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Author Title [ Type(Desc)] Year
Journal Article
Padinjat R, Joseph A, Krishnan H, Singh P, Saha S.  2019.  Phosphoinositides: Regulators of Nervous System Function in Health and Disease. FRONTIERS IN MOLECULAR NEUROSCIENCE. 12
Thakur R, Panda A, Coessens E, Raj N, Yadav S, Balakrishnan S, Zhang Q, Georgiev P, Basak B, Pasricha R et al..  2016.  Phospholipase D activity couples plasma membrane endocytosis with retromer dependent recycling.. Elife. 5
Cockcroft S, Raghu P.  2018.  Phospholipid transport protein function at organelle contact sites.. Curr Opin Cell Biol. 53:52-60.
Kim S, Kalappurakkal JM, Mayor S, Rosen MK.  2019.  Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction.. Mol Biol Cell. :mbcE18120823.
Agarwal I, Ramakrishnan U.  2017.  A phylogeny of open-habitat lizards (Squamata: Lacertidae: Ophisops) supports the antiquity of Indian grassy biomes. JOURNAL OF BIOGEOGRAPHY . 44(9):2021-2032.
Kosmalska AJoanna, Casares L, Elosegui-Artola A, Thottacherry JJose, Moreno-Vicente R, González-Tarragó V, del Pozo MÁngel, Mayor S, Arroyo M, Navajas D et al..  2015.  Physical principles of membrane remodelling during cell mechanoadaptation.. Nat Commun. 6:7292.
Vijayakrishnan S, Kumar MAnanda, Umapathy G, Kumar V, Sinha A.  2018.  Physiological stress responses in wild Asian elephants Elephas maximus in a human-dominated landscape in the Western Ghats, southern India.. Gen Comp Endocrinol. 266:150-156.
Mathew OKaleeckal, Sowdhamini R.  2016.  PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization.. Bioinformation. 12(1):9-11.
Mathew OK, Sowdhamini R.  2016.  PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies.. Bioinform Biol Insights. 10:105-9.
R Kumar V.  2019.  Plant Antiviral Immunity Against Geminiviruses and Viral Counter-Defense for Survival.. Front Microbiol. 10:1460.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Ghosh E, Venkatesan R.  2019.  Plant Volatiles Modulate Immune Responses of Spodoptera litura.. J Chem Ecol.
Jain D, Narayanan N, Nair DT.  2016.  Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.. J Biol Chem. 291(3):1235-42.
Chandrasegaran K, Singh A, Laha M, Quader S.  2018.  Playing it safe? Behavioural responses of mosquito larvae encountering a fish predator ETHOLOGY ECOLOGY & EVOLUTION. 30(1):70-87.
Johnson MK, Kottur J, Nair DT.  2019.  A polar filter in DNA polymerases prevents ribonucleotide incorporation.. Nucleic Acids Res.
Singh P, Macdonald DW.  2017.  Populations and activity patterns of clouded leopards and marbled cats in Dampa Tiger Reserve, India. JOURNAL OF MAMMALOGY. 98(5):1453-1462.
Sukhwal A, Sowdhamini R.  2015.  PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.. Bioinform Biol Insights. 9:141-51.
Bhatia A, Moza S, Bhalla USingh.  2019.  Precise excitation-inhibition balance controls gain and timing in the hippocampus.. Elife. 8
Yang L, Ravikanthachari N, Mariño-Pérez R, Deshmukh R, Wu M, Rosenstein A, Kunte K, Song H, Andolfatto P.  2019.  Predictability in the evolution of Orthopteran cardenolide insensitivity.. Philos Trans R Soc Lond B Biol Sci. 374(1777):20180246.
Su S, Lim M, Kunte K.  2015.  Prey from the eyes of predators: Color discriminability of aposematic and mimetic butterflies from an avian visual perspective.. Evolution. 69(11):2985-94.
Das T, Ganguly S, Sengupta S, Rao M.  2015.  Pre-yield non-affine fluctuations and a hidden critical point in strained crystals.. Sci Rep. 5:10644.
Mahita J, Sowdhamini R.  2018.  Probing subtle conformational changes induced by phosphorylation and point mutations in the TIR domains of TLR2 and TLR3.. Proteins.
Ghosh-Harihar M, An R, Athrey R, Borthakur U, Chanchani P, Chetry D, Datta A, Harihar A, Karanth KK, Mariyam D et al..  2019.  Protected areas and biodiversity conservation in India. BIOLOGICAL CONSERVATION. 237:114-124.
Mascarenhas NManuel, Gosavi S.  2016.  Protein Domain-Swapping Can Be a Consequence of Functional Residues.. J Phys Chem B. 120(28):6929-38.
Ashe S, Malhotra V, Raghu P.  2018.  Protein kinase D regulates metabolism and growth by controlling secretion of insulin like peptide.. Dev Biol. 434(1):175-185.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.  2016.  Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Broom A, Gosavi S, Meiering EM.  2015.  Protein unfolding rates correlate as strongly as folding rates with native structure.. Protein Sci. 24(4):580-7.
Nilofer C, Sukhwal A, Mohanapriya A, Kangueane P.  2017.  Protein-protein interfaces are vdW dominant with selective H-bonds and (or) electrostatics towards broad functional specificity.. Bioinformation. 13(6):164-173.
Richhariya S, Jayakumar S, Abruzzi K, Rosbash M, Hasan G.  2017.  A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons.. Sci Rep. 7:42586.
Jha A, van Zanten TS, Philippe J-M, Mayor S, Lecuit T.  2018.  Quantitative Control of GPCR Organization and Signaling by Endocytosis in Epithelial Morphogenesis.. Curr Biol.
Bhatia D, Arumugam S, Nasilowski M, Joshi H, Wunder C, Chambon V, Prakash V, Grazon C, Nadal B, Maiti PK et al..  2016.  Quantum dot-loaded monofunctionalized DNA icosahedra for single-particle tracking of endocytic pathways.. Nat Nanotechnol.
Chakraborty D, Ramakrishnan U, Sinha A.  2015.  Quaternary climate change and social behavior shaped the genetic differentiation of an endangered montane primate from the southern edge of the Tibetan Plateau.. Am J Primatol. 77(3):271-84.
Richhariya S, Hasan G.  2017.  Ral function in muscle is required for flight maintenance in Drosophila.. Small GTPases. :1-6.
Nandi SKumar, Mandal R, Bhuyan PJyoti, Dasgupta C, Rao M, Gov NS.  2018.  A random first-order transition theory for an active glass.. Proc Natl Acad Sci U S A. 115(30):7688-7693.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.  2016.  Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
Prakash V, Saha S, Chakraborty K, Krishnan Y.  2016.  Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chemical Science . 7:1946-1953.
Baliga C, Majhi S, Mondal K, Bhattacharjee A, VijayRaghavan K, Varadarajan R.  2016.  Rational elicitation of cold-sensitive phenotypes.. Proc Natl Acad Sci U S A. 113(18):E2506-15.
Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P.  2015.  RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.. J Cell Sci. 128(17):3330-44.
Yadav S, Thakur R, Georgiev P, Deivasigamani S, Krishnan H, Ratnaparkhi G, Raghu P.  2018.  RDGBα localization and function at membrane contact sites is regulated by FFAT-VAP interactions.. J Cell Sci. 131(1)
Kottur J, Nair DT.  2016.  Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics.. Angew Chem Int Ed Engl. 55(7):2397-400.
Gower DJ, Giri V, Captain A, Wilkinson M.  2016.  A reassessment of Melanophidium Günther, 1864 (Squamata: Serpentes: Uropeltidae) from the Western Ghats of peninsular India, with the description of a new species.. Zootaxa. 4085(4):481-503.
Hemalatha A, Mayor S.  2019.  Recent advances in clathrin-independent endocytosis.. F1000Res. 8
Chaitanya R, Giri VB, Deepak V..  2017.  On the recent designation of a neotype for the taxon Calotes versicolor (Daudin, 1802) (Reptilia: Agamidae). Zootaxa. 4317(3):585-587.
Dash PKumar, Pattabiraman C, Tandel K, Sharma S, Kumar JS, Siddappa S, Gowda M, Krishna S, Parida M.  2018.  Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing.. Genome Announc. 6(26)
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.  2016.  Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Cyriac VP, Johny A, Umesh P, Palot M, Campbell PD.  2019.  Rediscovery of Cnemaspis nilagirica Manamendra-Arachchi, Batuwita and Pethiyagoda, 2007 (Squamata: Gekkonidae) from Kerala, India with notes on morphology and distribution. ZOOTAXA. 4586(1):98-108.
Lal A, Krishna S, Seshasayee ASai Narain.  2018.  Regulation of Global Transcription in by Rsd and 6S RNA.. G3 (Bethesda).
Thakur R, Naik A, Panda A, Raghu P.  2019.  Regulation of Membrane Turnover by Phosphatidic Acid: Cellular Functions and Disease Implications.. Front Cell Dev Biol. 7:83.
Balakrishnan SS, Basu U, Shinde D, Thakur R, Jaiswal M, Raghu P.  2018.  Regulation of PI4P levels by PI4KIIIα during G-protein coupled PLC signaling in photoreceptors.. J Cell Sci.
Deb BK, Hasan G.  2016.  Regulation of Store-Operated Ca(2+) Entry by Septins.. Front Cell Dev Biol. 4:142.
Dubey AK, Godbole A, Mathew MK.  2016.  Regulation of VDAC trafficking modulates cell death.. Cell Death Discov. 2:16085.
Patel D, Anilkumar S, Chattarji S, Buwalda B.  2018.  Repeated social stress leads to contrasting patterns of structural plasticity in the amygdala and hippocampus.. Behav Brain Res. 347:314-324.
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Krishnamurthi R, Ghosh S, Khedkar S, Seshasayee ASai Narain.  2017.  Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12.. mSphere. 2(6)
Basu S, Sanyal P, Pillai AAS, Ambili A.  2019.  Response of grassland ecosystem to monsoonal precipitation variability during the Mid-Late Holocene: Inferences based on molecular isotopic records from Banni grassland, western India.. PLoS One. 14(4):e0212743.
Ongole S, Sankaran M, Karanth KK.  2018.  Responses of aerial insectivorous bats to local and landscape-level features of coffee agroforestry systems in Western Ghats, India.. PLoS One. 13(8):e0201648.
Borah B, Quader S, Srinivasan U.  2018.  Responses of interspecific associations in mixed-species bird flocks to selective logging. Journal of Applied Ecology. 55(4):1637-1646.
Sneppen K, Semsey S, Seshasayee ASN, Krishna S.  2015.  Restriction modification systems as engines of diversity.. Front Microbiol. 6:528.
Marathe K, Sanborn AF, Kunte K.  2018.  Revision of the genus Rustia Stål, 1866 (Hemiptera: Cicadidae: Cicadinae) including a generic synonymy, four new combinations, and two new species from the Western Ghats, India.. Zootaxa. 4457(3):431-443.
Pasha SNaseer, Meenakshi I, Sowdhamini R.  2016.  Revisiting Myosin Families Through Large-scale Sequence Searches Leads to the Discovery of New Myosins.. Evol Bioinform Online. 12:201-11.
Thomas P, Pranatharthi A, Ross C, Srivastava S.  2019.  RhoC: a fascinating journey from a cytoskeletal organizer to a Cancer stem cell therapeutic target.. J Exp Clin Cancer Res. 38(1):328.
Pranatharthi A, Thomas P, Udayashankar AH, Bhavani C, Suresh SBangalore, Krishna S, Thatte J, Srikantia N, Ross CR, Srivastava S.  2019.  RhoC regulates radioresistance via crosstalk of ROCK2 with the DNA repair machinery in cervical cancer.. J Exp Clin Cancer Res. 38(1):392.
Goluguri RReddy, Udgaonkar JB.  2015.  Rise of the Helix from a Collapsed Globule during the Folding of Monellin.. Biochemistry. 54(34):5356-65.
Bakthavachalu B, Huelsmeier J, Sudhakaran IP, Hillebrand J, Singh A, Petrauskas A, Thiagarajan D, Sankaranarayanan M, Mizoue L, Anderson EN et al..  2018.  RNP-Granule Assembly via Ataxin-2 Disordered Domains Is Required for Long-Term Memory and Neurodegeneration.. Neuron. 98(4):754-766.e4.
Agashe D.  2017.  The road not taken: Could stress-specific mutations lead to different evolutionary paths? PLoS Biol. 15(6):e2002862.
Bhattacharyya U, Bhalla USingh.  2015.  Robust and Rapid Air-Borne Odor Tracking without Casting(1,2,3).. eNeuro. 2(6)
Gaitonde N, Giri VB, Kunte K.  2016.  'On the rocks': reproductive biology of the endemic toad Xanthophryne (Anura: Bufonidae) from the Western Ghats, India . Journal of Natural History. 50(39-40):2557-2572.
Patel D, Kas MJ, Chattarji S, Buwalda B.  2019.  Rodent models of social stress and neuronal plasticity: relevance to depressive-like disorders.. Behav Brain Res.
Nair AG, Bhalla US, Kotaleski JHellgren.  2016.  Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration.. PLoS Comput Biol. 12(9):e1005080.
Bendtsen KMoss, Jensen MH, Krishna S, Semsey S.  2015.  The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells.. Sci Rep. 5:13910.
Gower DJ, Agarwal I, K. Karanth P, Datta-Roy A, Giri VB, Wilkinson M, San Mauro D.  2016.  The role of wet-zone fragmentation in shaping biodiversity patterns in peninsular India: insights from the caecilian amphibian Gegeneophis . JOURNAL OF BIOGEOGRAPHY . 43(6):1091-1102.
Dahake A, Stöckl AL, Foster JJ, Sane SP, Kelber A.  2018.  The roles of vision and antennal mechanoreception in hawkmoth flight control.. Elife. 7
Wigley BJ, Staver C, Zytkowiak R, Jagodzinski AM, Wigley-Coetsee C.  2019.  Root trait variation in African savannas. Plant and Soil. 441(1-2):555–565.
Saha P, Nandi AK, Unnikrishnan S, Shilpa MC, Shukla SP, Mandal S, Mitra A, Gadagkar R.  2018.  A Route to Direct Fitness: Natural and Experimentally Induced Queen Succession in the Tropical Primitively Eusocial Wasp Ropalidia marginata . JOURNAL OF INSECT BEHAVIOR . 31(1):54-65.
Ghosh P, Mathew OK, Sowdhamini R.  2016.  RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.. BMC Bioinformatics. 17(1):411.
Shetty R, Joshi D, Jain M, Vasudevan M, Paul JChrysolite, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K et al..  2018.  Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.. Sci Rep. 8(1):5632.
Moulick R, Goluguri RReddy, Udgaonkar JB.  2019.  Ruggedness in the Free Energy Landscape Dictates Misfolding of the Prion Protein.. J Mol Biol.
Baral A, Irani NG, Fujimoto M, Nakano A, Mayor S, Mathew MK.  2015.  Salt-induced remodeling of spatially restricted clathrin-independent endocytic pathways in Arabidopsis root.. Plant Cell. 27(4):1297-315.
Sengupta I, Bhate SH, Das R, Udgaonkar JB.  2017.  Salt-mediated oligomerization of the mouse prion protein monitored by real time NMR.. J Mol Biol.
Hindle SJ, Hebbar S, Schwudke D, Elliott CJH, Sweeney ST.  2017.  A saposin deficiency model in Drosophila: Lysosomal storage, progressive neurodegeneration and sensory physiological decline.. Neurobiol Dis. 98:77-87.
Ratnam J, Tomlinson KW, Rasquinha DN, Sankaran M.  2016.  Savannahs of Asia: antiquity, biogeography, and an uncertain future.. Philos Trans R Soc Lond B Biol Sci. 371(1703)
Bauer G, Fakhri N, Kicheva A, Kondev J, Kruse K, Noji H, Riveline D, Saunders TE, Thattai M, Wieschaus E.  2018.  The Science of Living Matter for Tomorrow.. Cell Syst. 6(4):400-402.
Srivastava T, Kumar A.  2018.  Seasonal habitat use in three species of wild ungulates in Sikkim Himalaya . MAMMALIAN BIOLOGY . 88:100-106.
Ramesh A.  2015.  Second messenger - Sensing riboswitches in bacteria.. Semin Cell Dev Biol. 47-48:3-8.
Malhotra P, Udgaonkar JB.  2016.  Secondary Structural Change Can Occur Diffusely and Not Modularly during Protein Folding and Unfolding Reactions.. J Am Chem Soc. 138(18):5866-78.
Joshi RS, Quadros R, Drumm M, Ain R, Panicker MM.  2017.  Sedative effect of Clozapine is a function of 5-HT2A and environmental novelty.. Eur Neuropsychopharmacol. 27(1):70-81.
Sasidharan R, Venkatesan R.  2019.  Seed Elaiosome Mediates Dispersal by Ants and Impacts Germination in Ricinus communis. FRONTIERS IN ECOLOGY AND EVOLUTION. 7
Osuri A.M, Sankaran M..  2016.  Seed size predicts community composition and carbon storage potential of tree communities in rainforest fragments in India’s Western Ghats. Journal of Applied Ecology . 53:837-845.
Nayak DD, Agashe D, Lee M-C, Marx CJ.  2016.  Selection Maintains Apparently Degenerate Metabolic Pathways due to Tradeoffs in Using Methylamine for Carbon versus Nitrogen.. Curr Biol. 26(11):1416-26.
Liu G, Patch A, Bahar F, Yllanes D, Welch RD, M Marchetti C, Thutupalli S, Shaevitz JW.  2019.  Self-Driven Phase Transitions Drive Myxococcus xanthus Fruiting Body Formation.. Phys Rev Lett. 122(24):248102.
Tait C, Batra S, Ramaswamy SSubha, Feder JL, Olsson SB.  2016.  Sensory specificity and speciation: a potential neuronal pathway for host fruit odour discrimination in Rhagoletis pomonella.. Proc Biol Sci. 283(1845)
Deb BKumar, Hasan G.  2018.  SEPT7-mediated regulation of Ca entry through Orai channels requires other septin subunits.. Cytoskeleton (Hoboken). 76(1):104-114.
Manoharan M, Muhammad SAuwn, Sowdhamini R.  2015.  Sequence Analysis and Evolutionary Studies of Reelin Proteins.. Bioinform Biol Insights. 9:187-93.
Mani RS, Dovih DP, Ashwini MA, Chattopadhyay B, Harsha PK, Garg KM, Sudarshan S, Puttaswamaiah R, Ramakrishnan U, Madhusudana SN.  2017.  Serological Evidence of Lyssavirus Infection among Bats in Nagaland, a North-Eastern State in India.. Epidemiol Infect. :1-7.
Sarkar A, Mukundan N, Sowndarya S, Dubey VKumar, Babu R, Lakshmanan V, Rangiah K, Panicker MM, Palakodeti D, Subramanian SPeruvemba et al..  2019.  Serotonin is essential for eye regeneration in planaria Schmidtea mediterranea.. FEBS Lett.
Choudhury SDey, Mushtaq Z, Reddy-Alla S, Balakrishnan SS, Thakur RS, Krishnan KS, Raghu P, Ramaswami M, Kumar V.  2016.  sigma(2)-Adaptin Facilitates Basal Synaptic Transmission and Is Required for Regenerating Endo-Exo Cycling Pool Under High-Frequency Nerve Stimulation in Drosophila. GENETICS. 1
Morris RG.  2017.  Signatures of Mechanosensitive Gating.. Biophys J. 112(1):3-9.
Sachdev D., Kumar V., Maheshwari PH, Pesricha R.  2016.  Silver based nanomaterial, as a selective colorimetric sensor for visual detection of post harvest spoilage in onion. Sensors and Actuators B: Chemical. 228(2):471–479.
Bhagavathula NChaitanya, Kumar M, Krishnappa C.  2016.  A simple non-invasive technique for venom milking from a solitary wasp Delta conoideum Gmelin (Hymenoptera: Vespidae).. Toxicon. 109:4-6.
Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-Montaño B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL et al..  2015.  SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.. Database (Oxford). 2015:bav060.

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