit A, Nayak P, Singh RKushal, Gaikwad K, Srivastava PShankar, Singh NK, Mohapatra T.
2016. Single nucleotide polymorphism in sugar pathway and disease resistance genes in sugarcane.. Plant Cell Rep. 35(8):1629-53.
Parida SK, Kalia S, Pandit A, Nayak P, Singh RKushal, Gaikwad K, Srivastava PShankar, Singh NK, Mohapatra T.
2016. Single nucleotide polymorphism in sugar pathway and disease resistance genes in sugarcane.. Plant Cell Rep. 35(8):1629-53.
Parida SK, Kalia S, Pandit A, Nayak P, Singh RKushal, Gaikwad K, Srivastava PShankar, Singh NK, Mohapatra T.
2016. Single nucleotide polymorphism in sugar pathway and disease resistance genes in sugarcane.. Plant Cell Rep. 35(8):1629-53.
Rakesh R, Joseph APraveen, Bhaskara RM, Srinivasan N.
2016. Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.. RNA Biol. 13(10):1025-1040.
Kundu S, Ganguly A, Chakraborty TSubhra, Kumar A, Siddiqi O.
2016. Synergism and Combinatorial Coding for Binary Odor Mixture Perception in Drosophila.. eNeuro. 3(4)
Ghosh P, Grellscheid SNagaraja, Sowdhamini R.
2016. A tale of two paralogs: human Transformer2 proteins with differential RNA-binding affinities.. J Biomol Struct Dyn. 34(9):1979-86.
Vinekar RS, Sowdhamini R.
2016. Three-dimensional modelling of the voltage-gated sodium ion channel from Anopheles gambiae reveals spatial clustering of evolutionarily conserved acidic residues at the extracellular sites.. Curr Neuropharmacol.
Barah P, N MNaika B, Jayavelu NDoni, Sowdhamini R, Shameer K, Bones AM.
2016. Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.. Nucleic Acids Res. 44(7):3147-64.
Barah P, N MNaika B, Jayavelu NDoni, Sowdhamini R, Shameer K, Bones AM.
2016. Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.. Nucleic Acids Res. 44(7):3147-64.
Willaert B, Suyesh R, Garg S, Giri VB, Bee MA, Biju SD.
2016. A unique mating strategy without physical contact during fertilization in Bombay Night Frogs (Nyctibatrachus humayuni) with the description of a new form of amplexus and female call.. PeerJ. 4:e2117.
D'Souza F, Pudakalakatti SM, Uppangala S, Honguntikar S, Salian SRaj, Kalthur G, Pasricha R, Appajigowda D, Atreya HS, Adiga SKumar.
2016. Unraveling the association between genetic integrity and metabolic activity in pre-implantation stage embryos.. Sci Rep. 6:37291.
Singh J, Udgaonkar JB.
2016. Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
2015
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.
2015. 161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.
2015. 161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.
2015. 161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.
2015. 172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.
2015. 172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.