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Iyer MS, Bhargava K, Pavalam M, Sowdhamini R.  2019.  GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.. Database (Oxford). 2019
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..  2015.  Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Upadhyay AKumar, Sowdhamini R.  2019.  Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: .. Bioinform Biol Insights. 13:1177932218821362.
Upadhyay AKumar, Sowdhamini R.  2016.  Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Bhattacharyya T, Sowdhamini R.  2019.  Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.. Evol Bioinform Online. 15:1176934319840289.
Rao RM, Pasha SNaseer, Sowdhamini R.  2016.  Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Iyer MS, Joshi AG, Sowdhamini R.  2018.  Genome-wide survey of remote homologues for protein domain superfamilies of known structure reveals unequal distribution across structural classes.. Mol Omics.
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Karpe SD, Jain R, Brockmann A, Sowdhamini R.  2016.  Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera.. Genome Biol Evol. 8(9):2879-2895.
Mahita J, Harini K, Pichika MRao, Sowdhamini R.  2016.  An in silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway.. J Biomol Struct Dyn. 34(6):1345-62.
Mahita J, Sowdhamini R.  2017.  Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state.. Biol Direct. 12(1):9.
Jayashree S, Murugavel P, Sowdhamini R, Srinivasan N.  2019.  Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.. Biol Direct. 14(1):1.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.  2016.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Mahita J, Sowdhamini R.  2018.  Investigating the effect of key mutations on the conformational dynamics of Toll-like receptor dimers through molecular dynamics simulations and protein structure networks.. Proteins.