Author Title [ Type(Asc)] Year
Journal Article
Seshadri A, Badrinarayanan A.  2025.  Exonuclease action of replicative polymerase gamma drives damage-induced mitochondrial DNA clearance. EMBO Reports. :1-21.
Ganesh S, P HAhmed, Nadella RKumar, More RPrabhakar, Sheshadri M, Viswanath B, Rao M, Jain S, Mukherjee O.  2019.  Exome sequencing in families with severe mental illness identifies novel and rare variants in genes implicated in Mendelian neuropsychiatric syndromes.. Psychiatry Clin Neurosci. 73(1):11-19.
Bala P, Singh AK, Kavadipula P, Kotapalli V, Sabarinathan R, Bashyam MD..  2021.  Exome sequencing identifies ARID2 as a novel tumor suppressor in early-onset sporadic rectal cancer. Oncogene. 40:863-874.
Mahajan S, Agashe D.  2022.  Evolutionary jumps in bacterial GC content.. G3 (Bethesda).
Agarwal I, Bauer AM, Gamble T, Giri VB, Jablonski D, Khandekar A, Mohapatra PP, Masroor R, Mishra A, Ramakrishnan U.  2022.  The evolutionary history of an accidental model organism, the leopard gecko Eublepharis macularius (Squamata: Eublepharidae).. Mol Phylogenet Evol. :107414.
Jagtap S, Pattabiraman C, Sankaradoss A, Krishna S, Roy R.  2023.  Evolutionary dynamics of dengue virus in India.. PLoS Pathog. 19(4):e1010862.
Chatterjee P, Mohan U, Krishnan A, Sane SP.  2020.  Evolutionary constraints on flicker fusion frequency in Lepidoptera.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Kunte K, Agashe D.  2015.  Evolutionary Biology. Current Science. 108:1835-1873.
Joshi J, Prakash A, Kunte K.  2017.  Evolutionary Assembly of Communities in Butterfly Mimicry Rings.. Am Nat. 189(4):E58-E76.
Sudha G, Naveenkumar N, Srinivasan N.  2015.  Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.. Proteins. 83(10):1766-86.
Sharda M, Badrinarayanan A, Seshasayee ASai Narain.  2020.  Evolutionary and Comparative analysis of bacterial Non-Homologous End Joining Repair.. Genome Biol Evol.
Chaturvedi N, Chatterjee P.  2024.  Evolutionary Adaptation in Heterogeneous and Changing Environments.. Evolution.
Chan KMan Carmen, Arthur AL, Morstein J, Jin M, Bhat A, Schlesinger D, Son S, Stevens DA, Drubin DG, Fletcher DA.  2021.  Evolutionarily related small viral fusogens hijack distinct but modular actin nucleation pathways to drive cell-cell fusion.. Proc Natl Acad Sci U S A. 118(1)
Pal S., Udgaonkar JB.  2022.  Evolutionarily conserved proline residues impede the misfolding of the mouse prion protein by destabilizing an aggregation-competent partially unfolded form . J Mol Biol..
Dubey A, Muthu G, Seshasayee ASai Narain.  2025.  Evolution of transcription factor-containing superfamilies in Eukaryotes.. Journal of Molecular Biology. :168959.
Kikuchi DW, Allen WL, Arbuckle K, Aubier TG, Briolat ES, Burdfield-Steel ER, Cheney KL, Daňková K, Elias M, Hämäläinen L et al..  2023.  The evolution and ecology of multiple antipredator defences.. J Evol Biol.
Strauss SKaminski, Schirman D, Jona G, Brooks AN, Kunjapur AM, Ba ANNguyen, Flint A, Solt A, Mershin A, Dixit A et al..  2019.  Evolthon: A community endeavor to evolve lab evolution.. PLoS Biol. 17(3):e3000182.
Suratekar R, Panda A, Padinjat R, Krishna S.  2018.  Evidence of sinks and sources in the phospholipase C activated PIP2 cycle.. FEBS Lett.
Br A, Dovih P, Ramakrishnan U, Liang E, Mendenhall I, Hong DLWen, Smith JGD.  2019.  Evidence of filovirus and henipavirus in bats and bat harvesters, India. International Journal of Infectious Diseases. 79(Suppl.1):60.
Jyothi P, Aralimarad P, Wali V, Dave S, Bheemanna M, Ashoka J, Shivayogiyappa P, Lim KS, Chapman JW, Sane SP.  2021.  Evidence for facultative migratory flight behavior in Helicoverpa armigera (Noctuidae: Lepidoptera) in India.. PLoS One. 16(1):e0245665.
Wang T, Goyal A, Dubinkina V, Maslov S.  2019.  Evidence for a multi-level trophic organization of the human gut microbiome.. PLoS Comput Biol. 15(12):e1007524.
Srivathsa A, Sharma S, Oli MK.  2020.  Every dog has its prey: Range-wide assessment of links between diet patterns, livestock depredation and human interactions for an endangered carnivore.. Sci Total Environ. 714:136798.
Bendigiri C, Harini K, Yenkar S, Zinjarde S, Sowdhamini R, RaviKumar A.  2018.  Evaluating Ylehd, a recombinant epoxide hydrolase from Yarrowia lipolytica as a potential biocatalyst for the resolution of benzyl glycidyl ether. RSC ADVANCES. 8(23):12918-12926.
Nayak G, Honguntikar SD, Kalthur SGuruprasad, D'Souza ASylvan, Mutalik S, Setty MM, Kalyankumar R, Krishnamurthy H, Kalthur G, Adiga SKumar.  2016.  Ethanolic extract of Moringa oleifera Lam. leaves protect the pre-pubertal spermatogonial cells from cyclophosphamide-induced damage.. J Ethnopharmacol. 182:101-9.
Jha V, Narjala A, Basu D, Sujith TN, Pachamuthu K, Chenna S, Nair A, Shivaprasad PV.  2021.  Essential role of γ-clade RNA-dependent RNA polymerases in rice development and yield-related traits is linked to their atypical polymerase activities regulating specific genomic regions.. New Phytol.
Chakraborty P, Hasan G.  2023.  ER-Ca2+ stores and the regulation of Store-operated Ca2+ Entry in neurons.. J Physiol.
Wegener C, Hasan G.  2019.  ER-Ca2+ sensor STIM regulates neuropeptides required for development under nutrient restriction in Drosophila.. PLoS One. 14(7):e0219719.
Sane SP.  2017.  Eppur si vola (and yet it flies).. J Exp Biol. 220(Pt 4):514-516.
Sullivan T, Thirthagiri E, Chong C-E, Stauffer S, Reid S, Southon E, Hassan T, Ravichandran A, Wijaya E, Lim J et al..  2021.  Epidemiological and ES cell-based Functional Evaluation of BRCA2 Variants Identified in Families with Breast Cancer.. Hum Mutat. 42:200-212.
Rajagopal S, Brockmann A, George EAntony.  2022.  Environment-dependent benefits of interindividual variation in honey bee recruitment. ANIMAL BEHAVIOUR. 192:9-26.
Daleo P, Alberti J, Chaneton EJ, Iribarne O, Tognetti PM, Bakker JD, Borer ET, Bruschetti M, MacDougall AS, Pascual J et al..  2023.  Environmental heterogeneity modulates the effect of plant diversity on the spatial variability of grassland biomass.. Nat Commun. 14(1):1809.
KKrishnadas M, Kumar A, Comita LS.  2016.  Environmental gradients structure tropical tree assemblages at the regional scale . JOURNAL OF VEGETATION SCIENCE . 27(6):1117-1128.
Ramakrishnan G, Ochoa-Montaño B, Raghavender US, Mudgal R, Joshi AG, Chandra NR, Sowdhamini R, Blundell TL, Srinivasan N.  2015.  Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: insights into structure and function.. Tuberculosis (Edinb). 95(1):14-25.
Sane SP.  2020.  Enhancing insect flight research with a lab-on-cables.. Sci Robot. 5(45)
Simões deOliveira L, O'Leary HE, Nawaz S, Loureiro R, Davenport EC, Baxter P, , Dando O, Perkins E, Peltier J et al..  2024.  Enhanced hippocampal LTP but normal NMDA receptor and AMPA receptor function in a rat model of CDKL5 deficiency disorder.. Mol Autism.. 15(1):28.
Anderson DM, Jayanthi LP, Gosavi S, Meiering EM.  2023.  Engineering the kinetic stability of a β-trefoil protein by tuning its topological complexity.. Front Mol Biosci. 10:1021733.
Chakravarthy A, Nandakumar A, George G, Ranganathan S, Umashankar S, Shettigar N, Palakodeti D, Gulyani A, Ramesh A.  2021.  Engineered RNA biosensors enable ultrasensitive SARS-CoV-2 detection in a simple color and luminescence assay.. Life Sci Alliance. 4(12)
Neelamraju S, Gosavi S, Wales DJ.  2018.  Energy Landscape of the Designed Protein Top7.. J Phys Chem B.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Vaishnav A, Shukla AK, Sharma A, Kumar R, Choudhary DK.  2019.  Endophytic Bacteria in Plant Salt Stress Tolerance: Current and Future Prospects. Journal of Plant Growth Regulation. 38(2):650–668.
Hemalatha A, Prabhakara C, Mayor S.  2016.  Endocytosis of Wingless via a dynamin-independent pathway is necessary for signaling in Drosophila wing discs.. Proc Natl Acad Sci U S A.
Mirza ZA, Warekar P, Mohapatra PP, Raju D, Patil P, Dutta SK, Pal S.  2019.  "Endangered or an artifact of unsound taxonomy? Case of the critically endangered bush frog Philautus sanctisilvaticus Das and Chanda, 1997". Zootaxa. 4683(4):zootaxa.4683.4.6.
Natesh M, Taylor RW, Truelove NK, Hadly EA, Palumbi SR, Petrov DA, Ramakrishnan U.  2019.  Empowering conservation practice with efficient and economical genotyping from poor quality samples.. Methods Ecol Evol. 10(6):853-859.
Raghu P, Basak B, Krishnan H.  2021.  Emerging perspectives on multidomain phosphatidylinositol transfer proteins.. Biochim Biophys Acta Mol Cell Biol Lipids. :158984.
Raghu P.  2021.  Emerging cell biological functions of phosphatidylinositol 5 phosphate 4 kinase.. Curr Opin Cell Biol. 71:15-20.
Husain K, Rao M.  2017.  Emergent Structures in an Active Polar Fluid: Dynamics of Shape, Scattering, and Merger.. Phys Rev Lett. 118(7):078104.
Kumar M, Murali A, Subramaniam AGopal, Singh R, Thutupalli S.  2024.  Emergent dynamics due to chemo-hydrodynamic self-interactions in active polymers.. Nat Commun. 15(1):4903.
Kumar H, Udgaonkar JB.  2022.  Elongation of Fibrils Formed by a Tau Fragment is Inhibited by a Transient Dimeric Intermediate.. J Phys Chem B.
Urban L, De Niz M, Fernández-Chiappe F, Ebrahimi H, Han LKM, Mehta D, Mencia R, Mittal D, Ochola E, Quezada CPaz et al..  2022.  eLife's new model and its impact on science communication.. Elife. 11
Senthoorraja R, Subaharan K, Manjunath S, Pragadheesh VShanmugam, Bakthavatsalam N, Mohan MGounder, Senthil-Nathan S, Basavarajappa S.  2021.  Electrophysiological, behavioural and biochemical effect of Ocimum basilicum oil and its constituents methyl chavicol and linalool on Musca domestica L.. Environ Sci Pollut Res Int.
Brocke E, Bhalla US, Djurfeldt M, Kotaleski JHellgren, Hanke M.  2016.  Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations.. Front Comput Neurosci. 10:97.
Varma V, Iyengar SB, Sankaran M.  2016.  Effects of nutrient addition and soil drainage on germination of N-fixing and non-N-fixing tropical dry forest tree species . Plant Ecology. 217(1043–1054):1043–1054.
Varma V, Catherin AM, Sankaran M.  2018.  Effects of increased N and P availability on biomass allocation and root carbohydrate reserves differ between N-fixing and non-N-fixing savanna tree seedlings.. Ecol Evol. 8(16):8467-8476.
Hansen S, Krishna S, Semsey S, Svenningsen SLo.  2015.  Effects of Four Different Regulatory Mechanisms on the Dynamics of Gene Regulatory Cascades.. Sci Rep. 5:12186.
Menon T, Sridhar H, Shahabuddin G.  2019.   Effects of extractive use on forest birds in Western Himalayas: Role of local and landscape factors . FOREST ECOLOGY AND MANAGEMENT. 448:457-465.
Kalmankar NV, Gehi BRajendraku, Sowdhamini R.  2022.  Effects of a plant cyclotide on conformational dynamics and destabilization of β-amyloid fibrils through molecular dynamics simulations.. Front Mol Biosci. 9:986704.
Burrows M, Ghosh A, Yeshwanth HM, Dorosenko M, Sane SP.  2019.  Effectiveness and efficiency of two distinct mechanisms for take-off in a derbid planthopper insect.. J Exp Biol. 222(Pt 2)
Srinivasu BY, Arumugaperumal A, Mitra A, Muralidharan M, Das R, Mandal AKumar.  2021.  Effect of nanoparticle exposure in a living system: probed by quantification of Fetuin-B in plasma proteome and kidney tissue imaging using MALDI imaging mass spectrometry in a rat model. JOURNAL OF NANOPARTICLE RESEARCH. 23
Sreekar R, Srinivasan U, Mammides C, Chen J, Goodale UManage, Kotagama SWimalaband, Sidhu S, Goodale E.  2015.  The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India.. Sci Rep. 5:11569.
Mozaffer F, Cherian P, Krishna S, Wahl B, Menon GI.  2023.  Effect of hybrid immunity, school reopening, and the Omicron variant on trajectory of COVID-19 epidemic in India: A modelling study.. Lancet Reg Health Southeast Asia. :100095.
Thakur S, Neogi S.  2020.  Effect of doped ZnO nanoparticles on bacterial cell morphology and biochemical composition. APPLIED NANOSCIENCE.
Nataraj N, Hussain M, Ibrahim M, Hausmann AE, Rao S, Kaur S, Khazir J, Mir BAhmad, Olsson SB.  2022.  Effect of Altitude on Volatile Organic and Phenolic Compounds of Artemisia brevifolia Wall ex Dc. From the Western Himalayas. FRONTIERS IN ECOLOGY AND EVOLUTION. 10(864728)
Sowdhamini R, Mizuguchi K.  2017.  Editorial-Sequences and topology.. Curr Opin Struct Biol.
Spang A, Mayor S.  2018.  Editorial Overview: Membranes and organelles: rethinking membrane structure, function and compartments.. Curr Opin Cell Biol. 53:A1-A3.
Sane SP.  2020.  Editorial overview: Insect-inspired engineering: mechanisms, processes and algorithms.. Curr Opin Insect Sci. 42:vi-viii.
Nussinov R, Udgaonkar JB.  2016.  Editorial overview: Folding and binding: Dynamic conformational heterogeneity is pivotal to cell life.. Curr Opin Struct Biol. 36:iv-vi.
Rebehmed J, de Brevern AG, Sowdhamini R, Joseph APraveen.  2022.  Editorial: Advances in Molecular Docking and Structure-Based Modelling.. Front Mol Biosci. 9:839826.
Venkatesan V, Christopher ACrystal, Rhiel M, Azhagiri MKumar K, Babu P, Walavalkar K, Saravanan B, Andrieux G, Rangaraj S, Srinivasan S et al..  2023.  Editing the core region in HPFH deletions alters fetal and adult globin expression for treatment of β-hemoglobinopathies.. Mol Ther Nucleic Acids. 32:671-688.
Krishnadas M, Kumar AN, Comita LS.  2019.  Edge effects reduce α-diversity but not β-diversity during community assembly in a human-modified tropical forest.. Ecol Appl. 29(8):e01996.
Ghosh P, Joshi A, Guita N, Offmann B, Sowdhamini R.  2019.  EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins.. BMC Genomics. 20(1):403.
Marthews T.R, Nelaballi S., Ratnam J., Sankaran M..  2015.  Ecosystem monitoring and forest census studies in South Asia (Meeting Report). Current Science. 180:1779–1782.
Naik D, R. Rao SPrasad, Kunte K, Mustak MS.  2022.  Ecological monitoring and indicator taxa: butterfly communities in heterogeneous landscapes of the Western Ghats and Malabar coast, India. JOURNAL OF INSECT CONSERVATION.
Kaur K, Chandel M, Munikrishnappa VKT, Kumar P, Sahu BK, Ahamed M, Manjunath S, Gorantla M, Olsson S, Muthusamy E et al..  2024.  Ecofriendly agriculture pest control using pheromone packed programed nanovolcanoes framed by graphene oxide. CLEAN TECHNOLOGIES AND ENVIRONMENTAL POLICY.
Noordstra I, Hermoso MDíez, Schimmel L, Bonfim-Melo A, Currin-Ross D, Duong CNguyen, Kalappurakkal JMathew, Morris RG, Vestweber D, Mayor S et al..  2023.  An E-cadherin-actin clutch translates the mechanical force of cortical flow for cell-cell contact to inhibit epithelial cell locomotion.. Dev Cell.
Khan I, Agashe D, Rolff J.  2017.  Early-life inflammation, immune response and ageing.. Proc Biol Sci. 284(1850)
Rahman MMostafizur, Callaghan CK, Kerskens CM, Chattarji S, O'Mara SM.  2016.  Early hippocampal volume loss as a marker of eventual memory deficits caused by repeated stress.. Sci Rep. 6:29127.
Yousuf M, Iuliani I, Veetil RT, Seshasayee ASai Narain, Sclavi B, Lagomarsino MCosentino.  2020.  Early fate of exogenous promoters in E. coli.. Nucleic Acids Res.
Rajput V, Das R, Pramanik R, Nannaware K, Sushma Y, Taji N, Rajput V, Rajkhowa R, Pacharne P, Shah P et al..  2024.  Early Detection of KP.2 SARS-CoV-2 Variant using Wastewater-based Genomic Surveillance in Pune, Maharashtra, India.. J Travel Med.
Pal S, Dwivedi D, Pramanik T, Godbole G, Iwasato T, Jabaudon D, Bhalla US, Tole S.  2021.  An early cortical progenitor-specific mechanism regulates thalamocortical innervation.. J Neurosci.
Wang ET, J Taliaferro M, Lee J-A, Sudhakaran IP, Rossoll W, Gross C, Moss KR, Bassell GJ.  2016.  Dysregulation of mRNA Localization and Translation in Genetic Disease.. J Neurosci. 36(45):11418-11426.
Ali F, Seshasayee A.  2020.  Dynamics of Genetic Variation in Transcription Factors and Its Implications for the Evolution of Regulatory Networks in Bacteria. Nucleic Acids Res. 48(8):4100-4114.
Dhawale N, Mandre S, Venkadesan M.  2019.  Dynamics and stability of running on rough terrains.. R Soc Open Sci. 6(3):181729.
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Tomar A, Polygalov D, Chattarji S, McHugh TJ.  2015.  The dynamic impact of repeated stress on the hippocampal spatial map.. Hippocampus. 25(1):38-50.
Krishna S, Yim DGr, Lakshmanan V, Tirumalai V, Koh JLy, Park JEun, Cheong JKong, Low JLeng, Lim MJs, Sze SKwan et al..  2019.  Dynamic expression of tRNA-derived small RNAs define cellular states.. EMBO Rep. 20(7):e47789.
Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R.  2024.  Dynamic clustering of active rings. Phys. Rev. Research. 6(L012038 )
Sil P, Mateos N, Nath S, Buschow S, Manzo C, Suzuki KGN, Fujiwara T, Kusumi A, Garcia-Parajo MF, Mayor S.  2020.  Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane.. Mol Biol Cell. 31(7):561-579.
Kizhedathu A, Chhajed P, Yeramala L, Basu DSain, Mukherjee T, Vinothkumar KR, Guha A.  2021.  Duox generated reactive oxygen species activate ATR/Chk1 to induce G2 arrest in tracheoblasts.. Elife. 10
Park DEsther, Cheng J, Berrios C, Montero J, Cortés-Cros M, Ferretti S, Arora R, Tillgren ML, Gokhale PC, DeCaprio JA.  2019.  Dual inhibition of MDM2 and MDM4 in virus-positive Merkel cell carcinoma enhances the p53 response.. Proc Natl Acad Sci U S A. 116(3):1027-1032.
Richhariya S, Jayakumar S, Sukumar SKumar, Hasan G.  2018.  dSTIM- and Ral/Exocyst-Mediated Synaptic Release from Pupal Dopaminergic Neurons Sustains Flight.. eNeuro. 5(3)
Kalmankar NV, Pavalam M, Indrakumar S, Srinivasan N, Sowdhamini R.  2022.  DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.. Database (Oxford). 2022
Krishnan L, Barua D, Sankaran M.  2019.  Dry-forest tree species with large seeds and low stem specific density show greater survival under drought. JOURNAL OF TROPICAL ECOLOGY. 35(1):26-33.
Sen S, Goluguri RReddy, Udgaonkar JB.  2017.  A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Oli CBahadur, Panthi S, Subedi N, Ale G, Pant G, Khanal G, Bhattarai S.  2018.  Dry season diet composition of four-horned antelope in tropical dry deciduous forests, Nepal.. PeerJ. 6:e5102.
Sankaran M, Staver C.  2019.  Droughts and the ecological future of tropical savanna vegetation. JOURNAL OF ECOLOGY. 107(4):1531-1549.
Yadav S, Cockcroft S, Raghu P.  2016.  The Drosophila photoreceptor as a model system for studying signalling at membrane contact sites.. Biochem Soc Trans. 44(2):447-51.
Jayakumar S, Richhariya S, O Reddy V, Texada MJ, Hasan G.  2016.  Drosophila larval to pupal switch under nutrient stress requires IP3R/Ca(2+) signalling in glutamatergic interneurons.. Elife. 5
Jean-François F, Pratibha S, Baptiste R, Jean-Pierre F, Jérôme C, Deepa A, Claude E.  2025.  Is Drosophila Larval Competition Involved in Incipient Speciation? J Chem Ecol. 51(1):2.
Trisal S, Aranha M, Chodankar A, VijayRaghavan K, Ramaswami M.  2022.  A DROSOPHILA CIRCUIT FOR HABITUATION OVERRIDE.. J Neurosci.
Gunage RD, Dhanyasi N, Reichert H, VijayRaghavan K.  2017.  Drosophila adult muscle development and regeneration.. Semin Cell Dev Biol.

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