Mass Spectrometry Facility - publications from facility support
Preprints
- Gcn4 mediates SAM allocations and methylation balance between phospholipids and histones | bioRxiv
- Cell clusters are programmed towards a reductive metabolic state by adherence junctions | bioRxiv
- Quantitative, temporal dynamics of the cellular amino acid economy reveals public vs private goods and enables syntrophic yeast community design | bioRxiv
- The conserved biochemical activity and function of an early metazoan phosphatidylinositol 5 phosphate 4-kinase regulates growth and development | bioRxiv
- A genetic and physiological model of renal dysfunction in Lowe syndrome | preprint
2026
- β-Sitosterol extends lifespan and healthspan in Caenorhabditis elegans via multi-omics analysis of longevity, neuronal, and immune pathways | Biochimica et Biophysica Acta (BBA) - General Subjects
- Investigating Enzyme-Substrate Interactions in the Assembly of K48/K63 Heterotypic Ubiquitin Chains | Biochemistry
2025
- Bioenergetic reprogramming of macrophages reduces drug tolerance in Mycobacterium tuberculosis | Nature Communications
- Plasma membrane folate transport in fungi and plants is mediated by members of the oligopeptide transporter (OPT) family | Biochemical Journal
- Isolation of Mitochondria From Yeast to Estimate Mitochondrial Pools of Inorganic Phosphate | BioProtocols
- Seo1p, a high-affinity, plasma membrane transporter of the γ-Glu-met dipeptide in yeasts and fungi | Journal of Biological Chemistry
- Protocol to quantitatively assess glycolysis and related carbon metabolic fluxes using stable isotope tracing in Crabtree-positive yeasts | Star Protocols
- Diurnal variation in skeletal muscle mitochondrial function dictates time‐of‐day‐dependent exercise capacity | FASEB Journal
- Enhanced Notch dependent gliogenesis and delayed physiological maturation underlie neurodevelopmental defects in Lowe syndrome | EMBO Molecular Medicine
- Active control of mitochondrial network morphology by metabolism-driven redox state | PNAS
2024
- The PP2A-like phosphatase Ppg1 mediates assembly of the Far complex to balance gluconeogenic outputs and enables adaptation to glucose depletion | PLoS Genetics
- Inhibition of dipeptidyl peptidase-IV by hydrolysates of beta-lactoglobulin isolated from Gir cow milk | Food Chemistry Advances
- Neem leaf glycoprotein binding to Dectin-1 receptors on dendritic cell induces type-1 immunity through CARD9 mediated intracellular signal to NFκB | Cell Communication & Signal
- Cold-shock proteome of myoblasts reveals role of RBM3 in promotion of mitochondrial metabolism and myoblast differentiation | Communications Biology
- Role of Mating Receptivity Peptides in Helicoverpa armigera: Molecular and Evolutionary Perspectives | Journal of Advances in Biology & Biotechnology
- Metabolic adaptation pilots the differentiation of human hematopoietic cells | Life Science Alliance
- DOTAP Modified Formulations of Aminoacid Based Cationic Liposomes for Improved Gene Delivery and Cell Viability | ChemMedChem
- The deubiquitinase Ubp3/Usp10 constrains glucose-mediated mitochondrial repression via phosphate budgeting | eLIFE
- Senescent cells inhibit mouse myoblast differentiation via the SASP-lipid 15d-PGJ2 mediated modification and control of HRas | eLIFE
- A novel acidic pH-dependent metacaspase governs defense-response against pathogens in tomato | Plant Physiology and Biochemistry
- Proteomic and metabolomic insights into seed germination of Ferula assa-foetida | Journal of Proteomics
- Mass Spectrometry Identifies Taenia solium Proteins in Sera of Patients With and Without Parenchymal Neurocysticercosis | Parasite Immunology
- Serum Proteomic Predictors of Calcification of Solitary Cysticercus Granuloma | The American Journal of Tropical Medicine and Hygiene
2023
- IMPA1 dependent regulation of phosphatidylinositol 4,5-bisphosphate and calcium signalling by lithium | Life Sci Alliance
- PI3P-dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase | Life Sci Alliance
- Structural rationale to understand the effect of disease-associated mutations on Myotubularin | Current Research in Structural Biology
- Eggs of the mosquito Aedes aegypti survive desiccation by rewiring their polyamine and lipid metabolism | PLoS Biology
- Biosensor-integrated transposon mutagenesis reveals rv0158 as a coordinator of redox homeostasis in Mycobacterium tuberculosis | eLife
- Decoding the Assembly of Mixed and Branched Heterotypic Ubiquitin Chains | Analytical Chemistry
2022
- Analysis of Lipid Signaling in Drosophila Photoreceptors using Mass Spectrometry | JOVE
- A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe Syndrome | Biology Open
- Septins tune lipid kinase activity and PI(4,5)P2 turnover during G-protein–coupled PLC signalling in vivo | Life Sci Alliance
- Intermittent scavenging of storage lesion from stored red blood cells by electrospun nanofibrous sheets enhances their quality and shelf-life | Nature Communications
- Mycobacterium tuberculosis requires SufT for Fe-S cluster maturation, metabolism, and survival in vivo | PLoS Pathogens
- Methionine uptake via the SLC43A2 transporter is essential for regulatory T-cell survival | Life Sci Alliance
- Refolding and characterization of a diabody against Pfs25, a vaccine candidate of Plasmodium falciparum | Analytical Biochemistry
- Alterations of Primary Metabolites in Root Exudates of Intercropped Cajanus cajan–Zea mays Modulate the Adaptation and Proteome of Ensifer (Sinorhizobium) fredii NGR234 | Plant Microbe Interactions
- Phosphoproteome of signaling by ErbB2 in ovarian cancer cells | Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
2021
- Kog1/Raptor mediates metabolic rewiring during nutrient limitation by controlling SNF1/AMPK activity | Science Advances
- Destabilization of polar interactions in the prion protein triggers misfolding and oligomerization | Protein Science
- Methylated PP2A stabilizes Gcn4 to enable a methionine-induced anabolic program | Journal of Biological Chemistry
- Age Related Prevalence of Mild Cognitive Impairment in Type 2 Diabetes Mellitus Patients in the Indian Population and Association of Serum Lipids With Cognitive Dysfunction | Frontiers Endocrinology (Lausanne)
- Differential proteins associated with plasma membrane in X- and/or Y-chromosome bearing spermatozoa in indicus cattle | Reproduction in Domestic Animals
2020
- Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program | PLOS Genetics
- Allosteric inhibition of MTHFR prevents futile SAM cycling and maintains nucleotide pools in one-carbon metabolism | Journal of Biological Chemistry
- Resource plasticity-driven carbon-nitrogen budgeting enables specialization and division of labor in a clonal community | eLIFE
- A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes | Biochemical Journal
- Optimization of Protocols for Detection of De Novo Protein Synthesis in Whole Blood Samples via Azide–Alkyne Cycloaddition | Journal of Proteome Research
- Steady-state and Flux-based Trehalose Estimation as an Indicator of Carbon Flow from Gluconeogenesis or Glycolysis | Bioprotocols
- Anabolic SIRT4 Exerts Retrograde Control over TORC1 Signaling by Glutamine Sparing in the Mitochondria | Molecular & Cellular Biology
Before 2018
- Evidence of sinks and sources in the phospholipase C-activated PIP2 cycle | FEBS Letters 2018
- Thiol trapping and metabolic redistribution of sulfur metabolites enable cells to overcome cysteine overload | Microbial Cell 2017
- Phospholipase D activity couples plasma membrane endocytosis with retromer dependent recycling | Elife 2016
- Dynein Clusters into Lipid Microdomains on Phagosomes to Drive Rapid Transport toward Lysosomes | Cell 2016
- Ceramides And Stress Signalling Intersect With Autophagic Defects In Neurodegenerative Drosophila blue cheese (bchs) Mutants | Scientific Reports 2015
- RDGBα, a PI-PA transfer protein regulates G-protein coupled PtdIns(4,5)P2 signaling during Drosophila phototransduction | J Cell Sci. 2015
- Transbilayer lipid interactions mediate nanoclustering of lipid-anchored proteins | Cell 2015
- Altered lipid homeostasis in Drosophila InsP3 receptor mutants leads to obesity and hyperphagia | Dis Model Mech 2013