Author Title [ Type(Asc)] Year
Journal Article
Sengupta I, Bhate SH, Das R, Udgaonkar JB.  2017.  Salt-mediated oligomerization of the mouse prion protein monitored by real time NMR.. J Mol Biol.
Baral A, Irani NG, Fujimoto M, Nakano A, Mayor S, Mathew MK.  2015.  Salt-induced remodeling of spatially restricted clathrin-independent endocytic pathways in Arabidopsis root.. Plant Cell. 27(4):1297-315.
Chakraborty P, Chattarji S, Jeanneteau F.  2021.  A salience hypothesis of stress in PTSD.. Eur J Neurosci.
Puri M, Srivathsa A, Karanth KK, Patel I, N. Kumar S.  2023.  Safe space in the woods: Mechanistic spatial models for predicting risks of human-bear conflicts in India. BIOTROPICA . 55(2):504-516.
Moulick R, Goluguri RReddy, Udgaonkar JB.  2019.  Ruggedness in the Free Energy Landscape Dictates Misfolding of the Prion Protein.. J Mol Biol.
Shetty R, Joshi D, Jain M, Vasudevan M, Paul JChrysolite, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K et al..  2018.  Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.. Sci Rep. 8(1):5632.
Ghosh P, Mathew OK, Sowdhamini R.  2016.  RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.. BMC Bioinformatics. 17(1):411.
Saha P, Nandi AK, Unnikrishnan S, Shilpa MC, Shukla SP, Mandal S, Mitra A, Gadagkar R.  2018.  A Route to Direct Fitness: Natural and Experimentally Induced Queen Succession in the Tropical Primitively Eusocial Wasp Ropalidia marginata . JOURNAL OF INSECT BEHAVIOR . 31(1):54-65.
Wigley BJ, Staver C, Zytkowiak R, Jagodzinski AM, Wigley-Coetsee C.  2019.  Root trait variation in African savannas. Plant and Soil. 441(1-2):555–565.
Da W., Rana S.K, Bawa K., Kunte K., Wang Z..  2023.  Roof of the world: Home and border in the genomic era. Molecular Ecology Resources.
Dahake A, Stöckl AL, Foster JJ, Sane SP, Kelber A.  2018.  The roles of vision and antennal mechanoreception in hawkmoth flight control.. Elife. 7
Jayakumar JAnand Kuma, Panicker MM.  2021.  The roles of serotonin in cell adhesion and migration, and cytoskeletal remodeling.. Cell Adh Migr. 15(1):261-271.
Himeoka Y, Kirkegaard JB, Mitarai N, Krishna S.  2024.  Roles of network topology in the relaxation dynamics of simple chemical reaction network models.. Sci Rep. 14(1):22187.
Gower DJ, Agarwal I, K. Karanth P, Datta-Roy A, Giri VB, Wilkinson M, San Mauro D.  2016.  The role of wet-zone fragmentation in shaping biodiversity patterns in peninsular India: insights from the caecilian amphibian Gegeneophis . JOURNAL OF BIOGEOGRAPHY . 43(6):1091-1102.
Nandy P.  2022.  The role of sigma factor competition in bacterial adaptation under prolonged starvation.. Microbiology (Reading). 168(5)
Rajagopal D, Mathew MK.  2020.  Role of RAB5 GEF in maintaining potassium levels under sodium chloride stress.. Plant Direct. 4(10):e00273.
Bendtsen KMoss, Jensen MH, Krishna S, Semsey S.  2015.  The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells.. Sci Rep. 5:13910.
Dahal N, Kumar S, Noon BR, Nayak R, Lama RPhunjok, Ramakrishnan U.  2020.  The role of geography, environment, and genetic divergence on the distribution of pikas in the Himalaya. ECOLOGY AND EVOLUTION.
Nair AG, Bhalla US, Kotaleski JHellgren.  2016.  Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration.. PLoS Comput Biol. 12(9):e1005080.
Patel D, Kas MJ, Chattarji S, Buwalda B.  2019.  Rodent models of social stress and neuronal plasticity: relevance to depressive-like disorders.. Behav Brain Res.
Gaitonde N, Giri VB, Kunte K.  2016.  'On the rocks': reproductive biology of the endemic toad Xanthophryne (Anura: Bufonidae) from the Western Ghats, India . Journal of Natural History. 50(39-40):2557-2572.
Bhattacharyya U, Bhalla USingh.  2015.  Robust and Rapid Air-Borne Odor Tracking without Casting(1,2,3).. eNeuro. 2(6)
Tyagi A, Yadav N, Pandit A, Ramakrishnan U.  2024.  On the road to losing connectivity: Faecal samples provide genome-wide insights into anthropogenic impacts on two large herbivore species in central India.. Mol Ecol. :e17461.
Agashe D.  2017.  The road not taken: Could stress-specific mutations lead to different evolutionary paths? PLoS Biol. 15(6):e2002862.
Bakthavachalu B, Huelsmeier J, Sudhakaran IP, Hillebrand J, Singh A, Petrauskas A, Thiagarajan D, Sankaranarayanan M, Mizoue L, Anderson EN et al..  2018.  RNP-Granule Assembly via Ataxin-2 Disordered Domains Is Required for Long-Term Memory and Neurodegeneration.. Neuron. 98(4):754-766.e4.
Soota D, Saravanan B, Mann R, Kharbanda T, Notani D.  2024.  RNA fine-tunes estrogen receptor-alpha binding on low-affinity DNA motifs for transcriptional regulation.. EMBO J.
Jeancolas C, Matsubara YJ, Vybornyi M, Lambert CN, Blokhuis A, Alline T, Griffiths AD, Ameta S, Krishna S, Nghe P.  2021.  RNA diversification by a self-reproducing ribozyme revealed by deep sequencing and kinetic modelling.. Chem Commun (Camb).
Tirumalai V, Prasad M, Shivaprasad PV.  2020.  RNA Blot Analysis for the Detection and Quantification of Plant MicroRNAs.. J Vis Exp. (161)
Goluguri RReddy, Udgaonkar JB.  2015.  Rise of the Helix from a Collapsed Globule during the Folding of Monellin.. Biochemistry. 54(34):5356-65.
Naskar S, Datta S, Chattarji S.  2022.  Riluzole prevents stress-induced spine plasticity in the hippocampus but mimics it in the amygdala.. Neurobiol Stress. 18:100442.
Subramaniam AGopal, Kumar M, Thutupalli S, Singh R.  2024.  Rigid flocks, undulatory gaits, and chiral foldamers in a chemically active polymer. NEW JOURNAL OF PHYSICS. 26(8)
Smith MD, Koerner SE, Avolio ML, Komatsu KJ, Eby S, Forrestel EJ, Collins SL, Wilcox KR, Ahumada R, Morgan JW et al..  2022.  Richness, not evenness, varies across water availability gradients in grassy biomes on five continents.. Oecologia. 199(3):649-659.
Pachamuthu K, Swetha C, Basu D, Das S, Singh I, Sundar VHari, Sujith TN, Shivaprasad PV.  2021.  Rice-specific Argonaute 17 controls reproductive growth and yield-associated phenotypes.. Plant Mol Biol. 105(1-2):99-114.
Jain PKumar, Jayappa S, Sairam T, Mittal A, Paul S, Rao VJ, Chittora H, Kashyap DK, Palakodeti D, Thangaraj K et al..  2022.  Ribosomal protein S6 kinase beta-1 gene variants cause hypertrophic cardiomyopathy.. J Med Genet. 59(10):984-992.
Pranatharthi A, Thomas P, Udayashankar AH, Bhavani C, Suresh SBangalore, Krishna S, Thatte J, Srikantia N, Ross CR, Srivastava S.  2019.  RhoC regulates radioresistance via crosstalk of ROCK2 with the DNA repair machinery in cervical cancer.. J Exp Clin Cancer Res. 38(1):392.
Thomas P, Pranatharthi A, Ross C, Srivastava S.  2019.  RhoC: a fascinating journey from a cytoskeletal organizer to a Cancer stem cell therapeutic target.. J Exp Clin Cancer Res. 38(1):328.
Agashe D, Sane M, Singhal S.  2023.  Revisiting the Role of Genetic Variation in Adaptation. AMERICAN NATURALIST .
Bellur A, Das S, Jayaraman V, Behera S, Suryavanshi A, Balasubramanian S, Balaram P, Jindal G, Balaram H.  2023.  Revisiting the Burden Borne by Fumarase: Enzymatic Hydration of an Olefin.. Biochemistry.
Pasha SNaseer, Meenakshi I, Sowdhamini R.  2016.  Revisiting Myosin Families Through Large-scale Sequence Searches Leads to the Discovery of New Myosins.. Evol Bioinform Online. 12:201-11.
Marathe K, Sanborn AF, Kunte K.  2018.  Revision of the genus Rustia Stål, 1866 (Hemiptera: Cicadidae: Cicadinae) including a generic synonymy, four new combinations, and two new species from the Western Ghats, India.. Zootaxa. 4457(3):431-443.
Phan QToan, Yokoi N, Makbun N, Joshi S, Subramanian KA, Ngo QPhu, Dow RA.  2021.  A review of the Drepanosticta carmichaeli-group, with the description of D. wildermuthi sp. nov. from the Central Highlands of Vietnam (Odonata: Zygoptera: Platystictidae).. Zootaxa. 5067(2):187-210.
Tait C, Kharva H, Schubert M, Kritsch D, Sombke A, Rybak J, Feder JL, Olsson SB.  2021.  A reversal in sensory processing accompanies ongoing ecological divergence and speciation in .. Proc Biol Sci. 288(1947):20210192.
Sneppen K, Semsey S, Seshasayee ASN, Krishna S.  2015.  Restriction modification systems as engines of diversity.. Front Microbiol. 6:528.
Raghurama M, Sankaran M.  2021.  Restoring tropical forest–grassland mosaics invaded by woody exotics. Restor Ecol .
Tolgyesi C, Helm A, Ratnam J, Silveira FAO, Torok P.  2024.  Restoration of open ecosystems in the face of climate change. GLOBAL ECOLOGY AND CONSERVATION. 53(e02989)
Borah B, Quader S, Srinivasan U.  2018.  Responses of interspecific associations in mixed-species bird flocks to selective logging. Journal of Applied Ecology. 55(4):1637-1646.
Ongole S, Sankaran M, Karanth KK.  2018.  Responses of aerial insectivorous bats to local and landscape-level features of coffee agroforestry systems in Western Ghats, India.. PLoS One. 13(8):e0201648.
Basu S, Sanyal P, Pillai AAS, Ambili A.  2019.  Response of grassland ecosystem to monsoonal precipitation variability during the Mid-Late Holocene: Inferences based on molecular isotopic records from Banni grassland, western India.. PLoS One. 14(4):e0212743.
Varahan S, Sinha V, Walvekar A, Krishna S, Laxman S.  2020.  Resource plasticity-driven carbon-nitrogen budgeting enables specialization and division of labor in a clonal community . Elife. 9
Bhatia S, Krishnamoorthy G, Udgaonkar JB.  2021.  Resolving Site-Specific Heterogeneity of the Unfolded State under Folding Conditions.. J Phys Chem Lett. :3295-3302.
Krishnamurthi R, Ghosh S, Khedkar S, Seshasayee ASai Narain.  2017.  Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12.. mSphere. 2(6)
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Malhotra N, Seshasayee ASai Narain.  2022.  Replication-dependent organisation constrains positioning of long DNA repeats in bacterial genomes.. Genome Biol Evol.
Kaushik A, Udgaonkar JB.  2023.  Replacement of the native cis prolines by alanine leads to simplification of the complex folding mechanism of a small globular protein.. Biophys J.
Alexandrov LB, Kim J, Haradhvala NJ, Huang MNi, Ng AWei Tian, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN et al..  2020.  The repertoire of mutational signatures in human cancer. Nature. 578(7793):94-101.
Patel D, Anilkumar S, Chattarji S, de Boer SF, Buwalda B.  2021.  Repeated victorious and defeat experiences induce similar apical dendritic spine remodeling in CA1 hippocampus of rats.. Behav Brain Res. 406:113243.
Patel D, Anilkumar S, Chattarji S, Buwalda B.  2018.  Repeated social stress leads to contrasting patterns of structural plasticity in the amygdala and hippocampus.. Behav Brain Res. 347:314-324.
Jain I, Rao M, Tran PT.  2023.  Reliable and robust control of nucleus centering is contingent on nonequilibrium force patterns.. iScience. 26(5):106665.
Khanal G, Mishra C, Suryawanshi KR.  2020.  Relative influence of wild prey and livestock abundance on carnivore-caused livestock predation. ECOLOGY AND EVOLUTION.
Gautam S, Mahapa A, Yeramala L, Gandhi A, Krishnan S, Vinothkumar KR, Chatterji D.  2023.  Regulatory mechanisms of c-di-AMP synthase (MsDisA) protein from Mycobacterium smegmatis revealed by a structure - function analysis.. Protein Sci. :e4568.
Dubey AK, Godbole A, Mathew MK.  2016.  Regulation of VDAC trafficking modulates cell death.. Cell Death Discov. 2:16085.
Deb BK, Hasan G.  2016.  Regulation of Store-Operated Ca(2+) Entry by Septins.. Front Cell Dev Biol. 4:142.
Chakraborty P., Deb B.K, Arige V., Musthafa T., Malik S., Yule D.I, Taylor C.W., Hasan G.  2023.  Regulation of store-operated Ca2+ entry by IP3 receptors independent of their ability to release Ca2.. Elife. 12(e80447)
Balakrishnan SS, Basu U, Shinde D, Thakur R, Jaiswal M, Raghu P.  2018.  Regulation of PI4P levels by PI4KIIIα during G-protein coupled PLC signaling in photoreceptors.. J Cell Sci.
Hasan G, Sharma A.  2020.  Regulation of neuronal physiology by Ca2+ release through the IP3R. Current Opinion in Physiology. 17:1-8.
Thakur R, Naik A, Panda A, Raghu P.  2019.  Regulation of Membrane Turnover by Phosphatidic Acid: Cellular Functions and Disease Implications.. Front Cell Dev Biol. 7:83.
Lal A, Krishna S, Seshasayee ASai Narain.  2018.  Regulation of Global Transcription in by Rsd and 6S RNA.. G3 (Bethesda).
Chawla S, Oster H, Duffield GE, Maronde E, Guido ME, Chabot C, Dkhissi-Benyahya O, Provencio I, Goel N, Youngstedt SD et al..  2024.  Reflections on Several Landmark Advances in Circadian Biology.. J Circadian Rhythms. 22:1.
Cyriac VP, Johny A, Umesh P, Palot M, Campbell PD.  2019.  Rediscovery of Cnemaspis nilagirica Manamendra-Arachchi, Batuwita and Pethiyagoda, 2007 (Squamata: Gekkonidae) from Kerala, India with notes on morphology and distribution. ZOOTAXA. 4586(1):98-108.
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.  2016.  Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Patil S, Palande A, Lodhiya T, Pandit A, Mukherjee R.  2021.  Redefining genetic essentiality in Mycobacterium tuberculosis.. Gene. 765:145091.
Agarwal A, Agashe D.  2020.  The red flour beetle Tribolium castaneum: A model for host-microbiome interactions.. PLoS One. 15(10):e0239051.
Dash PKumar, Pattabiraman C, Tandel K, Sharma S, Kumar JS, Siddappa S, Gowda M, Krishna S, Parida M.  2018.  Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing.. Genome Announc. 6(26)
Köster DVasco, Bhat A, Talluri S, Mayor S.  2022.  Reconstitution of Membrane-tethered Minimal Actin Cortices on Supported Lipid Bilayers.. J Vis Exp. (185)
Kent BA, Holman C, Amoako E, Antonietti A, Azam JM, Ballhausen H, Bediako Y, Belasen AM, Carneiro CFD, Chen Y-C et al..  2022.  Recommendations for empowering early career researchers to improve research culture and practice.. PLoS Biol. 20(7):e3001680.
Subrahmanyam R, Dwivedi D, Rashid Z, Bonnycastle K, Cousin MA, Chattarji S.  2021.  Reciprocal regulation of spontaneous synaptic vesicle fusion by Fragile X mental retardation protein and group I metabotropic glutamate receptors.. J Neurochem.
Gerkin RC, Ohla K, Veldhuizen MG, Joseph PV, Kelly CE, Bakke AJ, Steele KE, Farruggia MC, Pellegrino R, Pepino MY et al..  2021.  Recent smell loss is the best predictor of COVID-19 among individuals with recent respiratory symptoms. Chem Senses. 46
Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JTL, Redondo SA, Prost S, Barsh G et al..  2021.  Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection.. Mol Biol Evol.
Chaitanya R, Giri VB, Deepak V..  2017.  On the recent designation of a neotype for the taxon Calotes versicolor (Daudin, 1802) (Reptilia: Agamidae). Zootaxa. 4317(3):585-587.
Hemalatha A, Mayor S.  2019.  Recent advances in clathrin-independent endocytosis.. F1000Res. 8
Khan A, Krishna S.M., Ramakrishnan U, Das R.  2021.  Recapitulating whole genome based population genetic structure for Indian wild tigers through an ancestry informative marker panel. Heredity (Edinb).
Gower DJ, Giri V, Captain A, Wilkinson M.  2016.  A reassessment of Melanophidium Günther, 1864 (Squamata: Serpentes: Uropeltidae) from the Western Ghats of peninsular India, with the description of a new species.. Zootaxa. 4085(4):481-503.
Kottur J, Nair DT.  2016.  Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics.. Angew Chem Int Ed Engl. 55(7):2397-400.
Yadav S, Thakur R, Georgiev P, Deivasigamani S, Krishnan H, Ratnaparkhi G, Raghu P.  2018.  RDGBα localization and function at membrane contact sites is regulated by FFAT-VAP interactions.. J Cell Sci. 131(1)
Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P.  2015.  RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.. J Cell Sci. 128(17):3330-44.
Baliga C, Majhi S, Mondal K, Bhattacharjee A, VijayRaghavan K, Varadarajan R.  2016.  Rational elicitation of cold-sensitive phenotypes.. Proc Natl Acad Sci U S A. 113(18):E2506-15.
Das A, Yadav A, Gupta M, R P, Terse VL, Vishvakarma V, Singh S, Nandi T, Banerjee A, Mandal K et al..  2021.  Rational Design of Protein-Specific Folding Modifiers.. J Am Chem Soc.
Prakash V, Saha S, Chakraborty K, Krishnan Y.  2016.  Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter. Chemical Science . 7:1946-1953.
Ganguly D, Srivathsa A.  2024.  Ratel Mellivora capensis in a human-dominated savanna landscape in Kachchh, Gujarat, India. Small Carnivore Conservation. 62
Walavalkar K, Saravanan B, Singh AKumar, Jayani RSingh, Nair A, Farooq U, Islam Z, Soota D, Mann R, Shivaprasad PV et al..  2020.  A rare variant of African ancestry activates 8q24 lncRNA hub by modulating cancer associated enhancer.. Nat Commun. 11(1):3598.
Kharva H, Feder JL, Hahn DA, Olsson SB.  2022.  Rapid brain development and reduced neuromodulator titres correlate with host shifts in .. R Soc Open Sci. 9(9):220962.
Kaushik S, Nair AG, Mutt E, Subramanian HPrasanna, Sowdhamini R.  2016.  Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.. Bioinformatics. 32(3):338-44.
Nandi SKumar, Mandal R, Bhuyan PJyoti, Dasgupta C, Rao M, Gov NS.  2018.  A random first-order transition theory for an active glass.. Proc Natl Acad Sci U S A. 115(30):7688-7693.
Richhariya S, Hasan G.  2017.  Ral function in muscle is required for flight maintenance in Drosophila.. Small GTPases. :1-6.
Manjunath L, Coombes D, Davies J, Dhurandhar M, Tiwari VR, Dobson RCJ, Sowdhamini R, Ramaswamy S, Bose S.  2020.  Quaternary variations in the structural assembly of N-acetylglucosamine-6-phosphate deacetylase from Pasteurella multocida.. Proteins.
Chakraborty D, Ramakrishnan U, Sinha A.  2015.  Quaternary climate change and social behavior shaped the genetic differentiation of an endangered montane primate from the southern edge of the Tibetan Plateau.. Am J Primatol. 77(3):271-84.
Bhatia D, Arumugam S, Nasilowski M, Joshi H, Wunder C, Chambon V, Prakash V, Grazon C, Nadal B, Maiti PK et al..  2016.  Quantum dot-loaded monofunctionalized DNA icosahedra for single-particle tracking of endocytic pathways.. Nat Nanotechnol.
van Zanten T, Greeshma PS, Mayor S.  2023.  Quantitative fluorescence emission anisotropy microscopy for implementing homo-fluorescence resonance energy transfer measurements in living cells. Mol Biol Cell.. 34(6)
Jha A, van Zanten TS, Philippe J-M, Mayor S, Lecuit T.  2018.  Quantitative Control of GPCR Organization and Signaling by Endocytosis in Epithelial Morphogenesis.. Curr Biol.
Dhanya SK, Hasan G.  2021.  Purkinje neurons with loss of STIM1 exhibit age-dependent changes in gene expression and synaptic components. J Neurosci..

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