Author [ Title] Type Year
Udgaonkar JB. 2019. Introducing the Mechanical Forces in Biochemistry Special Issue.. Biochemistry. 58(47):4655-4656.
Mahita J, Sowdhamini R. 2018. Investigating the effect of key mutations on the conformational dynamics of Toll-like receptor dimers through molecular dynamics simulations and protein structure networks.. Proteins.
Galbraith DA, Fuller ZL, Ray AM, Brockmann A, Frazier M, Gikungu MW, J Martinez FIturralde, Kapheim KM, Kerby JT, Kocher SD et al.. 2018. Investigating the viral ecology of global bee communities with high-throughput metagenomics.. Sci Rep. 8(1):8879.
Thillaiappan NBabu, Chakraborty P, Hasan G, Taylor CW. 2019. IP3 receptors and Ca2+ entry. Biochim Biophys Acta Mol Cell Res. 1866(7):1092-1100.
Megha M, Hasan G. 2017. IP3R mediated Ca(2+) release regulates protein metabolism in Drosophila neuroendocrine cells: implications for development under nutrient stress.. Development.
Robin VV, Gupta P, Thatte P, Ramakrishnan U. 2015. Islands within islands: two montane palaeo-endemic birds impacted by recent anthropogenic fragmentation.. Mol Ecol. 24(14):3572-84.
Veetil RT, Malhotra N, Dubey A, Seshasayee ASai Narain. 2020. Laboratory Evolution Experiments Help Identify a Predominant Region of Constitutive Stable DNA Replication Initiation.. mSphere. 5(1)
Balebail S, Raja SK, Sane SP. 2019. Landing maneuvers of houseflies on vertical and inverted surfaces.. PLoS One. 14(8):e0219861.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD. 2015. Landscape scale habitat suitability modelling of bats in the Western Ghats of India: Bats like something in their tea. Biological Conservation. 191:529–536.
Panthi S, Khanal G, Acharya KPrasad, Aryal A, Srivathsa A. 2017. Large anthropogenic impacts on a charismatic small carnivore: Insights from distribution surveys of red panda Ailurus fulgens in Nepal.. PLoS One. 12(7):e0180978.
Augustine DJ, Wigley BJ, Ratnam J, Kibet S, Nyangito M, Sankaran M. 2019. Large herbivores maintain a two-phase herbaceous vegetation mosaic in a semi-arid savanna.. Ecol Evol. 9(22):12779-12788.
Velho N, Srinivasan U, Singh P, Laurance WF. 2016. Large mammal use of protected and community-managed lands in a biodiversity hotspot. ANIMAL CONSERVATION. 19(2):199-208.
Agashe D, Sane M, Phalnikar K, Diwan GD, Habibullah A, Martinez-Gomez NCecilia, Sahasrabuddhe V, Polachek W, Wang J, Chubiz LM et al.. 2016. Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.. Mol Biol Evol.
Patankar V, D'Souza E, Marathe A. 2019. Latitude and live coral cover independently affect Chaetodontid and Pomacanthid fish community distribution in the Andaman and Nicobar archipelago, India. MARINE BIODIVERSITY. 49(1):235-245.
Wigley BJ, Slingsby JA, Diaz S, Bond WJ, Fritz H, Coetsee C. 2016. Leaf traits of African woody savanna species across climate and soil fertility gradients: evidence for conservative versus acquisitive resource-use strategies. Journal of Ecology.
Lichtenstein L, Brockmann A, Spaethe J. 2019. Learning of monochromatic stimuli in Apis cerana and Apis mellifera by means of PER conditioning.. J Insect Physiol. 114:30-34.
Kshettry A, Vaidyanathan S, Athreya V. 2017. Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India.. PLoS One. 12(5):e0177013.
Janakiraman D. 2017. Lévy flights in the presence of a point sink of finite strength.. Phys Rev E. 95(1-1):012154.
Saravanan B, Soota D, Islam Z, Majumdar S, Mann R, Meel S, Farooq U, Walavalkar K, Gayen S, Singh AKumar et al.. 2020. Ligand dependent gene regulation by transient ERα clustered enhancers.. PLoS Genet. 16(1):e1008516.
Hebbar S, Khandelwal A, Jayashree R, Hindle SJ, Chiang YNing, Yew JY, Sweeney ST, Schwudke D. 2017. Lipid metabolic perturbation is an early-onset phenotype in adult spinster mutants: a Drosophila model for lysosomal storage disorders.. Mol Biol Cell. 28(26):3728-3740.
Paul P, Iyer S, Nadella RKumar, Nayak R, Chellappa AS, Ambardar S, Sud R, Sukumaran SK, Purushottam M, Jain S et al.. 2020. Lithium response in bipolar disorder correlates with improved cell viability of patient derived cell lines.. Sci Rep. 10(1):7428.
Lee I-H, Saha S, Polley A, Huang H, Mayor S, Rao M, Groves JT. 2015. Live cell plasma membranes do not exhibit a miscibility phase transition over a wide range of temperatures.. J Phys Chem B. 119(12):4450-9.
Chimthanawala A, Badrinarayanan A. 2019. Live-Cell Fluorescence Imaging of RecN in Caulobacter crescentus Under DNA Damage.. Methods Mol Biol. 2004:239-250.
Jog K, Sule M, Bopardikar I, Patankar V, Sutaria D. 2018. Living with dolphins: Local ecological knowledge and perceptions of small cetaceans along the Sindhudurg coastline of Maharashtra, India. MARINE MAMMAL SCIENCE . 34 (2):488-498.
Gonzalez-Perez A, Sabarinathan R, Lopez-Bigas N. 2019. Local Determinants of the Mutational Landscape of the Human Genome.. Cell. 177(1):101-114.
Hautier Y, Isbell F, Borer ET, Seabloom EW, W Harpole S, Lind EM, MacDougall AS, Stevens CJ, Adler PB, Alberti J et al.. 2018. Local loss and spatial homogenization of plant diversity reduce ecosystem multifunctionality.. Nat Ecol Evol. 2(1):50-56.
Aggarwal A, Reichert H, VijayRaghavan K. 2019. A locomotor assay reveals deficits in heterozygous Parkinson's disease model and proprioceptive mutants in adult .. Proc Natl Acad Sci U S A.
Kuklin EA, Alkins S, Bakthavachalu B, Genco MC, Sudhakaran I, K Raghavan V, Ramaswami M, Griffith LC. 2017. The long 3'UTR mRNA of CaMKII is essential for translation-dependent plasticity of spontaneous release in Drosophila melanogaster.. J Neurosci.
Sudhakaran IP, Ramaswami M. 2017. Long-term memory consolidation: The role of RNA-binding proteins with prion-like domains.. RNA Biol. 14(5):568-586.
Das S, Swetha C, Pachamuthu K, Nair A, Shivaprasad PV. 2020. Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.. Plant Reprod. 33(1):59-73.
Lupton C, Sengupta M, Cheng R-K, Chia J, Thirumalai V, Jesuthasan S. 2017. Loss of the Habenula Intrinsic Neuromodulator Kisspeptin1 Affects Learning in Larval Zebrafish.. eNeuro. 4(3)
Thatte P, Joshi A, Vaidyanathan S, Landguth E, Ramakrishnan U. 2018. Maintaining tiger connectivity and minimizing extinction into the next century: Insights from landscape genetics and spatially-explicit simulations . BIOLOGICAL CONSERVATION . 218:181-191.
Ashe S, Yadav S. 2019. Maintenance of Rhodopsin levels in Drosophila photoreceptor and phototransduction requires Protein Kinase D.. Fly (Austin).
Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV. 2018. Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.. Plant Cell.
Garg KM, Chattopadhyay B, Doss DPSwami, Kumar AKVinoth, Kandula S, Ramakrishnan U. 2015. Males and females gain differentially from sociality in a promiscuous fruit bat Cynopterus sphinx.. PLoS One. 10(3):e0122180.
Vijayasarathy M, Balaram P. 2018. Mass spectrometric identification of bromotryptophan containing conotoxin sequences from the venom of C. amadis.. Toxicon. 144:68-74.
Ramesh D, Brockmann A. 2019. Mass Spectrometric Quantification of Arousal Associated Neurochemical Changes in Single Honey Bee Brains and Brain Regions.. ACS Chem Neurosci. 10(4):950-1959.
Agrawal T, Hasan G. 2015. Maturation of a central brain flight circuit in Drosophila requires Fz2/Ca²⁺ signaling.. Elife. 4
Rupprecht J-F, A Vishen S, Shivashankar GV, Rao M, Prost J. 2018. Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus.. Phys Rev Lett. 120(9):098001.
Arora R, Vats A, Chimankar V. 2019. MCV Truncated Large T antigen interacts with BRD4 in tumors. Matters.
Gopurappilly R, Deb BKumar, Chakraborty P, Hasan G. 2019. Measurement of Store-Operated Calcium Entry in Human Neural Cells: From Precursors to Differentiated Neurons.. Methods Mol Biol. 2029:257-271.
Deora T, Gundiah N, Sane SP. 2017. Mechanics of the thorax in flies.. J Exp Biol. 220(Pt 8):1382-1395.
Sabareesan AThody, Mathew MK, Udgaonkar JB. 2018. Mechanism of aggregation and membrane interactions of mammalian prion protein.. Biochim Biophys Acta.
Aghera NK, Prabha J, Tandon H, Chattopadhyay G, Vishwanath S, Srinivasan N, Varadarajan R. 2020. Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase.. Structure. 28(5):562-572.e4.
Jayanth N, Puranik M. 2017. Mechanism of Discrimination of 8-Oxoguanosine versus Guanosine by Escherichia coli Fpg.. J Phys Chem B.
Kumar H, Udgaonkar JB. 2018. Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Kumar H, Udgaonkar JB. 2019. Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Raghavender US, Sowdhamini R. 2015. Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DSelvi, Mukundan N, Jambekar A, Thangaraj K et al.. 2015. Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies.. J Biol Chem. 290(11):7003-15.
Kumar S, M Venkatesha A, Lall S, Prakash S, Balaram P. 2020. Mechanistic Insights into an Unusual Side-Chain-Mediated N-C Bond Cleavage under Collision-Induced Dissociation Conditions in the Disulfide-Containing Peptide Conopressin.. J Am Soc Mass Spectrom. 31(5):1083-1092.
Thottacherry JJose, Kosmalska AJoanna, Kumar A, Vishen ASingh, Elosegui-Artola A, Pradhan S, Sharma S, Singh PP, Guadamillas MC, Chaudhary N et al.. 2018. Mechanochemical feedback control of dynamin independent endocytosis modulates membrane tension in adherent cells.. Nat Commun. 9(1):4217.
Sant HH, Sane SP. 2018. The Mechanosensory-Motor Apparatus of Antennae in the Oleander hawk moth (Daphnis nerii, Lepidoptera).. J Comp Neurol.
Barnosky AD, Hadly EA, Gonzalez P, Head J, P Polly D, A Lawing M, Eronen JT, Ackerly DD, Alex K, Biber E et al.. 2017. Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems.. Science. 355(6325)
Arora R, Rekhi B, Chandrani P, Krishna S, Dutt A. 2019. Merkel cell polyomavirus is implicated in a subset of Merkel cell carcinomas, in the Indian subcontinent.. Microb Pathog. :103778.
Goyal A. 2018. Metabolic adaptations underlying genome flexibility in prokaryotes.. PLoS Genet. 14(10):e1007763.
Varahan S, Walvekar A, Sinha V, Krishna S, Laxman S. 2019. Metabolic constraints drive self-organization of specialized cell groups.. Elife. 8
Melvin P, Bankapalli K, D'Silva P, Shivaprasad PV. 2017. Methylglyoxal detoxification by a DJ-1 family protein provides dual abiotic and biotic stress tolerance in transgenic plants.. Plant Mol Biol.
Thorpe CJ, Lewis TR, Kulkarni S, Watve A, Gaitonde N, Pryce D, Davies L, Bilton DT, Knight ME. 2018. Micro-habitat distribution drives patch quality for sub-tropical rocky plateau amphibians in the northern Western Ghats, India.. PLoS One. 13(3):e0194810.
Goluguri RReddy, Udgaonkar JB. 2016. Microsecond rearrangements of hydrophobic clusters in an initially collapsed globule prime structure formation during the folding of a small protein.. J Mol Biol.
Goluguri RReddy, Sen S, Udgaonkar J. 2019. Microsecond sub-domain motions and the folding and misfolding of the mouse prion protein.. Elife. 8
Deshmukh R, Baral S, Gandhimathi A, Kuwalekar M, Kunte K. 2018. Mimicry in butterflies: co-option and a bag of magnificent developmental genetic tricks.. Wiley Interdiscip Rev Dev Biol. 7(1)
Krishna S, Laxman S. 2018. A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.. Mol Biol Cell. :mbcE18010017.
Tirumalai V, Swetha C, Nair A, Pandit A, Shivaprasad PV. 2019. miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.. J Exp Bot.
Arya D, Sachithanandan SP, Ross C, Palakodeti D, Li S, Krishna S. 2017. MiRNA182 regulates percentage of myeloid and erythroid cells in chronic myeloid leukemia.. Cell Death Dis. 8(1):e2547.
Kabir S, Venkatesan R, Thaker M. 2019. Mismatch in receiver responses to multimodal signals in a diurnal gecko. Animal Behaviour. 147:115-123.
Gupte TM. 2015. Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals.. PLoS One. 10(5):e0126829.
Goodale E, Sridhar H, Sieving KE, Bangal P, Z GJColorado, Farine DR, Heymann EW, Jones HH, Krams I, Martínez AE et al.. 2020. Mixed company: a framework for understanding the composition and organization of mixed-species animal groups.. Biol Rev Camb Philos Soc.
Rasquinha DN, Sankaran M. 2016. Modelling biome shifts in the Indian subcontinent under scenarios of future climate change . Current Science. 111(1):147-156.
Mogre A, Veetil RT, Seshasayee ASai Narain. 2017. Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli.. G3 (Bethesda). 7(12):3955-3966.
Jethva PN, Udgaonkar JB. 2017. Modulation of the Extent of Cooperative Structural Change During Protein Folding by Chemical Denaturant.. J Phys Chem B. 121(35):8263-8275.
Kumar H, Singh J, Kumari P, Udgaonkar JB. 2017. Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
Javali A, Lakshmanan V, Palakodeti D, Sambasivan R. 2020. Modulation of β-catenin levels regulates cranial neural crest patterning and dispersal into first pharyngeal arch.. Dev Dyn.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR. 2019. Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Das S, Hegde A, Shivaprasad PV. 2018. Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India.. Arch Virol.
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G. 2016. Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. METHODS AND APPLICATIONS IN FLUORESCENCE. 4(1)
Lajmi A, Giri VB, K. Karanth P. 2016. Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). ORGANISMS DIVERSITY & EVOLUTION. 16(3):659-677.
Mutt E, Sowdhamini R. 2016. Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Singh J, Udgaonkar JB. 2015. Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Gangadharan B, Sunitha MS, Mukherjee S, Chowdhury RRoy, Haque F, Sekar N, Sowdhamini R, Spudich JA, Mercer JA. 2017. Molecular mechanisms and structural features of cardiomyopathy-causing troponin T mutants in the tropomyosin overlap region.. Proc Natl Acad Sci U S A.
Gandhimathi A, Sowdhamini R. 2016. Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.
Marshall DC, Moulds M, Hill KBR, Price BW, Wade EJ, Owen CL, Goemans G, Marathe K, Sarkar V, et al.. 2018. A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification. ZOOTAXA. 4424(1):1-64.
Habibullah BIsmail, Tripathi V, Surana P, Das R. 2020. Monitoring protein ubiquitination and SUMOylation in real-time by NMR.. Chem Commun (Camb). 56(49):6735-6738.
Sengupta I, Udgaonkar J. 2019. Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Parma V, Ohla K, Veldhuizen MG, Niv MY, Kelly CE, Bakke AJ, Cooper KW, Bouysset C, Pirastu N, Dibattista M et al.. 2020. More than smell - COVID-19 is associated with severe impairment of smell, taste, and chemesthesis.. Chem Senses.
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J. 2017. Motor control of Drosophila feeding behavior.. Elife. 6
Jayakumar S, Richhariya S, Deb BKumar, Hasan G. 2018. A multi-component neuronal response encodes the larval decision to pupariate upon amino acid starvation.. J Neurosci.
Fox SJohn, Li J, Tan YSing, Nguyen MN, Pal A, Ouaray Z, Yadahalli S, Kannan S. 2016. The Multifaceted Roles of Molecular Dynamics Simulations in Drug Discovery.. Curr Pharm Des. 22(23):3585-600.
Huang Z-F, Chiba H, Jin J, Kizhakke AG, Wang M, Kunte K, Fan X. 2019. A multilocus phylogenetic framework of the tribe Aeromachini (Lepidoptera: Hesperiidae: Hesperiinae), with implications for taxonomy and biogeography. Systematic Entomology.
Sabarinathan R, Anthon C, Gorodkin J, Seemann SE. 2018. Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures.. Genes (Basel). 9(12)
Goyal A, Dubinkina V, Maslov S. 2018. Multiple stable states in microbial communities explained by the stable marriage problem.. ISME J.
Pillai AAS, Anoop A, Prasad V. 2018. Multi-proxy evidence for an arid shift in the climate and vegetation of the Banni grasslands of western India during the mid- to late-Holocene. Holocene. 28(7):10572-1070.
Brocke E, Djurfeldt M, Bhalla US, Kotaleski JHellgren, Hanke M. 2017. Multirate method for co-simulation of electrical-chemical systems in multiscale modeling.. J Comput Neurosci.
Francis B, Mathew M, Arigovindan M.. 2018. Multiresolution-based weighted regularization for denoised image interpolation from scattered samples with application to confocal microscopy . Journal of the Optical Society of America A. 35(10):1749-1759.
Upadhyay N, Kar D, Mahajan BDeepak, Nanda S, Rahiman R, Panchakshari NAbhay, Bhagavatula L, Datta S. 2019. The multitasking abilities of MATE transporters in plants.. J Exp Bot.
Chakraborty S, Deb BK, Chorna T, Konieczny V, Taylor CW, Hasan G. 2016. Mutant IP3 receptors attenuate store-operated Ca2+ entry by destabilizing STIM-Orai interactions in Drosophila neurons.. J Cell Sci.
Nandy P, Chib S, Seshasayee A. 2020. A Mutant RNA Polymerase Activates the General Stress Response, Enabling Escherichia coli Adaptation to Late Prolonged Stationary Phase. mSphere. 5(5)