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Syiem BLa Nam, Goswami VR, Vasudev D.  2018.  "In a tree by the brook, there's a songbird who sings": Woodlands in an agricultural matrix maintain functionality of a wintering bird community.. PLoS One. 13(8):e0201657.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.  2016.  Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Syama A, Sen S, Kota LNarayanan, Viswanath B, Purushottam M, Varghese M, Jain S, Panicker MM, Mukherjee O.  2018.  Mutation burden profile in familial Alzheimer's disease cases from India.. Neurobiol Aging. 64:158.e7-158.e13.
Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV.  2018.  Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.. Plant Cell.
Swaminathan V, Kalappurakkal JMathew, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S et al..  2017.  Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions.. Proc Natl Acad Sci U S A. 114(40):10648-10653.
Suryawanshi KR, Redpath SM, Bhatnagar YVeer, Ramakrishnan U, Chaturvedi V, Smout SC, Mishra C.  2017.  Impact of wild prey availability on livestock predation by snow leopards.. R Soc Open Sci. 4(6):170026.
Sure GReddy, Chatterjee A, Mishra N, Sabharwal V, Devireddy S, Awasthi A, Mohan S, Koushika SP.  2018.  UNC-16/JIP3 and UNC-76/FEZ1 limit the density of mitochondria in C. elegans neurons by maintaining the balance of anterograde and retrograde mitochondrial transport.. Sci Rep. 8(1):8938.
Suratekar R, Panda A, Padinjat R, Krishna S.  2018.  Evidence of sinks and sources in the phospholipase C activated PIP2 cycle.. FEBS Lett.
Surana P, Gowda CM, Tripathi V, Broday L, Das R.  2017.  Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans.. PLoS One. 12(10):e0186622.
Surana S, Shenoy AR, Krishnan Y.  2015.  Designing DNA nanodevices for compatibility with the immune system of higher organisms.. Nat Nanotechnol. 10(9):741-7.
Surana P, Das R.  2016.  Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR.. Protein Sci.
Sundaramurthy V, Korf H, Singla A, Scherr N, Nguyen L, Ferrari G, Landmann R, Huygen K, Pieters J.  2017.  Survival of Mycobacterium tuberculosis and Mycobacterium bovis BCG in lysosomes in vivo.. Microbes Infect. 19(11):515-526.
Sukhwal A, Sowdhamini R.  2015.  PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.. Bioinform Biol Insights. 9:141-51.
Sujkowski A, Ramesh D, Brockmann A, Wessells R.  2017.  Octopamine Drives Endurance Exercise Adaptations in Drosophila.. Cell Rep. 21(7):1809-1823.
Sudhakaran IP, Ramaswami M.  2017.  Long-term memory consolidation: The role of RNA-binding proteins with prion-like domains.. RNA Biol. 14(5):568-586.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Subramani PA, Vartak-Sharma N, Sreekumar S, Mathur P, Nayer B, Dakhore S, Basavanna SK, Kalappa DM, Krishnamurthy RV, Mukhi B et al..  2020.  Plasmodium vivax liver stage assay platforms using Indian clinical isolates.. Malar J. 19(1):214.
Su S, Lim M, Kunte K.  2015.  Prey from the eyes of predators: Color discriminability of aposematic and mimetic butterflies from an avian visual perspective.. Evolution. 69(11):2985-94.
Sturm S, Ramesh D, Brockmann A, Neupert S, Predel R.  2016.  Agatoxin-like peptides in the neuroendocrine system of the honey bee and other insects.. J Proteomics. 132:77-84.
Streinzer M, Chakravorty J, Neumayer J, Megu K, Narah J, Schmitt T, Bharti H, Spaethe J, Brockmann A.  2019.  Species composition and elevational distribution of bumble bees (Hymenoptera, Apidae, Latreille) in the East Himalaya, Arunachal Pradesh, India.. Zookeys. 851:71-89.
Strauss SKaminski, Schirman D, Jona G, Brooks AN, Kunjapur AM, Ba ANNguyen, Flint A, Solt A, Mershin A, Dixit A et al..  2019.  Evolthon: A community endeavor to evolve lab evolution.. PLoS Biol. 17(3):e3000182.
Srivathsa A, Sharma S, Singh P, Punjabi GA, Oli MK.  2020.  A strategic road map for conserving the Endangered dhole Cuon alpinus in India. MAMMAL REVIEW.
Srivathsa A, Majgaonkar I, Sharma S, Singh P, Punjabi GA, Chawla MM, Banerjee A.  2020.  Opportunities for prioritizing and expanding conservation enterprise in India using a guild of carnivores as flagships. ENVIRONMENTAL RESEARCH LETTERS. 15(6)
Srivathsa A, K Karanth U, N Kumar S, Oli MK.  2019.  Insights from distribution dynamics inform strategies to conserve a dhole Cuon alpinus metapopulation in India.. Sci Rep. 9(1):3081.
Srivathsa A, Puri M, Kumar NS, Jathanna D, Karanth KU.  2018.  Substituting space for time: Empirical evaluation of spatial replication as a surrogate for temporal replication in occupancy modelling . JOURNAL OF APPLIED ECOLOGY . 55(55 ):754-765.
Srivathsa A, Sharma S, Oli MK.  2020.  Every dog has its prey: Range-wide assessment of links between diet patterns, livestock depredation and human interactions for an endangered carnivore.. Sci Total Environ. 714:136798.
Srivastava T, Kumar A.  2018.  Seasonal habitat use in three species of wild ungulates in Sikkim Himalaya . MAMMALIAN BIOLOGY . 88:100-106.
Sriramamurthy R.T., Bhalla R.S, Sankaran M.  2020.  Fire differentially affects mortality and seedling regeneration of three woody invaders in forest-grassland mosaics of the southern Western Ghats, India. BIOLOGICAL INVASIONS.
Srinivasan U, Quader S.  2019.  Size–logging interactions and population dynamics in tropical understorey birds. Current Science. 116(5):795-801.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.  2015.  The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.
Sreekar R, Srinivasan U, Mammides C, Chen J, Goodale UManage, Kotagama SWimalaband, Sidhu S, Goodale E.  2015.  The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India.. Sci Rep. 5:11569.
Spang A, Mayor S.  2018.  Editorial Overview: Membranes and organelles: rethinking membrane structure, function and compartments.. Curr Opin Cell Biol. 53:A1-A3.
Sowdhamini R, Mizuguchi K.  2017.  Editorial-Sequences and topology.. Curr Opin Struct Biol.
Sood P, Murthy K, Kumar V, Nonet ML, Menon GI, Koushika SP.  2018.  Cargo crowding at actin-rich regions along axons causes local traffic jams.. Traffic. 19(3):166-181.
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.  2016.  Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Sondhi Y, Kitching IJ, Basu DNath, Kunte K.  2017.  A new species of Theretra Hubner (Lepidoptera: Sphingidae) from the southern Western Ghats, India. ZOOTAXA. 4323(2):185-196.
Sondhi S., Kunte K.  2016.  Butterflies (Lepidoptera) of the Kameng Protected Area Complex, western Arunachal Pradesh, India. Journal of Threatened Taxa. 8:9053–9124.
Sommerlandt FMJ, Brockmann A, Rössler W, Spaethe J.  2019.  Immediate early genes in social insects: a tool to identify brain regions involved in complex behaviors and molecular processes underlying neuroplasticity.. Cell Mol Life Sci. 76(4):637-651.
Someshwar A, Holla B, Agarwal PPansari, Thomas A, Jose A, Joseph B, Raju B, Karle H, Muthukumaran M, Kodancha PG et al..  2020.  Adverse childhood experiences in families with multiple members diagnosed to have psychiatric illnesses.. Aust N Z J Psychiatry. :4867420931157.
Somasundaram S, Véry A-A, Vinekar RS, Ishikawa T, Kumari K, Pulipati S, Kumaresan K, Corratgé-Faillie C, Sowdhamini R, Parida A et al..  2020.  Homology modeling identifies crucial amino-acid residues that confer higher Na+ transport capacity of OcHKT1;5 from Oryza coarctata Roxb.. Plant Cell Physiol.
Soman S, Bhattacharya A, Panicker MM.  2020.  Dopamine requires unique residues to signal via the serotonin 2A receptor.. Neuroscience. 319-331:319-331.
Solari KA, Ramakrishnan U, Hadly EA.  2018.  Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient.. PLoS One. 13(12):e0207936.
Sneppen K, Semsey S, Seshasayee ASN, Krishna S.  2015.  Restriction modification systems as engines of diversity.. Front Microbiol. 6:528.
Sinha V, Goyal A, Svenningsen SL, Semsey S, Krishna S.  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages.. Front Microbiol. 8:1386.
Sinha S, Dwivedi TRaj, Yengkhom R, Bheemsetty VAnudeep, Abe T, Kiyonari H, VijayRaghavan K, Inamdar MS.  2019.  Asrij/OCIAD1 suppresses CSN5-mediated p53 degradation and maintains mouse hematopoietic stem cell quiescence.. Blood.
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Singh J, Udgaonkar JB.  2015.  Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Singh ASurindro, Takhellambam MChanu, Cappelletti P, Feligioni M.  2020.  Immediate early gene kakusei potentially plays a role in the daily foraging of honey bees.. PLoS One. 15(5):e0222256.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Singh A, Krishna S.  2019.  Immunomodulatory and Therapeutic Potential of Marine Flora Products in the Treatment of Cancer. Bioactive Natural Products for the Management of Cancer: from Bench to Bedside . :139-166.
Singh D, Bhalla USingh.  2018.  Subunit exchange enhances information retention by CaMKII in dendritic spines.. Elife. 7
Singh AS, Shah A, Brockmann A.  2018.  Honey bee foraging induces upregulation of early growth response protein 1, hormone receptor 38 and candidate downstream genes of the ecdysteroid signalling pathway.. Insect Mol Biol. 27(1):90-98.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Singh P, Seshasayee ASai Narain.  2017.  Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.. Methods Mol Biol. 1624:85-97.
Singh P, Macdonald DW.  2017.  Populations and activity patterns of clouded leopards and marbled cats in Dampa Tiger Reserve, India. JOURNAL OF MAMMALOGY. 98(5):1453-1462.
Sil P, Mateos N, Nath S, Buschow S, Manzo C, Suzuki KGN, Fujiwara T, Kusumi A, Garcia-Parajo MF, Mayor S.  2020.  Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane.. Mol Biol Cell. 31(7):561-579.
Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.
Shrivastava R, Köster D, Kalme S, Mayor S, Neerathilingam M.  2015.  Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro.. PLoS One. 10(4):e0123428.
Shivaprasad PV, Hohn T, Akbergenov R.  2015.  Biochemical requirements for two Dicer-like activities from wheat germ.. PLoS One. 10(1):e0116736.
Shivaprasad PV, Chen H-M, Patel K, Bond DM, Santos BACM, Baulcombe DC.  2019.  CORRECTION: A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs.. Plant Cell.
Shivaprasad PV.  2019.  New clues into the mechanisms of rice domestication.. J Biosci. 44(2)
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Shetty R, Joshi D, Jain M, Vasudevan M, Paul JChrysolite, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K et al..  2018.  Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.. Sci Rep. 8(1):5632.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Sharma Y, Saha S, Joseph A, Krishnan H, Raghu P.  2020.  In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and function. Wellcome Open Res. 5:16.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.  2019.  Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Sharma A, Tiwari V, Sowdhamini R.  2020.  Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products.. J Biosci. 45
Sharma SDas, Pal R, Reddy BKumar, Selvaraj BT, Raj N, Samaga KKumar, Srinivasan DJ, Ornelas L, Sareen D, Livesey MR et al..  2020.  Cortical neurons derived from human pluripotent stem cells lacking FMRP display altered spontaneous firing patterns.. Mol Autism. 11(1):52.
Sharma S, Zajac M, Krishnan Y.  2020.  A DNA Aptamer for Cyclic Adenosine Monophosphate that Shows Adaptive Recognition.. Chembiochem. 21(1-2):157-162.
Shameer K, Naika MBN, K Shafi M, Sowdhamini R.  2019.  Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.. Prog Biophys Mol Biol. 145:19-39.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.  2016.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Shah A, Jain R, Brockmann A.  2018.  : A Candidate Transcription Factor Involved in Molecular Processes Underlying Time-Memory.. Front Psychol. 9:865.
K Shafi M, Joshi AG, Meenakshi I, Pasha SNaseer, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  Dataset for the combined transcriptome assembly of and functional annotation.. Data Brief. 30:105416.
Sezgin E, Levental I, Mayor S, Eggeling C.  2017.  The mystery of membrane organization: composition, regulation and roles of lipid rafts.. Nat Rev Mol Cell Biol.
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C, De Monte S.  2018.  Ubiquitous abundance distribution of non-dominant plankton across the global ocean.. Nat Ecol Evol.
Sengupta I, Udgaonkar JB.  2018.  Structural mechanisms of oligomer and amyloid fibril formation by the prion protein.. Chem Commun (Camb).
Sengupta I, Udgaonkar JB.  2017.  Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Sengupta T, Das R, Chattarji S.  2016.  Chronic but not acute immobilization stress stably enhances hippocampal CA1 metabotropic glutamate receptor dependent Long-Term Depression.. Neurosci Lett. 633:101-105.
Sengupta I, Bhate SH, Das R, Udgaonkar JB.  2017.  Salt-mediated oligomerization of the mouse prion protein monitored by real time NMR.. J Mol Biol.
Sengupta I, Udgaonkar J.  2019.  Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Sen S, Udgaonkar JB.  2019.  Binding-induced folding under unfolding conditions: Switching between induced fit and conformational selection mechanisms.. J Biol Chem. 294(45):16942-16952.
Sen S, Goluguri RReddy, Udgaonkar JB.  2017.  A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Sen S, VijayRaghavan K.  2019.  Heinrich Reichert (1949-2019).. Development. 146(16)
Sellamuthu G, Jegadeeson V, Sajeevan RSivarajan, Rajakani R, Parthasarathy P, Raju K, Shabala L, Chen Z-H, Zhou M, Sowdhamini R et al..  2020.  Distinct Evolutionary Origins of Intron Retention Splicing Events in Antiporter Transcripts Relate to Sequence Specific Distinctions in Species.. Front Plant Sci. 11:267.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Scolari VF, Lagomarsino MCosentino.  2015.  Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.. Soft Matter. 11(9):1677-87.
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J.  2017.  Motor control of Drosophila feeding behavior.. Elife. 6
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Saxena N, Natesan D, Sane SP.  2018.  Odor source localization in complex visual environments by fruit flies.. J Exp Biol. 221(Pt 2)
Saxena K, Webster J, Hallas-Potts A, Mackenzie R, Spooner PA, Thomson D, Kind P, Chatterji S, Morris RGM.  2018.  Experiential contributions to social dominance in a rat model of fragile-X syndrome.. Proc Biol Sci. 285(1880)
Savory FR, Ramakrishnan U.  2015.  Cryptic diversity and habitat partitioning in an economically important aphid species complex.. Infect Genet Evol. 30:230-7.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.  2019.  Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Sathe M, Muthukrishnan G, Rae J, Disanza A, Thattai M, Scita G, Parton RG, Mayor S.  2018.  Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin-independent endocytosis.. Nat Commun. 9(1):1835.
Sasidharan R, Venkatesan R.  2019.  Seed Elaiosome Mediates Dispersal by Ants and Impacts Germination in Ricinus communis. FRONTIERS IN ECOLOGY AND EVOLUTION. 7
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarkar A, Mukundan N, Sowndarya S, Dubey VKumar, Babu R, Lakshmanan V, Rangiah K, Panicker MM, Palakodeti D, Subramanian SPeruvemba et al..  2019.  Serotonin is essential for eye regeneration in planaria Schmidtea mediterranea.. FEBS Lett.
Sarkar SS, Trivedi DV, Morck MM, Adhikari AS, Pasha SN, Ruppel KM, Spudich JA.  2020.  The hypertrophic cardiomyopathy mutations R403Q and R663H increase the number of myosin heads available to interact with actin.. Sci Adv. 6(14):eaax0069.

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