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Author Title [ Type(Asc)] Year
Journal Article
Sengupta I, Udgaonkar J.  2019.  Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Marshall DC, Moulds M, Hill KBR, Price BW, Wade EJ, Owen CL, Goemans G, Marathe K, Sarkar V, et al..  2018.  A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification. ZOOTAXA. 4424(1):1-64.
Gandhimathi A, Sowdhamini R.  2016.  Molecular modelling of human 5-hydroxytryptamine receptor (5-HT2A) and virtual screening studies towards the identification of agonist and antagonist molecules.. J Biomol Struct Dyn. 34(5):952-70.
Gangadharan B, Sunitha MS, Mukherjee S, Chowdhury RRoy, Haque F, Sekar N, Sowdhamini R, Spudich JA, Mercer JA.  2017.  Molecular mechanisms and structural features of cardiomyopathy-causing troponin T mutants in the tropomyosin overlap region.. Proc Natl Acad Sci U S A.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Mutt E, Sowdhamini R.  2016.  Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Lajmi A, Giri VB, K. Karanth P.  2016.  Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). ORGANISMS DIVERSITY & EVOLUTION. 16(3):659-677.
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G.  2016.  Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. METHODS AND APPLICATIONS IN FLUORESCENCE. 4(1)
Das S, Hegde A, Shivaprasad PV.  2018.  Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India.. Arch Virol.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.  2019.  Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Kumar H, Singh J, Kumari P, Udgaonkar JB.  2017.  Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
Jethva PN, Udgaonkar JB.  2017.  Modulation of the Extent of Cooperative Structural Change During Protein Folding by Chemical Denaturant.. J Phys Chem B. 121(35):8263-8275.
Mogre A, Veetil RT, Seshasayee ASai Narain.  2017.  Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli.. G3 (Bethesda). 7(12):3955-3966.
Rasquinha DN, Sankaran M.  2016.  Modelling biome shifts in the Indian subcontinent under scenarios of future climate change . Current Science. 111(1):147-156.
Gupte TM.  2015.  Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals.. PLoS One. 10(5):e0126829.
Kabir S, Venkatesan R, Thaker M.  2019.  Mismatch in receiver responses to multimodal signals in a diurnal gecko. Animal Behaviour. 147:115-123.
Arya D, Sachithanandan SP, Ross C, Palakodeti D, Li S, Krishna S.  2017.  MiRNA182 regulates percentage of myeloid and erythroid cells in chronic myeloid leukemia.. Cell Death Dis. 8(1):e2547.
Tirumalai V, Swetha C, Nair A, Pandit A, Shivaprasad PV.  2019.  miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.. J Exp Bot.
Krishna S, Laxman S.  2018.  A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.. Mol Biol Cell. :mbcE18010017.
Deshmukh R, Baral S, Gandhimathi A, Kuwalekar M, Kunte K.  2018.  Mimicry in butterflies: co-option and a bag of magnificent developmental genetic tricks.. Wiley Interdiscip Rev Dev Biol. 7(1)
Goluguri RReddy, Sen S, Udgaonkar J.  2019.  Microsecond sub-domain motions and the folding and misfolding of the mouse prion protein.. Elife. 8
Goluguri RReddy, Udgaonkar JB.  2016.  Microsecond rearrangements of hydrophobic clusters in an initially collapsed globule prime structure formation during the folding of a small protein.. J Mol Biol.
Thorpe CJ, Lewis TR, Kulkarni S, Watve A, Gaitonde N, Pryce D, Davies L, Bilton DT, Knight ME.  2018.  Micro-habitat distribution drives patch quality for sub-tropical rocky plateau amphibians in the northern Western Ghats, India.. PLoS One. 13(3):e0194810.
Melvin P, Bankapalli K, D'Silva P, Shivaprasad PV.  2017.  Methylglyoxal detoxification by a DJ-1 family protein provides dual abiotic and biotic stress tolerance in transgenic plants.. Plant Mol Biol.
Varahan S, Walvekar A, Sinha V, Krishna S, Laxman S.  2019.  Metabolic constraints drive self-organization of specialized cell groups.. Elife. 8
Goyal A.  2018.  Metabolic adaptations underlying genome flexibility in prokaryotes.. PLoS Genet. 14(10):e1007763.
Arora R, Rekhi B, Chandrani P, Krishna S, Dutt A.  2019.  Merkel cell polyomavirus is implicated in a subset of Merkel cell carcinomas, in the Indian subcontinent.. Microb Pathog. :103778.
Barnosky AD, Hadly EA, Gonzalez P, Head J, P Polly D, A Lawing M, Eronen JT, Ackerly DD, Alex K, Biber E et al..  2017.  Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems.. Science. 355(6325)
Sant HH, Sane SP.  2018.  The Mechanosensory-Motor Apparatus of Antennae in the Oleander hawk moth (Daphnis nerii, Lepidoptera).. J Comp Neurol.
Thottacherry JJose, Kosmalska AJoanna, Kumar A, Vishen ASingh, Elosegui-Artola A, Pradhan S, Sharma S, Singh PP, Guadamillas MC, Chaudhary N et al..  2018.  Mechanochemical feedback control of dynamin independent endocytosis modulates membrane tension in adherent cells.. Nat Commun. 9(1):4217.
Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DSelvi, Mukundan N, Jambekar A, Thangaraj K et al..  2015.  Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies.. J Biol Chem. 290(11):7003-15.
Raghavender US, Sowdhamini R.  2015.  Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
Kumar H, Udgaonkar JB.  2019.  Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Kumar H, Udgaonkar JB.  2018.  Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Jayanth N, Puranik M.  2017.  Mechanism of Discrimination of 8-Oxoguanosine versus Guanosine by Escherichia coli Fpg.. J Phys Chem B.
Sabareesan AThody, Mathew MK, Udgaonkar JB.  2018.  Mechanism of aggregation and membrane interactions of mammalian prion protein.. Biochim Biophys Acta.
Deora T, Gundiah N, Sane SP.  2017.  Mechanics of the thorax in flies.. J Exp Biol. 220(Pt 8):1382-1395.
Gopurappilly R, Deb BKumar, Chakraborty P, Hasan G.  2019.  Measurement of Store-Operated Calcium Entry in Human Neural Cells: From Precursors to Differentiated Neurons.. Methods Mol Biol. 2029:257-271.
Rupprecht J-F, A Vishen S, Shivashankar GV, Rao M, Prost J.  2018.  Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus.. Phys Rev Lett. 120(9):098001.
Agrawal T, Hasan G.  2015.  Maturation of a central brain flight circuit in Drosophila requires Fz2/Ca²⁺ signaling.. Elife. 4
Ramesh D, Brockmann A.  2019.  Mass Spectrometric Quantification of Arousal Associated Neurochemical Changes in Single Honey Bee Brains and Brain Regions.. ACS Chem Neurosci. 10(4):950-1959.
Vijayasarathy M, Balaram P.  2018.  Mass spectrometric identification of bromotryptophan containing conotoxin sequences from the venom of C. amadis.. Toxicon. 144:68-74.
Garg KM, Chattopadhyay B, Doss DPSwami, Kumar AKVinoth, Kandula S, Ramakrishnan U.  2015.  Males and females gain differentially from sociality in a promiscuous fruit bat Cynopterus sphinx.. PLoS One. 10(3):e0122180.
Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV.  2018.  Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.. Plant Cell.
Ashe S, Yadav S.  2019.  Maintenance of Rhodopsin levels in Drosophila photoreceptor and phototransduction requires Protein Kinase D.. Fly (Austin).
Thatte P, Joshi A, Vaidyanathan S, Landguth E, Ramakrishnan U.  2018.  Maintaining tiger connectivity and minimizing extinction into the next century: Insights from landscape genetics and spatially-explicit simulations . BIOLOGICAL CONSERVATION . 218:181-191.
Marcel N, Perumalsamy LR, Shukla SK, Sarin A.  2017.  The lysine deacetylase Sirtuin 1 modulates the localization and function of the Notch1 receptor in regulatory T cells.. Sci Signal. 10(473)
Lupton C, Sengupta M, Cheng R-K, Chia J, Thirumalai V, Jesuthasan S.  2017.  Loss of the Habenula Intrinsic Neuromodulator Kisspeptin1 Affects Learning in Larval Zebrafish.. eNeuro. 4(3)
Sudhakaran IP, Ramaswami M.  2017.  Long-term memory consolidation: The role of RNA-binding proteins with prion-like domains.. RNA Biol. 14(5):568-586.
Kuklin EA, Alkins S, Bakthavachalu B, Genco MC, Sudhakaran I, K Raghavan V, Ramaswami M, Griffith LC.  2017.  The long 3'UTR mRNA of CaMKII is essential for translation-dependent plasticity of spontaneous release in Drosophila melanogaster.. J Neurosci.
Hautier Y, Isbell F, Borer ET, Seabloom EW, W Harpole S, Lind EM, MacDougall AS, Stevens CJ, Adler PB, Alberti J et al..  2018.  Local loss and spatial homogenization of plant diversity reduce ecosystem multifunctionality.. Nat Ecol Evol. 2(1):50-56.
Gonzalez-Perez A, Sabarinathan R, Lopez-Bigas N.  2019.  Local Determinants of the Mutational Landscape of the Human Genome.. Cell. 177(1):101-114.
Jog K, Sule M, Bopardikar I, Patankar V, Sutaria D.  2018.  Living with dolphins: Local ecological knowledge and perceptions of small cetaceans along the Sindhudurg coastline of Maharashtra, India. MARINE MAMMAL SCIENCE . 34 (2):488-498.
Chimthanawala A, Badrinarayanan A.  2019.  Live-Cell Fluorescence Imaging of RecN in Caulobacter crescentus Under DNA Damage.. Methods Mol Biol. 2004:239-250.
Lee I-H, Saha S, Polley A, Huang H, Mayor S, Rao M, Groves JT.  2015.  Live cell plasma membranes do not exhibit a miscibility phase transition over a wide range of temperatures.. J Phys Chem B. 119(12):4450-9.
Hebbar S, Khandelwal A, Jayashree R, Hindle SJ, Chiang YNing, Yew JY, Sweeney ST, Schwudke D.  2017.  Lipid metabolic perturbation is an early-onset phenotype in adult spinster mutants: a Drosophila model for lysosomal storage disorders.. Mol Biol Cell. 28(26):3728-3740.
Janakiraman D.  2017.  Lévy flights in the presence of a point sink of finite strength.. Phys Rev E. 95(1-1):012154.
Kshettry A, Vaidyanathan S, Athreya V.  2017.  Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India.. PLoS One. 12(5):e0177013.
Lichtenstein L, Brockmann A, Spaethe J.  2019.  Learning of monochromatic stimuli in Apis cerana and Apis mellifera by means of PER conditioning.. J Insect Physiol. 114:30-34.
Wigley BJ, Slingsby JA, Diaz S, Bond WJ, Fritz H, Coetsee C.  2016.  Leaf traits of African woody savanna species across climate and soil fertility gradients: evidence for conservative versus acquisitive resource-use strategies. Journal of Ecology.
Patankar V, D'Souza E, Marathe A.  2019.  Latitude and live coral cover independently affect Chaetodontid and Pomacanthid fish community distribution in the Andaman and Nicobar archipelago, India. MARINE BIODIVERSITY. 49(1):235-245.
Agashe D, Sane M, Phalnikar K, Diwan GD, Habibullah A, Martinez-Gomez NCecilia, Sahasrabuddhe V, Polachek W, Wang J, Chubiz LM et al..  2016.  Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.. Mol Biol Evol.
Velho N, Srinivasan U, Singh P, Laurance WF.  2016.  Large mammal use of protected and community-managed lands in a biodiversity hotspot. ANIMAL CONSERVATION. 19(2):199-208.
Panthi S, Khanal G, Acharya KPrasad, Aryal A, Srivathsa A.  2017.  Large anthropogenic impacts on a charismatic small carnivore: Insights from distribution surveys of red panda Ailurus fulgens in Nepal.. PLoS One. 12(7):e0180978.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2015.  Landscape scale habitat suitability modelling of bats in the Western Ghats of India: Bats like something in their tea. Biological Conservation. 191:529–536.
Balebail S, Raja SK, Sane SP.  2019.  Landing maneuvers of houseflies on vertical and inverted surfaces.. PLoS One. 14(8):e0219861.
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N et al..  2015.  Key challenges for the creation and maintenance of specialist protein resources.. Proteins. 83(6):1005-13.
Kar M, Nisheetha A, Kumar A, Jagtap S, Shinde J, Singla M, M S, Pandit A, Chandele A, Kabra SK et al..  2019.  Isolation and molecular characterization of Dengue virus clinical isolates from pediatric patients in New Delhi.. Int J Infect Dis. 84:S25-S33.
Robin VV, Gupta P, Thatte P, Ramakrishnan U.  2015.  Islands within islands: two montane palaeo-endemic birds impacted by recent anthropogenic fragmentation.. Mol Ecol. 24(14):3572-84.
Megha M, Hasan G.  2017.  IP3R mediated Ca(2+) release regulates protein metabolism in Drosophila neuroendocrine cells: implications for development under nutrient stress.. Development.
Thillaiappan NBabu, Chakraborty P, Hasan G, Taylor CW.  2019.  IP3 receptors and Ca2+ entry. Biochim Biophys Acta Mol Cell Res. 1866(7):1092-1100.
Galbraith DA, Fuller ZL, Ray AM, Brockmann A, Frazier M, Gikungu MW, J Martinez FIturralde, Kapheim KM, Kerby JT, Kocher SD et al..  2018.  Investigating the viral ecology of global bee communities with high-throughput metagenomics.. Sci Rep. 8(1):8879.
Mahita J, Sowdhamini R.  2018.  Investigating the effect of key mutations on the conformational dynamics of Toll-like receptor dimers through molecular dynamics simulations and protein structure networks.. Proteins.
Mascarenhas NManuel, Terse VL, Gosavi S.  2018.  Intrinsic Disorder in a Well-Folded Globular Protein.. J Phys Chem B.
Toniolo C, Crisma M, Formaggio F, Alemán C, Ramakrishnan C, Kalmankar N, Balaram P.  2017.  Intramolecular Backbone···Backbone Hydrogen Bonds in Polypeptide Conformations. The Other Way Around: ε-Turn.. Biopolymers. 108(1)
Robra L, Thirumalai V.  2016.  The Intracellular Signaling Molecule Darpp-32 Is a Marker for Principal Neurons in the Cerebellum and Cerebellum-Like Circuits of Zebrafish.. Front Neuroanat. 10:81.
Getahun MN, Thoma M, Lavista-Llanos S, Keesey I, Fandino RA, Knaden M, Wicher D, Olsson SB, Hansson BS.  2016.  Intracellular regulation of the insect chemoreceptor complex impacts odour localization in flying insects.. J Exp Biol. 219(Pt 21):3428-3438.
Chakraborty P, Chattarji S.  2019.  Interventions after acute stress prevent its delayed effects on the amygdala.. Neurobiol Stress. 10:100168.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.  2016.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Evans RJ, Sundaramurthy V, Frickel E-M.  2018.  The Interplay of Host Autophagy and Eukaryotic Pathogens.. Front Cell Dev Biol. 6:118.
Jabeen S, Thirumalai V.  2018.  The interplay between electrical and chemical synaptogenesis.. J Neurophysiol.
George EAntony, Bröger A-K, Thamm M, Brockmann A, Scheiner R.  2019.  Inter-individual variation in honey bee dance intensity correlates with expression of the foraging gene.. Genes Brain Behav.
Banerjee A, Marbach F, Anselmi F, Koh MS, Davis MB, da Silva PGarcia, Delevich K, Oyibo HK, Gupta P, Li B et al..  2015.  An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb.. Neuron. 87(1):193-207.
Jayashree S, Murugavel P, Sowdhamini R, Srinivasan N.  2019.  Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.. Biol Direct. 14(1):1.
Badarinath K, Dutta A, Hegde A, Pincha N, Gund R, Jamora C.  2018.  Interactions Between Epidermal Keratinocytes, Dendritic Epidermal T-Cells, and Hair Follicle Stem Cells.. Methods Mol Biol.
Dey M, Krishnaswamy J, Morisaka T, Kelkar N.  2019.  Interacting effects of vessel noise and shallow river depth elevate metabolic stress in Ganges river dolphins.. Sci Rep. 9(1):15426.
Kalappurakkal JMathew, Anilkumar AAmbika, Patra C, van Zanten TS, Sheetz MP, Mayor S.  2019.  Integrin Mechano-chemical Signaling Generates Plasma Membrane Nanodomains that Promote Cell Spreading.. Cell. 177(7):1738-1756.e23.
Mahita J, Sowdhamini R.  2017.  Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state.. Biol Direct. 12(1):9.
Srivathsa A, K Karanth U, N Kumar S, Oli MK.  2019.  Insights from distribution dynamics inform strategies to conserve a dhole Cuon alpinus metapopulation in India.. Sci Rep. 9(1):3081.
Barron HC, Vogels TP, Behrens TE, Ramaswami M.  2017.  Inhibitory engrams in perception and memory.. Proc Natl Acad Sci U S A.
Kalappa DMonnanda, Subramani PAnnamalai, Basavanna SKanchanaha, Ghosh SKumar, Sundaramurthy V, Uragayala S, Tiwari S, Anvikar AR, Valecha N.  2018.  Influence of midgut microbiota in Anopheles stephensi on Plasmodium berghei infections.. Malar J. 17(1):385.
Rajasekaran S, Thatte J, Periasamy J, Javali A, Jayaram M, Sen D, Krishnagopal A, Jayandharan GR, Sambasivan R.  2018.  Infectivity of adeno-associated virus serotypes in mouse testis.. BMC Biotechnol. 18(1):70.
Amanullah A, Mishra R, Upadhyay A, Reddy PP, Das R, Mishra A.  2018.  Indomethacin elicits proteasomal dysfunctions develops apoptosis through mitochondrial abnormalities.. J Cell Physiol. 233(2):1685-1699.
Panicker D, Haris A, Sutaria D.  2018.  Indian Ocean humpback dolphin (Sousa plumbea) estuary-use patterns in Kochi harbor, India. MARINE MAMMAL SCIENCE. 34(1):208-219.
P HAhmed, V V, More RPrabhakar, Viswanath B, Jain S, Rao MS, Mukherjee O.  2019.  INDEX-db: The Indian Exome Reference Database (Phase I).. J Comput Biol.
Nordström K, Dahlbom J, Pragadheesh VS, Ghosh S, Olsson A, Dyakova O, Suresh SKrishna, Olsson SB.  2017.  In situ modeling of multimodal floral cues attracting wild pollinators across environments.. Proc Natl Acad Sci U S A.
Sinha V, Goyal A, Svenningsen SL, Semsey S, Krishna S.  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages.. Front Microbiol. 8:1386.
Mahita J, Harini K, Pichika MRao, Sowdhamini R.  2016.  An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.. J Biomol Struct Dyn. 34(6):1345-62.
Syiem BLa Nam, Goswami VR, Vasudev D.  2018.  "In a tree by the brook, there's a songbird who sings": Woodlands in an agricultural matrix maintain functionality of a wintering bird community.. PLoS One. 13(8):e0201657.
Blanco-Redondo B, Nuwal N, Kneitz S, Nuwal T, Halder P, Liu Y, Ehmann N, Scholz N, Mayer A, Kleber J et al..  2019.  Implications of the null mutation for synapsin phosphorylation, longevity, climbing, and behavioural plasticity in adult .. J Exp Biol.

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