Author Title [ Type(Asc)] Year
Journal Article
Rakshit S., Babji S., Parthiban C., Madhavan R., Adiga V., Sharon EJ, N. Kumar C, Ahmed A., Shivalingaiah S., Shashikumar N. et al..  2023.  Polyfunctional CD4 T-cells correlating with neutralising antibody is a hallmark of COVISHIELDTM and COVAXIN® induced immunity in COVID-19 exposed Indians.. NPJ Vaccines. 8(1):134.
Mukhopadhyay A, Quader S.  2022.  Pollination inaccuracy: estimating male fitness in the movement-assisted dichogamous species Clerodendrum infortunatum. Evolutionary Ecology.
Johnson MK, Kottur J, Nair DT.  2019.  A polar filter in DNA polymerases prevents ribonucleotide incorporation.. Nucleic Acids Res.
Gopurappilly R.  2021.  Pluripotent Stem Cell Derived Neurons as In Vitro Models for Studying Autosomal Recessive Parkinson's Disease (ARPD): PLA2G6 and Other Gene Loci.. Adv Exp Med Biol.
Nabais C, Pessoa D, de-Carvalho J, van Zanten T, Duarte P, Mayor S, Carneiro J, Telley IA, Bettencourt-Dias M.  2021.  Plk4 triggers autonomous de novo centriole biogenesis and maturation.. J Cell Biol. 220(5)
Chandrasegaran K, Singh A, Laha M, Quader S.  2018.  Playing it safe? Behavioural responses of mosquito larvae encountering a fish predator ETHOLOGY ECOLOGY & EVOLUTION. 30(1):70-87.
Jain D, Narayanan N, Nair DT.  2016.  Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.. J Biol Chem. 291(3):1235-42.
Subramani PA, Vartak-Sharma N, Sreekumar S, Mathur P, Nayer B, Dakhore S, Basavanna SK, Kalappa DM, Krishnamurthy RV, Mukhi B et al..  2020.  Plasmodium vivax liver stage assay platforms using Indian clinical isolates.. Malar J. 19(1):214.
R Kumar V, Shivaprasad PV.  2020.  Plant-virus-insect tritrophic interactions: insights into the functions of geminivirus virion-sense strand genes.. Proc Biol Sci. 287(1936):20201846.
Ghosh E, Venkatesan R.  2019.  Plant Volatiles Modulate Immune Responses of Spodoptera litura.. J Chem Ecol.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
G VHari Sunda, Swetha C, Basu D, Pachamuthu K, Raju S, Chakraborty T, Mosher RA, Shivaprasad PV.  2023.  Plant polymerase IV sensitizes chromatin through histone modifications to preclude spread of silencing into protein-coding domains.. Genome Res.
G Sundar VHari, Madhu A, Archana A, Shivaprasad PV.  2024.  Plant histone variants at the nexus of chromatin readouts, stress and development.. Biochim Biophys Acta Gen Subj. 1868(2):130539.
R Kumar V.  2019.  Plant Antiviral Immunity Against Geminiviruses and Viral Counter-Defense for Survival.. Front Microbiol. 10:1460.
Mathew OK, Sowdhamini R.  2016.  PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies.. Bioinform Biol Insights. 10:105-9.
Mathew OKaleeckal, Sowdhamini R.  2016.  PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization.. Bioinformation. 12(1):9-11.
Basu U, Balakrishnan SS, Janardan V, Raghu P.  2020.  A PI4KIIIα protein complex is required for cell viability during Drosophila wing development.. Dev Biol. 462(2):208-222.
Ghosh A, Venugopal A, Shinde D, Sharma S, Krishnan M, Mathre S, Krishnan H, Saha S, Raghu P.  2023.  PI3P-dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase.. Life Sci Alliance. 6(9)
Dwivedi D, Bhalla US.  2021.  Physiology and Therapeutic Potential of SK, H, and M Medium AfterHyperPolarization Ion Channels.. Front Mol Neurosci. 14:658435.
Vijayakrishnan S, Kumar MAnanda, Umapathy G, Kumar V, Sinha A.  2018.  Physiological stress responses in wild Asian elephants Elephas maximus in a human-dominated landscape in the Western Ghats, southern India.. Gen Comp Endocrinol. 266:150-156.
Kosmalska AJoanna, Casares L, Elosegui-Artola A, Thottacherry JJose, Moreno-Vicente R, González-Tarragó V, del Pozo MÁngel, Mayor S, Arroyo M, Navajas D et al..  2015.  Physical principles of membrane remodelling during cell mechanoadaptation.. Nat Commun. 6:7292.
Yang X, Heinemann M, Howard J, Huber G, Iyer-Biswas S, Le Treut G, Lynch M, Montooth KL, Needleman DJ, Pigolotti S et al..  2021.  Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.. Proc Natl Acad Sci U S A. 118(26)
Agarwal I, Ramakrishnan U.  2017.  A phylogeny of open-habitat lizards (Squamata: Lacertidae: Ophisops) supports the antiquity of Indian grassy biomes. JOURNAL OF BIOGEOGRAPHY . 44(9):2021-2032.
Lajmi A, Bansal R, Giri VB, Karanth P.  2019.   Phylogeny and biogeography of the endemic Hemidactylus geckos of the Indian subregion suggest multiple dispersals from Peninsular India to Sri Lanka. Zoological Journal of the Linnean Society. 186(186):286–301.
Hime PM, Lemmon AR, Lemmon ECMoriarty, Prendini E, Brown JM, Thomson RC, Kratovil JD, Noonan BP, R Pyron A, Peloso PLV et al..  2021.  Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life.. Syst Biol. 70(1):49-66.
Maddison WP, Beattie I, Marathe K, Ng PYC, Kanesharatnam N, Benjamin SP, Kunte K.  2020.  A phylogenetic and taxonomic review of baviine jumping spiders (Araneae, Salticidae, Baviini).. Zookeys. 1004:27-97.
Nagpal S, Nair DT.  2021.  The PHP domain of PolX from Staphylococcus aureus aids high fidelity DNA synthesis through the removal of misincorporated deoxyribo-, ribo- and oxidized nucleotides.. Sci Rep. 11(1):4178.
Kim S, Kalappurakkal JM, Mayor S, Rosen MK.  2019.  Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction.. Mol Biol Cell. :mbcE18120823.
Sidhanth C, Bindhya S, Krishnapriya S, Manasa P, Shabna A, Alifia J, Patole C, Kumar V, Garg M, Ganesan TS.  2022.  Phosphoproteome of signaling by ErbB2 in ovarian cancer cells.. Biochim Biophys Acta Proteins Proteom. :140768.
Cockcroft S, Raghu P.  2018.  Phospholipid transport protein function at organelle contact sites.. Curr Opin Cell Biol. 53:52-60.
Thakur R, Panda A, Coessens E, Raj N, Yadav S, Balakrishnan S, Zhang Q, Georgiev P, Basak B, Pasricha R et al..  2016.  Phospholipase D activity couples plasma membrane endocytosis with retromer dependent recycling.. Elife. 5
Padinjat R, Joseph A, Krishnan H, Singh P, Saha S.  2019.  Phosphoinositides: Regulators of Nervous System Function in Health and Disease. FRONTIERS IN MOLECULAR NEUROSCIENCE. 12
Balakrishnan SS, Basu U, Raghu P.  2015.  Phosphoinositide signalling in Drosophila.. Biochim Biophys Acta. 1851(6):770-84.
Kamalesh K, Trivedi D, Toscano S, Sharma S, Kolay S, Raghu P.  2017.  Phosphatidylinositol 5-phosphate 4-kinase regulates early endosomal dynamics during clathrin-mediated endocytosis.. J Cell Sci.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.  2019.  Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Saha S, Prakash V, Halder S, Chakraborty K, Krishnan Y.  2015.  A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells.. Nat Nanotechnol. 10(7):645-51.
Sanjenbam P, Buddidathi R, Venkatesan R, Shivaprasad PV, Agashe D.  2020.  Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India.. PLoS One. 15(2):e0228550.
Bangal P, Sridhar H, Shanker K.  2021.  Phenotypic Clumping Decreases With Flock Richness in Mixed-Species Bird Flocks. FRONTIERS IN ECOLOGY AND EVOLUTION. (537816)
Das A, Polley A, Rao M.  2016.  Phase Segregation of Passive Advective Particles in an Active Medium.. Phys Rev Lett. 116(6):068306.
Murata S, Brockmann A, Tanimura T.  2017.  Pharyngeal stimulation with sugar triggers local searching behavior in Drosophila.. J Exp Biol.
Ghosh E, Varshney R, Venkatesan R.  2021.  Performance of larval parasitoid, Bracon brevicornis on two Spodoptera hosts: implication in bio-control of Spodoptera frugiperda. JOURNAL OF PEST SCIENCE.
Varma V., Ratnam J., Viswanathan V., Osuri A.M, Biesmeijer J.C, Madhusudan M.D, Sankaran M..  2015.  Perceptions of priority issues in the conservation of biodiversity and ecosystems in India. Biological Conservation . 187:201-211.
Jobin V, Das A, Harikrishnan CP, Chanda R, Lawrence S, Robin VV.  2023.  Patterns of understory invasion in invasive timber stands of a tropical sky island.. Ecol Evol. 13(4):e9995.
Das AA, Ratnam J, Jathanna D.  2023.  Patterns and consequences of invasion of tropical montane forests by Cestrum aurantiacum Lindl. in the Western Ghats. FRONTIERS IN ECOLOGY AND EVOLUTION .
Mayor S, Pagano RE.  2007.  Pathways of clathrin-independent endocytosis.. Nat Rev Mol Cell Biol. 8(8):603-12.
Sabareesan AT, Udgaonkar JB.  2016.  Pathogenic mutations within the disordered palindromic region of the prion protein induce structure therein and accelerate the formation of misfolded oligomers.. J Mol Biol.
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.  2016.  The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Khan I, Prakash A, Agashe D.  2019.  Pathogen susceptibility and fitness costs explain variation in immune priming across natural populations of flour beetles.. J Anim Ecol.
Bhattacharyya T, Nayak S, Goswami S, Gadiyaram V, Mathew OK, Sowdhamini R.  2022.  PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe.. Database (Oxford). 2022
Ghosh P, Bhattacharyya T, Mathew OK, Sowdhamini R.  2019.  PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.. Database (Oxford). 2019
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.  2016.  PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Moulick R, Das R, Udgaonkar JB.  2015.  Partially Unfolded Forms of the Prion Protein Populated under Misfolding-promoting Conditions: CHARACTERIZATION BY HYDROGEN EXCHANGE MASS SPECTROMETRY AND NMR.. J Biol Chem. 290(42):25227-40.
Consortium ICGC/TCGAPan-Cancer, Sabarinathan R, al et.  2020.  Pan-cancer Analysis of Whole Genomes. Nature. 578(7793):82-93.
Pincha N, Hajam EYousaf, Badarinath K, Batta SPrakash Ra, Masudi T, Dey R, Andreasen P, Kawakami T, Samuel R, George R et al..  2018.  PAI1 mediates fibroblast-mast cell interactions in skin fibrosis.. J Clin Invest.
Yadahalli S, Gosavi S.  2017.  Packing energetics determine the folding routes of the RNase-H proteins.. Phys Chem Chem Phys.
Ghosh E, Sasidharan A, Ode PJ, Venkatesan R.  2022.  Oviposition Preference and Performance of a Specialist Herbivore Is Modulated by Natural Enemies, Larval Odors, and Immune Status.. J Chem Ecol.
Pörtner H-O, Scholes RJ, Arneth A, Barnes DKA, Burrows MT, Diamond SE, Duarte CM, Kiessling W, Leadley P, Managi S et al..  2023.  Overcoming the coupled climate and biodiversity crises and their societal impacts.. Science. 380(6642):eabl4881.
Jethva PN, Udgaonkar JB.  2018.  The Osmolyte TMAO Modulates Protein Folding Cooperativity by Altering Global Protein Stability.. Biochemistry.
Reynolds AM, Reynolds DR, Sane SP, Hu G, Chapman JW.  2016.  Orientation in high-flying migrant insects in relation to flows: mechanisms and strategies.. Philos Trans R Soc Lond B Biol Sci. 371(1704)
Ramakrishnan N, Ipsen JH, Rao M, Kumar PBSunil.  2015.  Organelle morphogenesis by active membrane remodeling.. Soft Matter. 11(12):2387-93.
Thattai M.  2017.  Organelle acidification: an ancient cellular leak detector.. BMC Biol. 15(1):51.
Mitra R, Richhariya S, Hasan G.  2024.  Orai-mediated calcium entry determines activity of central dopaminergic neurons by regulation of gene expression.. Elife. 12
Cherian P, Krishna S, Menon GI.  2021.  Optimizing testing for COVID-19 in India.. PLoS Comput Biol. 17(7):e1009126.
Arvindekar S, Pathak AS, Majila K, Viswanath S.  2024.  Optimizing representations for integrative structural modeling using Bayesian model selection.. Bioinformatics. 40(3)
Farooq U, Notani D.  2021.  Optimized protocol to create deletion in adherent cell lines using CRISPR/Cas9 system.. STAR Protoc. 2(4):100857.
Nair J, Pragadheesh VS, Karpe SD, Ramakrishnan U, Olsson SB.  2018.  An optimized protocol for large‐scale in situ sampling and analysis of volatile organic compounds . Ecology and Evolution. 8(11):5924-5936.
Nair J, Sanmugam PV, Karpe SD, Ramakrishnan U, Olsson SB.  2018.  An optimized protocol for large-scale in situ sampling and analysis of volatile organic compounds. Ecology and Evolution. 8(11):59242-5935.
Dhall JKaur, Kasturacharya N, Pandit A, Cp L.  2023.  Optimized protocol for assay for transposase-accessible chromatin by sequencing (ATAC-seq) from Drosophila melanogaster brain tissue.. STAR Protoc. 4(2):102153.
Arnillas CAlberto, Borer ET, Seabloom EW, Alberti J, Báez S, Bakker JD, Boughton EH, Buckley YM, Bugalho MNuno, Donohue I et al..  2021.  Opposing community assembly patterns for dominant and nondominant plant species in herbaceous ecosystems globally.. Ecol Evol. 11(24):17744-17761.
Arnillas CAlberto, Borer E, Seabloom E, Alberti J, Báez S, Bakker J, Boughton E, Buckley Y, Bugalho MNuno, Donohue I et al..  2021.  Opposing community assembly patterns for dominant and jonnondominant plant species in herbaceous ecosystems globally. ECOLOGY AND EVOLUTION .
Srivathsa A, Majgaonkar I, Sharma S, Singh P, Punjabi GA, Chawla MM, Banerjee A.  2020.  Opportunities for prioritizing and expanding conservation enterprise in India using a guild of carnivores as flagships. ENVIRONMENTAL RESEARCH LETTERS. 15(6)
Warrit N, Ascher J, Basu P, Belavadi V, Brockmann A, al et.  2023.  Opportunities and challenges in Asian bee research and conservation. BIOLOGICAL CONSERVATION . 285:110173.
Bawa KS, Nawn N, Chellam R, Krishnaswamy J, Mathur V, Olsson SB, Pandit N, Rajagopal P, Sankaran M, R Shaanker U et al..  2020.  Opinion: Envisioning a biodiversity science for sustaining human well-being.. Proc Natl Acad Sci U S A.
Joshi S, Agashe D.  2020.  Ontogenic colour change, survival, and mating in the damselfly Agriocnemis pygmaea Rambur (Insecta: Odonata). ECOLOGICAL ENTOMOLOGY.
Parchure A, Vyas N, Ferguson C, Parton RG, Mayor S.  2015.  Oligomerization and endocytosis of Hedgehog is necessary for its efficient exovesicular secretion.. Mol Biol Cell. 26(25):4700-17.
Gupta P, Albeanu DF, Bhalla US.  2015.  Olfactory bulb coding of odors, mixtures and sniffs is a linear sum of odor time profiles.. Nat Neurosci. 18(2):272-81.
Gupta P, Bhalla US.  2016.  Olfaction: Minority odors get equal say.. Elife. 5
Adurthi S, Kumar MM, Vinodkumar HS, Mukherjee G, Krishnamurthy H, K Acharya K, Bafna UD, Uma DK, Abhishekh B, Krishna S et al..  2017.  Oestrogen Receptor-α binds the FOXP3 promoter and modulates regulatory T-cell function in human cervical cancer.. Sci Rep. 7(1):17289.
Saxena N, Natesan D, Sane SP.  2018.  Odor source localization in complex visual environments by fruit flies.. J Exp Biol. 221(Pt 2)
Sujkowski A, Ramesh D, Brockmann A, Wessells R.  2017.  Octopamine Drives Endurance Exercise Adaptations in Drosophila.. Cell Rep. 21(7):1809-1823.
Surana P, Das R.  2016.  Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR.. Protein Sci.
Bhatia S, Krishnamoorthy G, Dhar D, Udgaonkar JB.  2019.  Observation of Continuous Contraction and a Metastable Misfolded State during the Collapse and Folding of a Small Protein.. J Mol Biol.
Devi MR, Ummalyma SB, Brockmann A, Raina V, Rajashekar Y.  2023.  Nutritional properties of giant water bug, a traditional edible insect species of North-East India.. Bioengineered. 14(1):2252669.
Borer ET, Harpole WS, Adler PB, Arnillas CA, Bugalho MN, Cadotte MW, Caldeira MC, Campana S, Dickman CR, Dickson TL et al..  2020.  Nutrients cause grassland biomass to outpace herbivory.. Nat Commun. 11(1):6036.
Ebeling A, Strauss AT, Adler PB, Arnillas CA, Barrio IC, Biederman LA, Borer ET, Bugalho MN, Caldeira MC, Cadotte MW et al..  2021.  Nutrient enrichment increases invertebrate herbivory and pathogen damage in grasslands. JOURNAL OF ECOLOGY .
Varma V, Sankaran M.  2021.  Nutrient deposition enhances post-fire survival in non-N-fixing savanna tree seedlings. JOURNAL OF VEGETATION SCIENCE. 32(2):e13020.
Singh P, Seshasayee ASai Narain.  2017.  Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.. Methods Mol Biol. 1624:85-97.
Venkatasubramani JPriya, Subramanyam P, Pal R, Reddy BK, Srinivasan DJeyalakshm, Chattarji S, Iossifov I, Klann E, Bhattacharya A.  2020.  N-terminal variant Asp14Asn of the human p70 S6 Kinase 1 enhances translational signaling causing different effects in developing and mature neuronal cells.. Neurobiol Learn Mem. 171:107203.
Ray S, Chintaluri C, Bhalla US, Wójcik DK.  2016.  NSDF: Neuroscience Simulation Data Format.. Neuroinformatics. 14(2):147-67.
Mudgal R, Sandhya S, Kumar G, Sowdhamini R, Chandra NR, Srinivasan N.  2015.  NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.. Nucleic Acids Res. 43(Database issue):D300-5.
Nair A, Shivaprasad PV.  2023.  Novel regulators of mitochondrial genome integrity.. J Biosci. 48
Negi H, Reddy PPurushotha, Vengayil V, Patole C, Laxman S, Das R.  2020.  A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes.. Biochem J. 477(12):2193-2219.
Chahwala FD, Singh D, R Kumar V, Rathore S, Yadav BK, Singh B, Singh AK.  2021.  A novel monopartite begomovirus and satellites associated with yellow mosaic disease of Sida spp. in India.. Arch Virol. 166(1):299-302.
Ghosh A, Sharma S, Shinde D, Ramya V, Raghu P.  2019.  A novel mass assay to measure phosphatidylinositol-5-phosphate from cells and tissues.. Biosci Rep. 39(10)
Booker SA, Kind PC.  2021.  Novel insights in plasticity and learning impairments in Fragile X Syndrome.. Brain Res Bull.
Mohapatra PP, Khandekar A, Dutta SK, Mahapatra C, Agarwal I.  2020.  A novel, diminutive Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae from a sacred grove in Odisha, eastern India. ZOOTAXA. 4852(4):485-499.
Naik S, MacFarlane M, Sarin A.  2015.  Notch4 Signaling Confers Susceptibility to TRAIL-Induced Apoptosis in Breast Cancer Cells.. J Cell Biochem. 116(7):1371-80.
Marcel N, Sarin A.  2016.  Notch1 regulated autophagy controls survival and suppressor activity of activated murine T-regulatory cells.. Elife. 5
Saini N, Lakshminarayanan S, Kundu P, Sarin A.  2022.  Notch1 Modulation of Cellular Calcium Regulates Mitochondrial Metabolism and Anti-Apoptotic Activity in T-Regulatory Cells.. Front Immunol. 13:832159.

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