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Author Title Type [ Year(Asc)]
2016
Das A, Polley A, Rao M.  2016.  Phase Segregation of Passive Advective Particles in an Active Medium.. Phys Rev Lett. 116(6):068306.
Kottur J, Nair DT.  2016.  Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics.. Angew Chem Int Ed Engl. 55(7):2397-400.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.  2016.  Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Yadav S, Rathod P, Alcoverro T, Arthur R.  2016.  Choice and destiny: the substrate composition and mechanical stability of settlement structures can mediate coral recruit fate in post-bleached reefs. Coral Reefs. 35(1):211-222.
Deshpande K., Gangal M, Kelkar N.  2016.  First record of a bat from the Lakshadweep archipelago, southwestern India. Mammalia. 80(2):223-225.
Lakshminarayanan N., Karanth K.K., Goswami V.R., Vaidyanathan S., Karanth U.  2016.  Determiants of dry season habitat use by Asian elephants in the Western Ghats of India. Journal of Zoological. 298(3):169–177.
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.  2016.  Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Nayak G, Honguntikar SD, Kalthur SGuruprasad, D'Souza ASylvan, Mutalik S, Setty MM, Kalyankumar R, Krishnamurthy H, Kalthur G, Adiga SKumar.  2016.  Ethanolic extract of Moringa oleifera Lam. leaves protect the pre-pubertal spermatogonial cells from cyclophosphamide-induced damage.. J Ethnopharmacol. 182:101-9.
Sachdev D., Kumar V., Maheshwari PH, Pesricha R.  2016.  Silver based nanomaterial, as a selective colorimetric sensor for visual detection of post harvest spoilage in onion. Sensors and Actuators B: Chemical. 228(2):471–479.
Ammothumkandy A, Maliekal TThomas, Bose MVahanan, Rajkumar T, Shirley S, Thejaswini B, Giri VG, Krishna S.  2016.  CD66 and CD49f expressing cells are associated with distinct neoplastic phenotypes and progression in human cervical cancer.. Eur J Cancer. 60:166-178.
Gowda M., Ambardar S., Dighe N., Manjunath A., Shankaralingu C., Hallappa P., Harting J., Ranade S., Jagannathan L., Krishna S..  2016.  Comparative analyses of low, medium and high-resolution HLA typing technologies for human populations. Journal of Clinical & Cellular Immunology. 7
Saha S, Anilkumar AAmbika, Mayor S.  2016.  GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
Jain D, Narayanan N, Nair DT.  2016.  Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.. J Biol Chem. 291(3):1235-42.
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.  2016.  PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Bhagavathula NChaitanya, Kumar M, Krishnappa C.  2016.  A simple non-invasive technique for venom milking from a solitary wasp Delta conoideum Gmelin (Hymenoptera: Vespidae).. Toxicon. 109:4-6.
Ghodke PP, Gore KR, Harikrishna S, Samanta B, Kottur J, Nair DT, Pradeepkumar PI.  2016.  The N(2)-Furfuryl-deoxyguanosine Adduct Does Not Alter the Structure of B-DNA.. J Org Chem. 81(2):502-11.
Ghosh P, Sowdhamini R.  2016.  Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Yadahalli S, Gosavi S.  2016.  Functionally Relevant Specific Packing Can Determine Protein Folding Routes.. J Mol Biol. 428(2 Pt B):509-21.
Thattai M.  2016.  Universal Poisson Statistics of mRNAs with Complex Decay Pathways.. Biophys J. 110(2):301-5.
Harshita C, Jain D.  2016.  Cloning, expression, purification, crystallization and initial crystallographic analysis of FleN from Pseudomonas aeruginosa.. Acta Crystallogr F Struct Biol Commun. 72(Pt 2):135-8.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Nussinov R, Udgaonkar JB.  2016.  Editorial overview: Folding and binding: Dynamic conformational heterogeneity is pivotal to cell life.. Curr Opin Struct Biol. 36:iv-vi.
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.  2016.  Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Agashe D, Sane M, Phalnikar K, Diwan GD, Habibullah A, Martinez-Gomez NCecilia, Sahasrabuddhe V, Polachek W, Wang J, Chubiz LM et al..  2016.  Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.. Mol Biol Evol.
Köster DVasco, Husain K, Iljazi E, Bhat A, Bieling P, R Mullins D, Rao M, Mayor S.  2016.  Actomyosin dynamics drive local membrane component organization in an in vitro active composite layer.. Proc Natl Acad Sci U S A. 113(12):E1645-54.
Dhanyalakshmi KH, Naika MBN, Sajeevan RS, Mathew OK, K Shafi M, Sowdhamini R, Nataraja KN.  2016.  An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.. PLoS One. 11(3):e0151323.
Köster DV, Mayor S.  2016.  Cortical actin and the plasma membrane: inextricably intertwined.. Curr Opin Cell Biol. 38:81-9.
Mani S, Thattai M.  2016.  Wine glasses and hourglasses: Non-adaptive complexity of vesicle traffic in microbial eukaryotes.. Mol Biochem Parasitol.
Yadav S, Cockcroft S, Raghu P.  2016.  The Drosophila photoreceptor as a model system for studying signalling at membrane contact sites.. Biochem Soc Trans. 44(2):447-51.
Baliga C, Majhi S, Mondal K, Bhattacharjee A, VijayRaghavan K, Varadarajan R.  2016.  Rational elicitation of cold-sensitive phenotypes.. Proc Natl Acad Sci U S A. 113(18):E2506-15.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.  2016.  The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Mirza Z.A, Sanap R.V., Kunte K.  2016.  A new species of the genus Thaicharmus Kovařík, 1995 (Scorpiones: Buthidae) from northeast India. Euscorpius. 215:1-11.
McNeill MS, Kapheim KM, Brockmann A, McGill TAW, Robinson GE.  2016.  Brain regions and molecular pathways responding to food reward type and value in honey bees.. Genes Brain Behav. 15(3):305-17.
Sturm S, Ramesh D, Brockmann A, Neupert S, Predel R.  2016.  Agatoxin-like peptides in the neuroendocrine system of the honey bee and other insects.. J Proteomics. 132:77-84.
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Mithileshwari C, Srivastava T, Kumar V, Kumar A, Umapathy G.  2016.  Non-invasive assessment of fecal progestagens and pregnancy detection in Himalayan musk deer (Moschus chrysogaster).. Theriogenology. 85(2):216-23.
Ghosh P, Grellscheid SNagaraja, Sowdhamini R.  2016.  A tale of two paralogs: human Transformer2 proteins with differential RNA-binding affinities.. J Biomol Struct Dyn. 34(9):1979-86.
Khan I, Prakash A, Agashe D.  2016.  Immunosenescence and the ability to survive bacterial infection in the red flour beetle Tribolium castaneum.. J Anim Ecol. 85(1):291-301.
Gandhimathi A, Sowdhamini R.  2016.  Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.  2016.  Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
2015
Marthews T.R, Nelaballi S., Ratnam J., Sankaran M..  2015.  Ecosystem monitoring and forest census studies in South Asia (Meeting Report). Current Science. 180:1779–1782.
Krishnaswamy J., Vaidyanathan S., Rajagopalan B., Bonell M., Sankaran M., Bhalla R.S, Badiger S..  2015.  Non‑stationary and non‑linear influence of ENSO and Indian Ocean Dipole on the variability of Indian monsoon rainfall and extreme rain events. Climate Dynamics. 45:175-184..
Varma V., Ratnam J., Viswanathan V., Osuri A.M, Biesmeijer J.C, Madhusudan M.D, Sankaran M..  2015.  Perceptions of priority issues in the conservation of biodiversity and ecosystems in India. Biological Conservation . 187:201-211.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2015.  Landscape scale habitat suitability modelling of bats in the Western Ghats of India: Bats like something in their tea. Biological Conservation. 191:529–536.
Ramesh A.  2015.  Second messenger - Sensing riboswitches in bacteria.. Semin Cell Dev Biol. 47-48:3-8.
Manoharan M, Muhammad SAuwn, Sowdhamini R.  2015.  Sequence Analysis and Evolutionary Studies of Reelin Proteins.. Bioinform Biol Insights. 9:187-93.
Parchure A, Vyas N, Ferguson C, Parton RG, Mayor S.  2015.  Oligomerization and endocytosis of Hedgehog is necessary for its efficient exovesicular secretion.. Mol Biol Cell. 26(25):4700-17.
Kunte K, Roy P, Kalesh S., Kodandaramaia U.  2015.  Butterflies of India. Indian Foundation for Butterflies. 2(10)
Kiran C.G, Kalesh S., Kunte K.  2015.  A new species of damselfly, Protosticta ponmudiensis (Odonata: Zygoptera: Platystictidae) from Ponmudi Hills in the Western Ghats of India. Journal of Threatened Taxa. 7(5):7146-7151.
Kunte K.  2015.  A new species of Hypolycaena (Lepidoptera: Lycenidae) from Arunachal Pradesh, north-eastern India. The Journal of Research on the Lepidoptera. 48:21-27.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Mak S-S, Wrabel A, Nagai H, Ladher RK, Sheng G.  2015.  Zebra finch as a developmental model.. Genesis. 53(11):669-77.
Su S, Lim M, Kunte K.  2015.  Prey from the eyes of predators: Color discriminability of aposematic and mimetic butterflies from an avian visual perspective.. Evolution. 69(11):2985-94.
Mak S-S, Alev C, Nagai H, Wrabel A, Matsuoka Y, Honda A, Sheng G, Ladher RK.  2015.  Characterization of the finch embryo supports evolutionary conservation of the naive stage of development in amniotes.. Elife. 4:e07178.
Muthmann J-O, Amin H, Sernagor E, Maccione A, Panas D, Berdondini L, Bhalla US, Hennig MH.  2015.  Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays.. Front Neuroinform. 9:28.
Bhattacharyya U, Bhalla USingh.  2015.  Robust and Rapid Air-Borne Odor Tracking without Casting(1,2,3).. eNeuro. 2(6)
Dhanyasi N, Segal D, Shimoni E, Shinder V, Shilo B-Z, VijayRaghavan K, Schejter ED.  2015.  Surface apposition and multiple cell contacts promote myoblast fusion in Drosophila flight muscles.. J Cell Biol. 211(1):191-203.
Mukherjee O, Das G, Sen S, Dutt A, Alladi S, Ghosh A.  2015.  C9orf72 mutations may be rare in frontotemporal lobar degeneration patients in India.. Amyotroph Lateral Scler Frontotemporal Degener. :1-3.
G KP, Kuruvilla S, Mathew MK.  2015.  Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).. Plant Physiol Biochem. 97:165-74.
Raghavender US, Sowdhamini R.  2015.  Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.
Das T, Ganguly S, Sengupta S, Rao M.  2015.  Pre-yield non-affine fluctuations and a hidden critical point in strained crystals.. Sci Rep. 5:10644.
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Banerjee A, Marbach F, Anselmi F, Koh MS, Davis MB, da Silva PGarcia, Delevich K, Oyibo HK, Gupta P, Li B et al..  2015.  An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb.. Neuron. 87(1):193-207.
Dinesh KP, Vijayakumar SP, Channakeshavamurthy BH, Torsekar VR, Kulkarni NU, Shanker K.  2015.  Systematic status of Fejervarya ((Amphibia, Anura, Dicroglossidae) from South and SE Asia with the description of a new species from the Western Ghats of Peninsular India.. Zootaxa. 3999(1):79-94.
Surana S, Shenoy AR, Krishnan Y.  2015.  Designing DNA nanodevices for compatibility with the immune system of higher organisms.. Nat Nanotechnol. 10(9):741-7.
Bendtsen KMoss, Jensen MH, Krishna S, Semsey S.  2015.  The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells.. Sci Rep. 5:13910.
Pathak T, Agrawal T, Richhariya S, Sadaf S, Hasan G.  2015.  Store-Operated Calcium Entry through Orai Is Required for Transcriptional Maturation of the Flight Circuit in Drosophila.. J Neurosci. 35(40):13784-99.
Sukhwal A, Sowdhamini R.  2015.  PPCheck: A Webserver for the Quantitative Analysis of Protein-Protein Interfaces and Prediction of Residue Hotspots.. Bioinform Biol Insights. 9:141-51.
Goluguri RReddy, Udgaonkar JB.  2015.  Rise of the Helix from a Collapsed Globule during the Folding of Monellin.. Biochemistry. 54(34):5356-65.
Heilmann S, Krishna S, Kerr B.  2015.  Why do bacteria regulate public goods by quorum sensing?-How the shapes of cost and benefit functions determine the form of optimal regulation. Front Microbiol. 6:767.
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJinan, Craik DJ, Finn RD, Gloriam D, Haft DH et al..  2015.  Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.. Database (Oxford). 2015:bav063.
Saha S, Lee I-H, Polley A, Groves JT, Rao M, Mayor S.  2015.  Diffusion of GPI-anchored proteins is influenced by the activity of dynamic cortical actin.. Mol Biol Cell. 26(22):4033-45.
Baral A, Shruthi KS, Mathew MK.  2015.  Vesicular trafficking and salinity responses in plants.. IUBMB Life. 67(9):677-86.
Till SM, Asiminas A, Jackson AD, Katsanevaki D, Barnes SA, Osterweil EK, Bear MF, Chattarji S, Wood ER, Wyllie DJA et al..  2015.  Conserved hippocampal cellular pathophysiology but distinct behavioural deficits in a new rat model of FXS.. Hum Mol Genet. 24(21):5977-84.
Chattarji S, Tomar A, Suvrathan A, Ghosh S, Rahman MMostafizur.  2015.  Neighborhood matters: divergent patterns of stress-induced plasticity across the brain.. Nat Neurosci. 18(10):1364-75.
Karnawat V, Gogia S, Balaram H, Puranik M.  2015.  Differential Distortion of Purine Substrates by Human and Plasmodium falciparum Hypoxanthine-Guanine Phosphoribosyltransferase to Catalyse the Formation of Mononucleotides.. Chemphyschem. 16(10):2172-81.
Singh J, Udgaonkar JB.  2015.  Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Malhotra P, Udgaonkar JB.  2015.  Tuning Cooperativity on the Free Energy Landscape of Protein Folding.. Biochemistry. 54(22):3431-41.
Gupte TM.  2015.  Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals.. PLoS One. 10(5):e0126829.
Panas D, Amin H, Maccione A, Muthmann O, van Rossum M, Berdondini L, Hennig MH.  2015.  Sloppiness in spontaneously active neuronal networks.. J Neurosci. 35(22):8480-92.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Rao VVHemanth, Gosavi S.  2015.  Structural Perturbations Present in the Folding Cores of Interleukin-33 and Interleukin-1β Correlate to Differences in Their Function.. J Phys Chem B. 119(34):11203-14.
Viswanath B, Jose SP, Squassina A, Thirthalli J, Purushottam M, Mukherjee O, Vladimirov V, Patrinos GP, Del Zompo M, Jain S.  2015.  Cellular models to study bipolar disorder: A systematic review.. J Affect Disord. 184:36-50.
Kosmalska AJoanna, Casares L, Elosegui-Artola A, Thottacherry JJose, Moreno-Vicente R, González-Tarragó V, del Pozo MÁngel, Mayor S, Arroyo M, Navajas D et al..  2015.  Physical principles of membrane remodelling during cell mechanoadaptation.. Nat Commun. 6:7292.
Sneppen K, Semsey S, Seshasayee ASN, Krishna S.  2015.  Restriction modification systems as engines of diversity.. Front Microbiol. 6:528.
Robin VV, Vishnudas CK, Gupta P, Ramakrishnan U.  2015.  Deep and wide valleys drive nested phylogeographic patterns across a montane bird community.. Proc Biol Sci. 282(1810)
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Sreekar R, Srinivasan U, Mammides C, Chen J, Goodale UManage, Kotagama SWimalaband, Sidhu S, Goodale E.  2015.  The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India.. Sci Rep. 5:11569.
Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-Montaño B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL et al..  2015.  SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.. Database (Oxford). 2015:bav060.
Robin VV, Gupta P, Thatte P, Ramakrishnan U.  2015.  Islands within islands: two montane palaeo-endemic birds impacted by recent anthropogenic fragmentation.. Mol Ecol. 24(14):3572-84.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Hansen S, Krishna S, Semsey S, Svenningsen SLo.  2015.  Effects of Four Different Regulatory Mechanisms on the Dynamics of Gene Regulatory Cascades.. Sci Rep. 5:12186.
Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P.  2015.  RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.. J Cell Sci. 128(17):3330-44.
Harini K, Sowdhamini R.  2015.  Computational Approaches for Decoding Select Odorant-Olfactory Receptor Interactions Using Mini-Virtual Screening.. PLoS One. 10(7):e0131077.
Toussaint EFA, Morinière J, Müller CJ, Kunte K, Turlin B, Hausmann A, Balke M.  2015.  Comparative molecular species delimitation in the charismatic Nawab butterflies (Nymphalidae, Charaxinae, Polyura).. Mol Phylogenet Evol. 91:194-209.
Banerjee A, Grazon C, Nadal B, Pons T, Krishnan Y, Dubertret B.  2015.  Fast, Efficient, and Stable Conjugation of Multiple DNA Strands on Colloidal Quantum Dots.. Bioconjug Chem. 26(8):1582-9.
Halder S, Krishnan Y.  2015.  Design of ultrasensitive DNA-based fluorescent pH sensitive nanodevices.. Nanoscale. 7(22):10008-12.

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