Joseph AP, Swapna LS, Rakesh R, Srinivasan N. 2016. Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting.. J Struct Biol.
Naveenkumar N, Prabantu VManjveekar, Vishwanath S, Sowdhamini R, Srinivasan N. 2022. Structures of distantly-related interacting protein homologues are less divergent than non-interacting homologues.. FEBS Open Bio.
Rakesh R, Joseph APraveen, Bhaskara RM, Srinivasan N. 2016. Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.. RNA Biol. 13(10):1025-1040.
Vishwanath S, Sukhwal A, Sowdhamini R, Srinivasan N. 2017. Specificity and stability of transient protein-protein interactions.. Curr Opin Struct Biol. 44:77-86.
Naveenkumar N, Sowdhamini R, Srinivasan N. 2019. Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family.. FEBS Open Bio.
Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-Montaño B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL et al.. 2015. SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.. Database (Oxford). 2015:bav060.
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N. 2016. Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Mudgal R, Sandhya S, Kumar G, Sowdhamini R, Chandra NR, Srinivasan N. 2015. NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.. Nucleic Acids Res. 43(Database issue):D300-5.
Aghera NK, Prabha J, Tandon H, Chattopadhyay G, Vishwanath S, Srinivasan N, Varadarajan R. 2020. Mechanism of CcdA-Mediated Rejuvenation of DNA Gyrase.. Structure. 28(5):562-572.e4.
Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N et al.. 2015. Key challenges for the creation and maintenance of specialist protein resources.. Proteins. 83(6):1005-13.
Parvathy J, Yazhini A, Srinivasan N, Sowdhamini R. 2023. Interfacial residues in protein-protein complexes are in the eyes of the beholder.. Proteins.
Jayashree S, Murugavel P, Sowdhamini R, Srinivasan N. 2019. Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.. Biol Direct. 14(1):1.
Prabantu VManjveekar, Naveenkumar N, Srinivasan N. 2021. Influence of Disease-Causing Mutations on Protein Structural Networks.. Front Mol Biosci. 7:620554.
Naveenkumar N, Kumar G, Sowdhamini R, Srinivasan N, Vishwanath S. 2019. Fold combinations in multi-domain proteins.. Bioinformation. 15(5):342-350.
Sudha G, Naveenkumar N, Srinivasan N. 2015. Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Ramakrishnan G, Ochoa-Montaño B, Raghavender US, Mudgal R, Joshi AG, Chandra NR, Sowdhamini R, Blundell TL, Srinivasan N. 2015. Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: insights into structure and function.. Tuberculosis (Edinb). 95(1):14-25.
Kalmankar NV, Pavalam M, Indrakumar S, Srinivasan N, Sowdhamini R. 2022. DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.. Database (Oxford). 2022
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJinan, Craik DJ, Finn RD, Gloriam D, Haft DH et al.. 2015. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.. Database (Oxford). 2015:bav063.
Bheemireddy S, Sandhya S, Srinivasan N, Sowdhamini R. 2022. Computational tools to study RNA-protein complexes.. Front Mol Biosci. 9:954926.