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Author Title Type [ Year(Asc)]
2016
Barah P, N MNaika B, Jayavelu NDoni, Sowdhamini R, Shameer K, Bones AM.  2016.  Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.. Nucleic Acids Res. 44(7):3147-64.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.  2016.  Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Rao VHemanth Gi, Gosavi S.  2016.  Using the folding landscapes of proteins to understand protein function.. Curr Opin Struct Biol. 36:67-74.
Mirza ZA, Vyas R, Patel H, Maheta J, Sanap RV.  2016.  A New Miocene-Divergent Lineage of Old World Racer Snake from India.. PLoS One. 11(3):e0148380.
Khurana TRoy, Sane SP.  2016.  Airflow and optic flow mediate antennal positioning in flying honeybees.. Elife. 5
Surana P, Das R.  2016.  Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR.. Protein Sci.
Khedkar S, Seshasayee ASai Narain.  2016.  Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology? G3 (Bethesda). 6(6):1597-606.
Mathew OKaleeckal, Sowdhamini R.  2016.  PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization.. Bioinformation. 12(1):9-11.
Devarajan K.  2016.  The Antsy Social Network: Determinants of Nest Structure and Arrangement in Asian Weaver Ants.. PLoS One. 11(6):e0156681.
Kolay S, Basu U, Raghu P.  2016.  Control of diverse subcellular processes by a single multi-functional lipid phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2].. Biochem J. 473(12):1681-92.
Mutt E, Sowdhamini R.  2016.  Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Willaert B, Suyesh R, Garg S, Giri VB, Bee MA, Biju SD.  2016.  A unique mating strategy without physical contact during fertilization in Bombay Night Frogs (Nyctibatrachus humayuni) with the description of a new form of amplexus and female call.. PeerJ. 4:e2117.
Rahman MMostafizur, Callaghan CK, Kerskens CM, Chattarji S, O'Mara SM.  2016.  Early hippocampal volume loss as a marker of eventual memory deficits caused by repeated stress.. Sci Rep. 6:29127.
Gupta P, Bhalla US.  2016.  Olfaction: Minority odors get equal say.. Elife. 5
Malhotra P, Udgaonkar JB.  2016.  Secondary Structural Change Can Occur Diffusely and Not Modularly during Protein Folding and Unfolding Reactions.. J Am Chem Soc. 138(18):5866-78.
Goluguri RReddy, Udgaonkar JB.  2016.  Microsecond rearrangements of hydrophobic clusters in an initially collapsed globule prime structure formation during the folding of a small protein.. J Mol Biol.
Osuri A.M, Sankaran M..  2016.  Seed size predicts community composition and carbon storage potential of tree communities in rainforest fragments in India’s Western Ghats. Journal of Applied Ecology . 53:837-845.
Osuri AM, Ratnam J, Varma V, Alvarez-Loayza P, Astaiza JHurtado, Bradford M, Fletcher C, Ndoundou-Hockemba M, Jansen PA, Kenfack D et al..  2016.  Contrasting effects of defaunation on aboveground carbon storage across the global tropics.. Nat Commun. 7:11351.
Wigley BJ, Slingsby JA, Diaz S, Bond WJ, Fritz H, Coetsee C.  2016.  Leaf traits of African woody savanna species across climate and soil fertility gradients: evidence for conservative versus acquisitive resource-use strategies. Journal of Ecology.
Bhagavan H, Muthmann O, Brockmann A.  2016.  Structural and temporal dynamics of the bee curtain in the open-nesting honey bee species, Apis florea. Apidologie.
Marcel N, Sarin A.  2016.  Notch1 regulated autophagy controls survival and suppressor activity of activated murine T-regulatory cells.. Elife. 5
Nair A, Agashe D.  2016.  Host-specific, spatial and temporal variation in culturable gut bacterial communities of dragonflies. Current Science. 110(8):1513-1523.
Diwan GD, Agashe D.  2016.  The Frequency of Internal Shine-Dalgarno-like Motifs in Prokaryotes.. Genome Biol Evol. 8(6):1722-33.
Nayak DD, Agashe D, Lee M-C, Marx CJ.  2016.  Selection Maintains Apparently Degenerate Metabolic Pathways due to Tradeoffs in Using Methylamine for Carbon versus Nitrogen.. Curr Biol. 26(11):1416-26.
Dey G, Thattai M, Baum B.  2016.  On the Archaeal Origins of Eukaryotes and the Challenges of Inferring Phenotype from Genotype. Trends in Cell Biology. 26, (7):476–485.
Deb BK, Pathak T, Hasan G.  2016.  Store-independent modulation of Ca(2+) entry through Orai by Septin 7.. Nat Commun. 7
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Ray S, Chintaluri C, Bhalla US, Wójcik DK.  2016.  NSDF: Neuroscience Simulation Data Format.. Neuroinformatics. 14(2):147-67.
Gowrishankar K, Rao M.  2016.  Nonequilibrium phase transitions, fluctuations and correlations in an active contractile polar fluid.. Soft Matter. 12(7):2040-6.
Prakash V, Saha S, Chakraborty K, Krishnan Y.  2016.  Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chemical Science . 7:1946-1953.
Das A, Polley A, Rao M.  2016.  Phase Segregation of Passive Advective Particles in an Active Medium.. Phys Rev Lett. 116(6):068306.
Kottur J, Nair DT.  2016.  Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics.. Angew Chem Int Ed Engl. 55(7):2397-400.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.  2016.  Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Yadav S, Rathod P, Alcoverro T, Arthur R.  2016.  Choice and destiny: the substrate composition and mechanical stability of settlement structures can mediate coral recruit fate in post-bleached reefs. Coral Reefs. 35(1):211-222.
Deshpande K., Gangal M, Kelkar N.  2016.  First record of a bat from the Lakshadweep archipelago, southwestern India. Mammalia. 80(2):223-225.
Lakshminarayanan N., Karanth K.K., Goswami V.R., Vaidyanathan S., Karanth U.  2016.  Determiants of dry season habitat use by Asian elephants in the Western Ghats of India. Journal of Zoological. 298(3):169–177.
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.  2016.  Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Nayak G, Honguntikar SD, Kalthur SGuruprasad, D'Souza ASylvan, Mutalik S, Setty MM, Kalyankumar R, Krishnamurthy H, Kalthur G, Adiga SKumar.  2016.  Ethanolic extract of Moringa oleifera Lam. leaves protect the pre-pubertal spermatogonial cells from cyclophosphamide-induced damage.. J Ethnopharmacol. 182:101-9.
Sachdev D., Kumar V., Maheshwari PH, Pesricha R.  2016.  Silver based nanomaterial, as a selective colorimetric sensor for visual detection of post harvest spoilage in onion. Sensors and Actuators B: Chemical. 228(2):471–479.
Ammothumkandy A, Maliekal TThomas, Bose MVahanan, Rajkumar T, Shirley S, Thejaswini B, Giri VG, Krishna S.  2016.  CD66 and CD49f expressing cells are associated with distinct neoplastic phenotypes and progression in human cervical cancer.. Eur J Cancer. 60:166-178.
Gowda M., Ambardar S., Dighe N., Manjunath A., Shankaralingu C., Hallappa P., Harting J., Ranade S., Jagannathan L., Krishna S..  2016.  Comparative analyses of low, medium and high-resolution HLA typing technologies for human populations. Journal of Clinical & Cellular Immunology. 7
Saha S, Anilkumar AAmbika, Mayor S.  2016.  GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
Jain D, Narayanan N, Nair DT.  2016.  Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.. J Biol Chem. 291(3):1235-42.
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.  2016.  PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Bhagavathula NChaitanya, Kumar M, Krishnappa C.  2016.  A simple non-invasive technique for venom milking from a solitary wasp Delta conoideum Gmelin (Hymenoptera: Vespidae).. Toxicon. 109:4-6.
Ghodke PP, Gore KR, Harikrishna S, Samanta B, Kottur J, Nair DT, Pradeepkumar PI.  2016.  The N(2)-Furfuryl-deoxyguanosine Adduct Does Not Alter the Structure of B-DNA.. J Org Chem. 81(2):502-11.
Ghosh P, Sowdhamini R.  2016.  Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Yadahalli S, Gosavi S.  2016.  Functionally Relevant Specific Packing Can Determine Protein Folding Routes.. J Mol Biol. 428(2 Pt B):509-21.
Thattai M.  2016.  Universal Poisson Statistics of mRNAs with Complex Decay Pathways.. Biophys J. 110(2):301-5.
Harshita C, Jain D.  2016.  Cloning, expression, purification, crystallization and initial crystallographic analysis of FleN from Pseudomonas aeruginosa.. Acta Crystallogr F Struct Biol Commun. 72(Pt 2):135-8.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Nussinov R, Udgaonkar JB.  2016.  Editorial overview: Folding and binding: Dynamic conformational heterogeneity is pivotal to cell life.. Curr Opin Struct Biol. 36:iv-vi.
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.  2016.  Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Agashe D, Sane M, Phalnikar K, Diwan GD, Habibullah A, Martinez-Gomez NCecilia, Sahasrabuddhe V, Polachek W, Wang J, Chubiz LM et al..  2016.  Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.. Mol Biol Evol.
Köster DVasco, Husain K, Iljazi E, Bhat A, Bieling P, R Mullins D, Rao M, Mayor S.  2016.  Actomyosin dynamics drive local membrane component organization in an in vitro active composite layer.. Proc Natl Acad Sci U S A. 113(12):E1645-54.
Dhanyalakshmi KH, Naika MBN, Sajeevan RS, Mathew OK, K Shafi M, Sowdhamini R, Nataraja KN.  2016.  An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.. PLoS One. 11(3):e0151323.
Köster DV, Mayor S.  2016.  Cortical actin and the plasma membrane: inextricably intertwined.. Curr Opin Cell Biol. 38:81-9.
Mani S, Thattai M.  2016.  Wine glasses and hourglasses: Non-adaptive complexity of vesicle traffic in microbial eukaryotes.. Mol Biochem Parasitol.
Yadav S, Cockcroft S, Raghu P.  2016.  The Drosophila photoreceptor as a model system for studying signalling at membrane contact sites.. Biochem Soc Trans. 44(2):447-51.
Baliga C, Majhi S, Mondal K, Bhattacharjee A, VijayRaghavan K, Varadarajan R.  2016.  Rational elicitation of cold-sensitive phenotypes.. Proc Natl Acad Sci U S A. 113(18):E2506-15.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.  2016.  The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Mirza Z.A, Sanap R.V., Kunte K.  2016.  A new species of the genus Thaicharmus Kovařík, 1995 (Scorpiones: Buthidae) from northeast India. Euscorpius. 215:1-11.
McNeill MS, Kapheim KM, Brockmann A, McGill TAW, Robinson GE.  2016.  Brain regions and molecular pathways responding to food reward type and value in honey bees.. Genes Brain Behav. 15(3):305-17.
Sturm S, Ramesh D, Brockmann A, Neupert S, Predel R.  2016.  Agatoxin-like peptides in the neuroendocrine system of the honey bee and other insects.. J Proteomics. 132:77-84.
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Mithileshwari C, Srivastava T, Kumar V, Kumar A, Umapathy G.  2016.  Non-invasive assessment of fecal progestagens and pregnancy detection in Himalayan musk deer (Moschus chrysogaster).. Theriogenology. 85(2):216-23.
Ghosh P, Grellscheid SNagaraja, Sowdhamini R.  2016.  A tale of two paralogs: human Transformer2 proteins with differential RNA-binding affinities.. J Biomol Struct Dyn. 34(9):1979-86.
Khan I, Prakash A, Agashe D.  2016.  Immunosenescence and the ability to survive bacterial infection in the red flour beetle Tribolium castaneum.. J Anim Ecol. 85(1):291-301.
Gandhimathi A, Sowdhamini R.  2016.  Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.  2016.  Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
2015
Marthews T.R, Nelaballi S., Ratnam J., Sankaran M..  2015.  Ecosystem monitoring and forest census studies in South Asia (Meeting Report). Current Science. 180:1779–1782.
Krishnaswamy J., Vaidyanathan S., Rajagopalan B., Bonell M., Sankaran M., Bhalla R.S, Badiger S..  2015.  Non‑stationary and non‑linear influence of ENSO and Indian Ocean Dipole on the variability of Indian monsoon rainfall and extreme rain events. Climate Dynamics. 45:175-184..
Varma V., Ratnam J., Viswanathan V., Osuri A.M, Biesmeijer J.C, Madhusudan M.D, Sankaran M..  2015.  Perceptions of priority issues in the conservation of biodiversity and ecosystems in India. Biological Conservation . 187:201-211.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2015.  Landscape scale habitat suitability modelling of bats in the Western Ghats of India: Bats like something in their tea. Biological Conservation. 191:529–536.
Ramesh A.  2015.  Second messenger - Sensing riboswitches in bacteria.. Semin Cell Dev Biol. 47-48:3-8.
Manoharan M, Muhammad SAuwn, Sowdhamini R.  2015.  Sequence Analysis and Evolutionary Studies of Reelin Proteins.. Bioinform Biol Insights. 9:187-93.
Parchure A, Vyas N, Ferguson C, Parton RG, Mayor S.  2015.  Oligomerization and endocytosis of Hedgehog is necessary for its efficient exovesicular secretion.. Mol Biol Cell. 26(25):4700-17.
Kunte K, Roy P, Kalesh S., Kodandaramaia U.  2015.  Butterflies of India. Indian Foundation for Butterflies. 2(10)
Kiran C.G, Kalesh S., Kunte K.  2015.  A new species of damselfly, Protosticta ponmudiensis (Odonata: Zygoptera: Platystictidae) from Ponmudi Hills in the Western Ghats of India. Journal of Threatened Taxa. 7(5):7146-7151.
Kunte K.  2015.  A new species of Hypolycaena (Lepidoptera: Lycenidae) from Arunachal Pradesh, north-eastern India. The Journal of Research on the Lepidoptera. 48:21-27.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Mak S-S, Wrabel A, Nagai H, Ladher RK, Sheng G.  2015.  Zebra finch as a developmental model.. Genesis. 53(11):669-77.
Su S, Lim M, Kunte K.  2015.  Prey from the eyes of predators: Color discriminability of aposematic and mimetic butterflies from an avian visual perspective.. Evolution. 69(11):2985-94.
Mak S-S, Alev C, Nagai H, Wrabel A, Matsuoka Y, Honda A, Sheng G, Ladher RK.  2015.  Characterization of the finch embryo supports evolutionary conservation of the naive stage of development in amniotes.. Elife. 4:e07178.
Muthmann J-O, Amin H, Sernagor E, Maccione A, Panas D, Berdondini L, Bhalla US, Hennig MH.  2015.  Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays.. Front Neuroinform. 9:28.
Bhattacharyya U, Bhalla USingh.  2015.  Robust and Rapid Air-Borne Odor Tracking without Casting(1,2,3).. eNeuro. 2(6)
Dhanyasi N, Segal D, Shimoni E, Shinder V, Shilo B-Z, VijayRaghavan K, Schejter ED.  2015.  Surface apposition and multiple cell contacts promote myoblast fusion in Drosophila flight muscles.. J Cell Biol. 211(1):191-203.
Mukherjee O, Das G, Sen S, Dutt A, Alladi S, Ghosh A.  2015.  C9orf72 mutations may be rare in frontotemporal lobar degeneration patients in India.. Amyotroph Lateral Scler Frontotemporal Degener. :1-3.
G KP, Kuruvilla S, Mathew MK.  2015.  Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).. Plant Physiol Biochem. 97:165-74.
Raghavender US, Sowdhamini R.  2015.  Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Das T, Ganguly S, Sengupta S, Rao M.  2015.  Pre-yield non-affine fluctuations and a hidden critical point in strained crystals.. Sci Rep. 5:10644.
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Banerjee A, Marbach F, Anselmi F, Koh MS, Davis MB, da Silva PGarcia, Delevich K, Oyibo HK, Gupta P, Li B et al..  2015.  An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb.. Neuron. 87(1):193-207.
Dinesh KP, Vijayakumar SP, Channakeshavamurthy BH, Torsekar VR, Kulkarni NU, Shanker K.  2015.  Systematic status of Fejervarya ((Amphibia, Anura, Dicroglossidae) from South and SE Asia with the description of a new species from the Western Ghats of Peninsular India.. Zootaxa. 3999(1):79-94.
Surana S, Shenoy AR, Krishnan Y.  2015.  Designing DNA nanodevices for compatibility with the immune system of higher organisms.. Nat Nanotechnol. 10(9):741-7.
Bendtsen KMoss, Jensen MH, Krishna S, Semsey S.  2015.  The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells.. Sci Rep. 5:13910.
Pathak T, Agrawal T, Richhariya S, Sadaf S, Hasan G.  2015.  Store-Operated Calcium Entry through Orai Is Required for Transcriptional Maturation of the Flight Circuit in Drosophila.. J Neurosci. 35(40):13784-99.
Sukhwal A, Sowdhamini R.  2015.  PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.. Bioinform Biol Insights. 9:141-51.
Goluguri RReddy, Udgaonkar JB.  2015.  Rise of the Helix from a Collapsed Globule during the Folding of Monellin.. Biochemistry. 54(34):5356-65.

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