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2020
K Shafi M, Joshi AG, Meenakshi I, Pasha SNaseer, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  Dataset for the combined transcriptome assembly of and functional annotation.. Data Brief. 30:105416.
Joshi AG, Harini K, Meenakshi I, K Shafi M, Pasha SNaseer, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.. MethodsX. 7:101053.
Pasha SNaseer, K Shafi M, Joshi AG, Meenakshi I, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).. Genomics. 112(1):621-628.
2019
Shameer K, Naika MBN, K Shafi M, Sowdhamini R.  2019.  Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.. Prog Biophys Mol Biol. 145:19-39.
2016
Dhanyalakshmi KH, Naika MBN, Sajeevan RS, Mathew OK, K Shafi M, Sowdhamini R, Nataraja KN.  2016.  An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.. PLoS One. 11(3):e0151323.