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Author Title [ Type(Asc)] Year
Journal Article
Dhingra S, Sowdhamini R, Cadet F, Offmann B.  2020.  A glance into the evolution of template-free protein structure prediction methodologies.. Biochimie. 175:85-92.
Gupta P, Vishnudas CK, Ramakrishnan U, Robin VV, Dharmarajan G.  2019.  Geographical and host species barriers differentially affect generalist and specialist parasite community structure in a tropical sky-island archipelago.. Proc Biol Sci. 286(1904):20190439.
Bangalore MPrakash, Adhikarla S, Mukherjee O, Panicker MM.  2017.  Genotoxic Effects of Culture Media on Human Pluripotent Stem Cells.. Sci Rep. 7:42222.
Hsu JL, Crawford JChase, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA.  2017.  Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption.. Sci Rep. 7(1):16227.
Iyer MS, Joshi AG, Sowdhamini R.  2018.  Genome-wide survey of remote homologues for protein domain superfamilies of known structure reveals unequal distribution across structural classes.. Mol Omics.
Ghosh P, Sowdhamini R.  2016.  Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Rao RM, Pasha SNaseer, Sowdhamini R.  2016.  Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Bhattacharyya T, Sowdhamini R.  2019.  Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.. Evol Bioinform Online. 15:1176934319840289.
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Upadhyay AKumar, Sowdhamini R.  2016.  Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Chib S, Ali F, Seshasayee ASai Narain.  2017.  Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.. mSphere. 2(3)
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.  2016.  Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.  2016.  Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Upadhyay AKumar, Sowdhamini R.  2019.  Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: .. Bioinform Biol Insights. 13:1177932218821362.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.  2015.  The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..  2015.  Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.  2016.  Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Dahal N, Lissovsky AA, Lin Z, Solari K, Hadly EA, Zhan X, Ramakrishnan U.  2017.  Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya.. Mol Phylogenet Evol. 106:55-60.
Patel RP, Wutke S, Lenz D, Mukherjee S, Ramakrishnan U, Veron G, Fickel J, Wilting A, Förster DW.  2017.  Genetic Structure and Phylogeography of the Leopard Cat (Prionailurus bengalensis) Inferred from Mitochondrial Genomes.. J Hered. 108(4):349-360.
Janardan V, Sharma S, Basu U, Raghu P.  2020.  A Genetic Screen in To Identify Novel Regulation of Cell Growth by Phosphoinositide Signaling.. G3 (Bethesda). 10(1):57-67.
Baral S, Arumugam G, Deshmukh R, Kunte K.  2019.  Genetic architecture and sex-specific selection govern modular, male-biased evolution of .. Sci Adv. 5(5):eaau3753.
Parveen S, Panicker MM, Gupta PKumar.  2017.  Generation of an induced pluripotent stem cell line from chorionic villi of a Turner syndrome spontaneous abortion.. Stem Cell Res. 19:12-16.
Houot B, Cazalé-Debat L, Fraichard S, Everaerts C, Saxena N, Sane SP, Ferveur J-F.  2018.  Gene regulation and species-specific evolution of free-flight odor-tracking in Drosophila.. Mol Biol Evol. 35(1):3-15.
Solari KA, Ramakrishnan U, Hadly EA.  2018.  Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient.. PLoS One. 13(12):e0207936.
Mullin AP, Sadanandappa MK, Ma W, Dickman DK, VijayRaghavan K, Ramaswami M, Sanyal S, Faundez V.  2015.  Gene dosage in the dysbindin schizophrenia susceptibility network differentially affect synaptic function and plasticity.. J Neurosci. 35(1):325-38.
Iyer MS, Bhargava K, Pavalam M, Sowdhamini R.  2019.  GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.. Database (Oxford). 2019
Gowda SBM, Paranjpe PD, O Reddy V, Thiagarajan D, Palliyil S, Reichert H, VijayRaghavan K.  2018.  GABAergic inhibition of leg motoneurons is required for normal walking behavior in freely moving.. Proc Natl Acad Sci U S A.
Sabareesan AThody, Udgaonkar JB.  2017.  The G126V Mutation in the Mouse Prion Protein Hinders Nucleation-Dependent Fibril Formation by Slowing Initial Fibril Growth and by Increasing the Critical Concentration.. Biochemistry. 56(44):5931-5942.
Mukherjee A, Singh R, Udayan S, Biswas S, Reddy PPurushotha, Manmadhan S, George G, Kumar S, Das R, Rao BM et al..  2020.  A Fyn biosensor reveals pulsatile, spatially localized kinase activity and signaling crosstalk in live mammalian cells.. Elife. 9
Yadahalli S, Gosavi S.  2016.  Functionally Relevant Specific Packing Can Determine Protein Folding Routes.. J Mol Biol. 428(2 Pt B):509-21.
Ratnam J, Chengappa SK, Machado S, Nataraj N, Osuri AM, Sankaran M.  2019.  Functional Traits of Trees From Dry Deciduous “Forests” of Southern India Suggest Seasonal Drought and Fire Are Important Drivers. Front. Ecol. Evol..
Raghu P.  2020.  Functional diversity in a lipidome.. Proc Natl Acad Sci U S A. 117(21):11191-11193.
G KP, Kuruvilla S, Mathew MK.  2015.  Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).. Plant Physiol Biochem. 97:165-74.
Mathre S, Reddy B, Ramya V, Krishnan H, Ghosh A, Raghu P.  2019.  Functional analysis of the biochemical activity of mammalian phosphatidylinositol 5 phosphate 4-kinase enzymes.. Biosci Rep.
Panda A, Thakur R, Krishnan H, Naik A, Shinde D, Raghu P.  2018.  Functional analysis of mammalian phospholipase D enzymes.. Biosci Rep.
Batra S, Corcoran J, Zhang D-D, Pal P, P UK, Kulkarni R, Löfstedt C, Sowdhamini R, Olsson SB.  2019.  A Functional Agonist of Insect Olfactory Receptors: Behavior, Physiology and Structure.. Front Cell Neurosci. 13:134.
Farheen N, Thattai M.  2019.  Frustration and fidelity in influenza genome assembly.. J R Soc Interface. 16(160):20190411.
Joshi AA, Ratnam J, Sankaran M.  2019.  Frost maintains forests and grasslands as alternate states in a montane tropical forest–grassland mosaic; but alien tree invasion and warming can disrupt this balance. JOURNAL OF ECOLOGY.
Joshi AA, Ratnam J, Sankaran M.  2020.  Frost maintains forests and grasslands as alternate states in a montane tropical forest-grassland mosaic; but alien tree invasion and warming can disrupt this balance. JOURNAL OF ECOLOGY. 108(1):122-132.
Chaturvedi D, VijayRaghavan K.  2019.  From a syncytium to mononucleate cells and back: Yki and JNK in symphony.. J Cell Biol.
Diwan GD, Agashe D.  2016.  The Frequency of Internal Shine-Dalgarno-like Motifs in Prokaryotes.. Genome Biol Evol. 8(6):1722-33.
Milán-Garcés EA, Thaore P, Udgaonkar JB, Puranik M.  2015.  Formation of a CH-π contact in the core of native barstar during folding.. J Phys Chem B. 119(7):2928-32.
Hasan G.  2019.  Formal structures of mentorship in universities and research institutions will benefit both science and scientists. Current Science. 116(10):1615-1616.
Joshi AA, Sankaran M, Ratnam J.  2018.  ‘Foresting’ the grassland: Historical management legacies in forest-grassland mosaics in southern India, and lessons for the conservation of tropical grassy biomes. Biological Conservation. 224:144-152.
Zambre AM, Arthur R.  2018.  Foraging plasticity in obligate corallivorous Melon butterflyfish across three recently bleached reefs . ETHOLOGY. 124 (5):302-310.
Patankar V, D'Souza E, Alcoverro T, Arthur R.  2016.   For traditional island communities in the Nicobar archipelago, complete no-go areas are the most effective form of marine management . OCEAN & COASTAL MANAGEMENT . 133:53-63.
Rao VVHemanth, Gosavi S.  2018.  On the folding of a structurally complex protein to its metastable active state.. Proc Natl Acad Sci U S A.
D'Souza MNinochka, Gowda NKumar Chan, Tiwari V, Babu ROttakandat, Anand P, Dastidar SGhosh, Singh R, Selvaraja B, Pal R, Ramesh A et al..  2018.  FMRP Interacts with C/D Box snoRNA in the Nucleus and Regulates Ribosomal RNA Methylation.. iScience. 9:399-411.
Ravi P, Trivedi D, Hasan G.  2018.  FMRFa receptor stimulated Ca2+ signals alter the activity of flight modulating central dopaminergic neurons in Drosophila melanogaster.. PLoS Genet. 14(8):e1007459.
Roy S, Mathew MK.  2018.  Fluid flow modulates electrical activity in cardiac hERG potassium channels.. J Biol Chem.
Thutupalli S, Geyer D, Singh R, Adhikari R, Stone HA.  2018.  Flow-induced phase separation of active particles is controlled by boundary conditions.. Proc Natl Acad Sci U S A.
Jain A., Kunte K, Webb E.L..  2016.  Flower specialization of butterflies and impacts of non-native flower use in a transformed tropical landscape. Biological Conservation. 201:84–191.
Liu P, Sane SP, Mongeau J-M, Zhao J, Cheng B.  2019.  Flies land upside down on a ceiling using rapid visually mediated rotational maneuvers.. Sci Adv. 5(10):eaax1877.
Nandwani N, Surana P, Negi H, Mascarenhas NM, Udgaonkar JB, Das R, Gosavi S.  2019.  A five-residue motif for the design of domain swapping in proteins.. Nat Commun. 10(1):452.
Jumani S, Rao S, Kelkar N.  2018.  Fish community responses to stream flow alterations and habitat modifications by small hydropower projects in the Western Ghats biodiversity hotspot, India. Aquatic Conservation: Marine and Freshwater Ecosystems. 28(4):9792-993.
Deshpande K., Gangal M, Kelkar N.  2016.  First record of a bat from the Lakshadweep archipelago, southwestern India. Mammalia. 80(2):223-225.
Caleb JTD, Sanap R.V., Patel KG, Sudhikumar AV.  2018.  First description of the female of Chrysilla volupe (Karsch, 1879) (Araneae: Salticidae: Chrysillini) from India, with notes on the species’ distribution and life history. Arthropoda Selecta. 27(2):143-153.
Mirza ZA, Gowande GG, Patil R, Ambekar M, Patel H.  2018.  First appearance deceives many: disentangling the species complex using an integrated approach.. PeerJ. 6:e5341.
Sriramamurthy R.T., Bhalla R.S, Sankaran M.  2020.  Fire differentially affects mortality and seedling regeneration of three woody invaders in forest-grassland mosaics of the southern Western Ghats, India. BIOLOGICAL INVASIONS.
Viswan NA, HarshaRani GVani, Stefan MI, Bhalla US.  2018.  FindSim: A Framework for Integrating Neuronal Data and Signaling Models.. Front Neuroinform. 12:38.
Dovih P, Laing ED, Chen Y, Low DHW, Ansil BR, Yang X, Shi Z, Broder CC, Smith GJD, Linster M et al..  2019.  Filovirus-reactive antibodies in humans and bats in Northeast India imply zoonotic spillover.. PLoS Negl Trop Dis. 13(10):e0007733.
Honda A, Kita T, Seshadri SVidhya, Misaki K, Ahmed Z, Ladbury JE, Richardson GP, Yonemura S, Ladher RK.  2018.  FGFR1-mediated protocadherin-15 loading mediates cargo specificity during intraflagellar transport in inner ear hair-cell kinocilia.. Proc Natl Acad Sci U S A. 115(33):8388-8393.
Khan I, Prakash A, Issar S, Umarani M, Sasidharan R, Masagalli JN, Lama P, Venkatesan R, Agashe D.  2018.  Female Density-Dependent Chemical Warfare Underlies Fitness Effects of Group Sex Ratio in Flour Beetles. American Naturalist.
Bhaumik V., Kunte K.  2018.   Female butterflies modulate investment in reproduction and flight in response to monsoon-driven migrations. OIKOS. 127 (2):285-296.
Kumar S, Mahajan S, Jain S.  2018.  Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis.. PLoS One. 13(10):e0203311.
Weinert T, Olieric V, Waltersperger S, Panepucci E, Chen L, Zhang H, Zhou D, Rose J, Ebihara A, Kuramitsu S et al..  2015.  Fast native-SAD phasing for routine macromolecular structure determination.. Nat Methods. 12(2):131-3.
Banerjee A, Grazon C, Nadal B, Pons T, Krishnan Y, Dubertret B.  2015.  Fast, Efficient, and Stable Conjugation of Multiple DNA Strands on Colloidal Quantum Dots.. Bioconjug Chem. 26(8):1582-9.
Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE, Brangwynne CP.  2017.  Farming and public goods production in Caenorhabditis elegans populations.. Proc Natl Acad Sci U S A. 114(9):2289-2294.
Palavalli-Nettimi R, Sane SP.  2018.  Fairyflies.. Curr Biol. 28(23):R1331-R1332.
Mandal R, Bhuyan PJyoti, Chaudhuri P, Dasgupta C, Rao M.  2020.  Extreme active matter at high densities.. Nat Commun. 11(1):2581.
Rahman MMostafizur, Shukla A, Chattarji S.  2018.  Extinction recall of fear memories formed before stress is not affected despite higher theta activity in the amygdala.. Elife. 7
Manjila SB, Kuruvilla M, Ferveur J-F, Sane SP, Hasan G.  2019.  Extended Flight Bouts Require Disinhibition from GABAergic Mushroom Body Neurons.. Curr Biol. 29(2):283-293.e5.
Sengupta I, Udgaonkar JB.  2017.  Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Godbole A, Dubey AK, Mitra R, Reddy PS, Mathew MK.  2015.  Expression and purification of OsVDAC4.. Methods Enzymol. 556:51-75.
Mandalaparthy V, Sanaboyana VRamana, Rafalia H, Gosavi S.  2018.  Exploring the effects of sparse restraints on protein structure prediction.. Proteins. 86(2):248-262.
G Kumar A, Sarkar P, Jafurulla M, Singh SPal, Srinivas G, Pande G, Chattopadhyay A.  2019.  Exploring Endocytosis and Intracellular Trafficking of the Human Serotonin Receptor.. Biochemistry.
Khan I, Prakash A, Agashe D.  2017.  Experimental evolution of insect immune memory versus pathogen resistance.. Proc Biol Sci. 284(1869)
Saxena K, Webster J, Hallas-Potts A, Mackenzie R, Spooner PA, Thomson D, Kind P, Chatterji S, Morris RGM.  2018.  Experiential contributions to social dominance in a rat model of fragile-X syndrome.. Proc Biol Sci. 285(1880)
Agarwal I, Bauer AM, Giri VB, Khandekar A.  2019.  An expanded ND2 phylogeny of the brookii and prashadi groups with the description of three new Indian Hemidactylus Oken (Squamata: Gekkonidae).. Zootaxa. 4619(3):zootaxa.4619.3.2.
Ganesh S, P HAhmed, Nadella RKumar, More RPrabhakar, Sheshadri M, Viswanath B, Rao M, Jain S, Mukherjee O.  2019.  Exome sequencing in families with severe mental illness identifies novel and rare variants in genes implicated in Mendelian neuropsychiatric syndromes.. Psychiatry Clin Neurosci. 73(1):11-19.
Chatterjee P, Mohan U, Krishnan A, Sane SP.  2020.  Evolutionary constraints on flicker fusion frequency in Lepidoptera.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Joshi J, Prakash A, Kunte K.  2017.  Evolutionary Assembly of Communities in Butterfly Mimicry Rings.. Am Nat. 189(4):E58-E76.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Strauss SKaminski, Schirman D, Jona G, Brooks AN, Kunjapur AM, Ba ANNguyen, Flint A, Solt A, Mershin A, Dixit A et al..  2019.  Evolthon: A community endeavor to evolve lab evolution.. PLoS Biol. 17(3):e3000182.
Suratekar R, Panda A, Padinjat R, Krishna S.  2018.  Evidence of sinks and sources in the phospholipase C activated PIP2 cycle.. FEBS Lett.
Br A, Dovih P, Ramakrishnan U, Liang E, Mendenhall I, Hong DLWen, Smith JGD.  2019.  Evidence of filovirus and henipavirus in bats and bat harvesters, India. International Journal of Infectious Diseases. 79(Suppl.1):60.
Wang T, Goyal A, Dubinkina V, Maslov S.  2019.  Evidence for a multi-level trophic organization of the human gut microbiome.. PLoS Comput Biol. 15(12):e1007524.
Srivathsa A, Sharma S, Oli MK.  2020.  Every dog has its prey: Range-wide assessment of links between diet patterns, livestock depredation and human interactions for an endangered carnivore.. Sci Total Environ. 714:136798.
Bendigiri C, Harini K, Yenkar S, Zinjarde S, Sowdhamini R, RaviKumar A.  2018.  Evaluating Ylehd, a recombinant epoxide hydrolase from Yarrowia lipolytica as a potential biocatalyst for the resolution of benzyl glycidyl ether. RSC ADVANCES. 8(23):12918-12926.
Nayak G, Honguntikar SD, Kalthur SGuruprasad, D'Souza ASylvan, Mutalik S, Setty MM, Kalyankumar R, Krishnamurthy H, Kalthur G, Adiga SKumar.  2016.  Ethanolic extract of Moringa oleifera Lam. leaves protect the pre-pubertal spermatogonial cells from cyclophosphamide-induced damage.. J Ethnopharmacol. 182:101-9.
Wegener C, Hasan G.  2019.  ER-Ca2+ sensor STIM regulates neuropeptides required for development under nutrient restriction in Drosophila.. PLoS One. 14(7):e0219719.
Sane SP.  2017.  Eppur si vola (and yet it flies).. J Exp Biol. 220(Pt 4):514-516.
KKrishnadas M, Kumar A, Comita LS.  2016.  Environmental gradients structure tropical tree assemblages at the regional scale . JOURNAL OF VEGETATION SCIENCE . 27(6):1117-1128.
Ramakrishnan G, Ochoa-Montaño B, Raghavender US, Mudgal R, Joshi AG, Chandra NR, Sowdhamini R, Blundell TL, Srinivasan N.  2015.  Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: insights into structure and function.. Tuberculosis (Edinb). 95(1):14-25.
Neelamraju S, Gosavi S, Wales DJ.  2018.  Energy Landscape of the Designed Protein Top7.. J Phys Chem B.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Vaishnav A, Shukla AK, Sharma A, Kumar R, Choudhary DK.  2019.  Endophytic Bacteria in Plant Salt Stress Tolerance: Current and Future Prospects. Journal of Plant Growth Regulation. 38(2):650–668.
Hemalatha A, Prabhakara C, Mayor S.  2016.  Endocytosis of Wingless via a dynamin-independent pathway is necessary for signaling in Drosophila wing discs.. Proc Natl Acad Sci U S A.
Mirza ZA, Warekar P, Mohapatra PP, Raju D, Patil P, Dutta SK, Pal S.  2019.  "Endangered or an artifact of unsound taxonomy? Case of the critically endangered bush frog Philautus sanctisilvaticus Das and Chanda, 1997". Zootaxa. 4683(4):zootaxa.4683.4.6.

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