Author Title [ Type(Asc)] Year
Journal Article
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J.  2017.  Motor control of Drosophila feeding behavior.. Elife. 6
Prusty AD, Sane SP.  2024.  The motor apparatus of head movements in the Oleander hawkmoth (Daphnis nerii, Lepidoptera).. J Comp Neurol. 532(1):e25577.
Parma V, Ohla K, Veldhuizen MG, Niv MY, Kelly CE, Bakke AJ, Cooper KW, Bouysset C, Pirastu N, Dibattista M et al..  2020.  More than smell - COVID-19 is associated with severe impairment of smell, taste, and chemesthesis.. Chem Senses.
Sitaraman S.  2021.  A monster of a disease.. Elife. 10
Riedel N, Fuller DQ, Marwan N, Poretschkin C, Basavaiah N, Menzel P, Ratnam J, Prasad S, Sachse D, Sankaran M et al..  2021.  Monsoon forced evolution of savanna and the spread of agro-pastoralism in peninsular India.. Sci Rep. 11(1):9032.
Sengupta I, Udgaonkar J.  2019.  Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Habibullah BIsmail, Tripathi V, Surana P, Das R.  2020.  Monitoring protein ubiquitination and SUMOylation in real-time by NMR.. Chem Commun (Camb). 56(49):6735-6738.
Hill KBR, Marshall DC, Marathe K, Moulds MS, Lee YJune, Pham T-H, Mohagan AB, Sarkar V, Price BW, Duffels J.P et al..  2021.  The molecular systematics and diversification of a taxonomically unstable group of Asian cicada tribes related to Cicadini Latreille, 1802 (Hemiptera : Cicadidae). INVERTEBRATE SYSTEMATICS.
G Kumar A, Sarkar P, Stepniewski TMaciej, Jafurulla M, Singh SPal, Selent J, Chattopadhyay A.  2021.  A molecular sensor for cholesterol in the human serotonin receptor.. Sci Adv. 7(30)
Singh G, George G, Raja SO, Kandaswamy P, Kumar M, Thutupalli S, Laxman S, Gulyani A.  2023.  A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration.. Proc Natl Acad Sci U S A. 120(24):e2213241120.
Marshall DC, Moulds M, Hill KBR, Price BW, Wade EJ, Owen CL, Goemans G, Marathe K, Sarkar V, et al..  2018.  A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification. ZOOTAXA. 4424(1):1-64.
Hou Y, Cao C, Chiba H, Chang Z, Huang S, Zhu L, Kunte K, Huang Z, Wang M, Fan X.  2023.  Molecular phylogeny, historical biogeography, and classification of Pseudocoladenia butterflies (Lepidoptera: Hesperiidae).. Mol Phylogenet Evol. 186:107865.
Gandhimathi A, Sowdhamini R.  2016.  Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.
Gangadharan B, Sunitha MS, Mukherjee S, Chowdhury RRoy, Haque F, Sekar N, Sowdhamini R, Spudich JA, Mercer JA.  2017.  Molecular mechanisms and structural features of cardiomyopathy-causing troponin T mutants in the tropomyosin overlap region.. Proc Natl Acad Sci U S A.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Terse VL, Gosavi S.  2021.  The molecular mechanism of domain-swapping of the C-terminal domain of the SARS coronavirus main protease. Biophys J. 120(3):504-516.
Kashyap A, Sebastian SAnne, NarayanaSwamy SRaksha Kri, Raksha KK, Krishnamurthy H, Krishna B, D'Souza G, Idiculla J, Vyas N.  2022.  Molecular markers for early stratification of disease severity and progression in COVID-19.. Biol Methods Protoc. 7(1):bpac028.
Kuwalekar M, Deshmukh R, Padvi A, Kunte K.  2020.  Molecular Evolution and Developmental Expression of Melanin Pathway Genes in Lepidoptera. FRONTIERS IN ECOLOGY AND EVOLUTION. 8
Mutt E, Sowdhamini R.  2016.  Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Lajmi A, Giri VB, K. Karanth P.  2016.  Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). ORGANISMS DIVERSITY & EVOLUTION. 16(3):659-677.
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G.  2016.  Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. METHODS AND APPLICATIONS IN FLUORESCENCE. 4(1)
Das S, Hegde A, Shivaprasad PV.  2018.  Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India.. Arch Virol.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.  2019.  Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Arvindekar S, Jackman MJ, Low JKK, Landsberg MJ, Mackay JP, Viswanath S.  2022.  Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination.. Protein Sci. 31(9):e4387.
Manikkaraja C, Bhavika M, Singh R, Nagarathnam B, George G, Gulyani A, Archunan G, Sowdhamini R.  2020.  Molecular and functional characterization of buffalo nasal epithelial odorant binding proteins and their structural insights by in silico and biochemical approaches. J Biomol Struct Dyn. :1-24.
Thattai M.  2023.  Molecular and cellular constraints on vesicle traffic evolution.. Curr Opin Cell Biol. 80:102151.
Javali A, Lakshmanan V, Palakodeti D, Sambasivan R.  2020.  Modulation of β-catenin levels regulates cranial neural crest patterning and dispersal into first pharyngeal arch.. Dev Dyn.
Kumar H, Singh J, Kumari P, Udgaonkar JB.  2017.  Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
Jethva PN, Udgaonkar JB.  2017.  Modulation of the Extent of Cooperative Structural Change During Protein Folding by Chemical Denaturant.. J Phys Chem B. 121(35):8263-8275.
Baranov MV, Kumar M, Sacanna S, Thutupalli S, van den Bogaart G.  2021.  Modulation of Immune Responses by Particle Size and Shape.. Front Immunol. 607945
Mogre A, Veetil RT, Seshasayee ASai Narain.  2017.  Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli.. G3 (Bethesda). 7(12):3955-3966.
Sharma A, Hasan G.  2020.  Modulation of flight and feeding behaviours requires presynaptic IPRs in dopaminergic neurons.. Elife. 9
Rasquinha DN, Sankaran M.  2016.  Modelling biome shifts in the Indian subcontinent under scenarios of future climate change . Current Science. 111(1):147-156.
Goodale E, Sridhar H, Sieving KE, Bangal P, Z GJColorado, Farine DR, Heymann EW, Jones HH, Krams I, Martínez AE et al..  2020.  Mixed company: a framework for understanding the composition and organization of mixed-species animal groups.. Biol Rev Camb Philos Soc.
Mohamed HM, Lakshmanan V, Sarkar SR, Lei K, Vemula PK, Palakodeti D.  2021.  Mitochondrial state determines functionally divergent stem cell population in planaria. Stem Cell Reports.
Gupte TM.  2015.  Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals.. PLoS One. 10(5):e0126829.
Kabir S, Venkatesan R, Thaker M.  2019.  Mismatch in receiver responses to multimodal signals in a diurnal gecko. Animal Behaviour. 147:115-123.
Arya D, Sachithanandan SP, Ross C, Palakodeti D, Li S, Krishna S.  2017.  MiRNA182 regulates percentage of myeloid and erythroid cells in chronic myeloid leukemia.. Cell Death Dis. 8(1):e2547.
Tirumalai V, Swetha C, Nair A, Pandit A, Shivaprasad PV.  2019.  miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.. J Exp Bot.
Mam B, Karpe SD, Sowdhamini R.  2023.  Minus-C subfamily has diverged from Classic odorant-binding proteins in honeybees. APIDOLOGIE . 54(1):12.
Krishna S, Laxman S.  2018.  A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.. Mol Biol Cell. :mbcE18010017.
Deshmukh R, Baral S, Gandhimathi A, Kuwalekar M, Kunte K.  2018.  Mimicry in butterflies: co-option and a bag of magnificent developmental genetic tricks.. Wiley Interdiscip Rev Dev Biol. 7(1)
Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R.  2022.  Migration of active rings in porous media.. Phys Rev E. 106(1-1):014504.
Dhanyasi N, VijayRaghavan K, Shilo B-Z, Schejter ED.  2021.  Microtubules provide guidance cues for myofibril and sarcomere assembly and growth.. Dev Dyn. 250(1):60-73.
Goluguri RReddy, Sen S, Udgaonkar J.  2019.  Microsecond sub-domain motions and the folding and misfolding of the mouse prion protein.. Elife. 8
Goluguri RReddy, Udgaonkar JB.  2016.  Microsecond rearrangements of hydrophobic clusters in an initially collapsed globule prime structure formation during the folding of a small protein.. J Mol Biol.
Sen S, Kumar H, Udgaonkar JB.  2021.  Microsecond dynamics during the binding-induced folding of an intrinsically disordered protein.. J Mol Biol. :167254.
Thorpe CJ, Lewis TR, Kulkarni S, Watve A, Gaitonde N, Pryce D, Davies L, Bilton DT, Knight ME.  2018.  Micro-habitat distribution drives patch quality for sub-tropical rocky plateau amphibians in the northern Western Ghats, India.. PLoS One. 13(3):e0194810.
Khattri M, Amako Y, Gibbs JR, Collura JL, Arora R, Harold A, Li MYen, Harms PW, Ezhkova E, Shuda M.  2023.  Methyltransferase-independent function of enhancer of zeste homologue 2 maintains tumorigenicity induced by human oncogenic papillomavirus and polyomavirus.. Tumour Virus Res. :200264.
Melvin P, Bankapalli K, D'Silva P, Shivaprasad PV.  2017.  Methylglyoxal detoxification by a DJ-1 family protein provides dual abiotic and biotic stress tolerance in transgenic plants.. Plant Mol Biol.
Punjabi GA, Havmøller LWorsøe, Havmøller RWorsøe, Ngoprasert D, Srivathsa A.  2022.  Methodological approaches for estimating populations of the endangered dhole .. PeerJ. 10:e12905.
Yadahalli S, Jayanthi LP, Gosavi S.  2022.  A Method for Assessing the Robustness of Protein Structures by Randomizing Packing Interactions.. Front Mol Biosci. 9:849272.
Vijayaraghavareddy P, Akula NN, Vemanna RS, Math RGH, Shinde DD, Yin X, Struik PC, Makarla U, Sreeman S.  2021.  Metabolome profiling reveals impact of water limitation on grain filling in contrasting rice genotypes.. Plant Physiol Biochem. 162:690-698.
Varahan S, Walvekar A, Sinha V, Krishna S, Laxman S.  2019.  Metabolic constraints drive self-organization of specialized cell groups.. Elife. 8
Goyal A.  2018.  Metabolic adaptations underlying genome flexibility in prokaryotes.. PLoS Genet. 14(10):e1007763.
Ghosh-Harihar M, Gurung N, Shukla H, Sinha I, Pandit A, Prakash V, Green RE, Ramakrishnan U.  2020.  Metabarcoding for parallel identification of species, sex and diet of obligate scavengers: an application to globally-threatened Gyps vultures. CONSERVATION GENETICS RESOURCES.
Arora R, Rekhi B, Chandrani P, Krishna S, Dutt A.  2019.  Merkel cell polyomavirus is implicated in a subset of Merkel cell carcinomas, in the Indian subcontinent.. Microb Pathog. :103778.
Arora R, Choi JEun, Harms PW, Chandrani P.  2020.  Merkel Cell Polyomavirus in Merkel Cell Carcinoma: Integration Sites and Involvement of the KMT2D Tumor Suppressor Gene.. Viruses. 12(9)
Barnosky AD, Hadly EA, Gonzalez P, Head J, P Polly D, A Lawing M, Eronen JT, Ackerly DD, Alex K, Biber E et al..  2017.  Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems.. Science. 355(6325)
Sant HH, Sane SP.  2018.  The Mechanosensory-Motor Apparatus of Antennae in the Oleander hawk moth (Daphnis nerii, Lepidoptera).. J Comp Neurol.
Thottacherry JJose, Kosmalska AJoanna, Kumar A, Vishen ASingh, Elosegui-Artola A, Pradhan S, Sharma S, Singh PP, Guadamillas MC, Chaudhary N et al..  2018.  Mechanochemical feedback control of dynamin independent endocytosis modulates membrane tension in adherent cells.. Nat Commun. 9(1):4217.
Kumar S, M Venkatesha A, Balaram P.  2022.  Mechanistic Investigations on N-C Bond Cleavages in Dibasic Peptides Containing Internal Lys and Arg Residues.. J Am Soc Mass Spectrom.
Shivakumaraswamy S, Kumar S, Bellur A, Polisetty SDev, Balaram H.  2022.  Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme. BIOCHEMISTRY. 61(18):1988-2006.
Kumar S, M Venkatesha A, Lall S, Prakash S, Balaram P.  2020.  Mechanistic Insights into an Unusual Side-Chain-Mediated N-C Bond Cleavage under Collision-Induced Dissociation Conditions in the Disulfide-Containing Peptide Conopressin.. J Am Soc Mass Spectrom. 31(5):1083-1092.
Joseph AMary, Nahar K, Daw S, Hasan MMahbub, Lo R, Le TBK, Rahman KMiraz, Badrinarayanan A.  2022.  Mechanistic insight into the repair of C8-linked pyrrolobenzodiazepine monomer-mediated DNA damage.. RSC Med Chem. 13(12):1621-1633.
Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DSelvi, Mukundan N, Jambekar A, Thangaraj K et al..  2015.  Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies.. J Biol Chem. 290(11):7003-15.
Raghavender US, Sowdhamini R.  2015.  Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
Kumar H, Udgaonkar JB.  2019.  Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Kumar H, Udgaonkar JB.  2018.  Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Jayanth N, Puranik M.  2017.  Mechanism of Discrimination of 8-Oxoguanosine versus Guanosine by Escherichia coli Fpg.. J Phys Chem B.
Aghera NK, Prabha J, Tandon H, Chattopadhyay G, Vishwanath S, Srinivasan N, Varadarajan R.  2020.  Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase.. Structure. 28(5):562-572.e4.
Sabareesan AThody, Mathew MK, Udgaonkar JB.  2018.  Mechanism of aggregation and membrane interactions of mammalian prion protein.. Biochim Biophys Acta.
Deora T, Gundiah N, Sane SP.  2017.  Mechanics of the thorax in flies.. J Exp Biol. 220(Pt 8):1382-1395.
Gopurappilly R, Deb BKumar, Chakraborty P, Hasan G.  2019.  Measurement of Store-Operated Calcium Entry in Human Neural Cells: From Precursors to Differentiated Neurons.. Methods Mol Biol. 2029:257-271.
Kaushik S, Mahadeva M, Sundaramurthy V, Soni GVivek.  2020.  Measurement of Alcohol-Dependent Physiological Changes in Red Blood Cells Using Resistive Pulse Sensing.. ACS Sens.
Arora R, Vats A, Chimankar V.  2019.  MCV Truncated Large T antigen interacts with BRD4 in tumors. Matters.
Rupprecht J-F, A Vishen S, Shivashankar GV, Rao M, Prost J.  2018.  Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus.. Phys Rev Lett. 120(9):098001.
Agrawal T, Hasan G.  2015.  Maturation of a central brain flight circuit in Drosophila requires Fz2/Ca²⁺ signaling.. Elife. 4
Ramesh D, Brockmann A.  2019.  Mass Spectrometric Quantification of Arousal Associated Neurochemical Changes in Single Honey Bee Brains and Brain Regions.. ACS Chem Neurosci. 10(4):950-1959.
Vijayasarathy M, Balaram P.  2018.  Mass spectrometric identification of bromotryptophan containing conotoxin sequences from the venom of C. amadis.. Toxicon. 144:68-74.
Venkatesan R, Balaram P, Kalmankar NV.  2021.  Mass spectrometric analysis of cyclotides from Clitoria ternatea: Xxx-Pro bond fragmentation as convenient diagnostic of Pro residue positioning.. Chem Asian J.
Madhusudan M.D, Vanak ATamim.  2022.  Mapping the distribution and extent of India's semi-arid open natural ecosystems. JOURNAL OF BIOGEOGRAPHY.
Bhatia S, Krishnamoorthy G, Udgaonkar JB.  2021.  Mapping Distinct Sequences of Structure Formation Differentiating Multiple Folding Pathways of a Small Protein.. J Am Chem Soc.
Rege A, Punjabi GArjun, Jathanna D, Kumar A.  2020.  Mammals Make Use of Cashew Plantations in a Mixed Forest-Cashew Landscape. FRONTIERS IN ENVIRONMENTAL SCIENCE. 8(556942)
Garg KM, Chattopadhyay B, Doss DPSwami, Kumar AKVinoth, Kandula S, Ramakrishnan U.  2015.  Males and females gain differentially from sociality in a promiscuous fruit bat Cynopterus sphinx.. PLoS One. 10(3):e0122180.
Roselli C, Ramaswami M, Boto T, Cervantes-Sandoval I.  2021.  The Making of Long-Lasting Memories: A Fruit Fly Perspective.. Front Behav Neurosci. . 15
Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV.  2018.  Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.. Plant Cell.
Ashe S, Yadav S.  2019.  Maintenance of Rhodopsin levels in Drosophila photoreceptor and phototransduction requires Protein Kinase D.. Fly (Austin).
Thatte P, Joshi A, Vaidyanathan S, Landguth E, Ramakrishnan U.  2018.  Maintaining tiger connectivity and minimizing extinction into the next century: Insights from landscape genetics and spatially-explicit simulations . BIOLOGICAL CONSERVATION . 218:181-191.
Varma A, Udupa S, Sengupta M, Ghosh PKumar, Thirumalai V.  2024.  A machine-learning tool to identify bistable states from calcium imaging data.. J Physiol.
Marcel N, Perumalsamy LR, Shukla SK, Sarin A.  2017.  The lysine deacetylase Sirtuin 1 modulates the localization and function of the Notch1 receptor in regulatory T cells.. Sci Signal. 10(473)
Kumar H, Udgaonkar JB.  2021.  The Lys 280 ➔ Gln mutation mimicking disease-linked acetylation of Lys 280 in tau extends the structural core of fibrils and modulates their catalytic properties.. Protein Sci.
Lupton C, Sengupta M, Cheng R-K, Chia J, Thirumalai V, Jesuthasan S.  2017.  Loss of the Habenula Intrinsic Neuromodulator Kisspeptin1 Affects Learning in Larval Zebrafish.. eNeuro. 4(3)
Das S, Swetha C, Pachamuthu K, Nair A, Shivaprasad PV.  2020.  Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.. Plant Reprod. 33(1):59-73.
Sudhakaran IP, Ramaswami M.  2017.  Long-term memory consolidation: The role of RNA-binding proteins with prion-like domains.. RNA Biol. 14(5):568-586.
Ferry N, Dray S, Fritz H, Ipavec A, Wigley BJ, Charles-Dominique T, Bourgarel M, Sebele L, Valeix M.  2021.  Long-term high densities of African elephants clear the understorey and promote a new stable savanna woodland community. JOURNAL OF VEGETATION SCIENCE. 32(6):e13101.
Kuklin EA, Alkins S, Bakthavachalu B, Genco MC, Sudhakaran I, K Raghavan V, Ramaswami M, Griffith LC.  2017.  The long 3'UTR mRNA of CaMKII is essential for translation-dependent plasticity of spontaneous release in Drosophila melanogaster.. J Neurosci.
Aggarwal A, Reichert H, VijayRaghavan K.  2019.  A locomotor assay reveals deficits in heterozygous Parkinson's disease model and proprioceptive mutants in adult .. Proc Natl Acad Sci U S A.
Chen N, Zhang Y, Adel M, Kuklin EA, Reed ML, Mardovin JD, Bakthavachalu B, VijayRaghavan K, Ramaswami M, Griffith LC.  2022.  Local translation provides the asymmetric distribution of CaMKII required for associative memory formation.. Curr Biol.
Hautier Y, Isbell F, Borer ET, Seabloom EW, W Harpole S, Lind EM, MacDougall AS, Stevens CJ, Adler PB, Alberti J et al..  2018.  Local loss and spatial homogenization of plant diversity reduce ecosystem multifunctionality.. Nat Ecol Evol. 2(1):50-56.

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