Journal Article
Shashidhara LS, Joshi A.
2023. Not teaching evolution is an injustice.. Science. 380(6652):1303.
Rodrigues C, Joy LR, Sachithanandan SP, Krishna S.
2019. Notch signalling in cervical cancer.. Exp Cell Res. :111682.
Saini N, Lakshminarayanan S, Kundu P, Sarin A.
2022. Notch1 Modulation of Cellular Calcium Regulates Mitochondrial Metabolism and Anti-Apoptotic Activity in T-Regulatory Cells.. Front Immunol. 13:832159.
Marcel N, Sarin A.
2016. Notch1 regulated autophagy controls survival and suppressor activity of activated murine T-regulatory cells.. Elife. 5
Naik S, MacFarlane M, Sarin A.
2015. Notch4 Signaling Confers Susceptibility to TRAIL-Induced Apoptosis in Breast Cancer Cells.. J Cell Biochem. 116(7):1371-80.
Mohapatra PP, Khandekar A, Dutta SK, Mahapatra C, Agarwal I.
2020. A novel, diminutive Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae from a sacred grove in Odisha, eastern India. ZOOTAXA. 4852(4):485-499.
Booker SA, Kind PC.
2021. Novel insights in plasticity and learning impairments in Fragile X Syndrome.. Brain Res Bull.
Ghosh A, Sharma S, Shinde D, Ramya V, Raghu P.
2019. A novel mass assay to measure phosphatidylinositol-5-phosphate from cells and tissues.. Biosci Rep. 39(10)
Chahwala FD, Singh D, R Kumar V, Rathore S, Yadav BK, Singh B, Singh AK.
2021. A novel monopartite begomovirus and satellites associated with yellow mosaic disease of Sida spp. in India.. Arch Virol. 166(1):299-302.
Negi H, Reddy PPurushotha, Vengayil V, Patole C, Laxman S, Das R.
2020. A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes.. Biochem J. 477(12):2193-2219.
Nair A, Shivaprasad PV.
2023. Novel regulators of mitochondrial genome integrity.. J Biosci. 48
Mudgal R, Sandhya S, Kumar G, Sowdhamini R, Chandra NR, Srinivasan N.
2015. NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.. Nucleic Acids Res. 43(Database issue):D300-5.
Ray S, Chintaluri C, Bhalla US, Wójcik DK.
2016. NSDF: Neuroscience Simulation Data Format.. Neuroinformatics. 14(2):147-67.
Venkatasubramani JPriya, Subramanyam P, Pal R, Reddy BK, Srinivasan DJeyalakshm, Chattarji S, Iossifov I, Klann E, Bhattacharya A.
2020. N-terminal variant Asp14Asn of the human p70 S6 Kinase 1 enhances translational signaling causing different effects in developing and mature neuronal cells.. Neurobiol Learn Mem. 171:107203.
Singh P, Seshasayee ASai Narain.
2017. Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.. Methods Mol Biol. 1624:85-97.
Varma V, Sankaran M.
2021. Nutrient deposition enhances post-fire survival in non-N-fixing savanna tree seedlings. JOURNAL OF VEGETATION SCIENCE. 32(2):e13020.
Ebeling A, Strauss AT, Adler PB, Arnillas CA, Barrio IC, Biederman LA, Borer ET, Bugalho MN, Caldeira MC, Cadotte MW et al..
2021. Nutrient enrichment increases invertebrate herbivory and pathogen damage in grasslands. JOURNAL OF ECOLOGY .
Borer ET, Harpole WS, Adler PB, Arnillas CA, Bugalho MN, Cadotte MW, Caldeira MC, Campana S, Dickman CR, Dickson TL et al..
2020. Nutrients cause grassland biomass to outpace herbivory.. Nat Commun. 11(1):6036.
Devi MR, Ummalyma SB, Brockmann A, Raina V, Rajashekar Y.
2023. Nutritional properties of giant water bug, a traditional edible insect species of North-East India.. Bioengineered. 14(1):2252669.
Bhatia S, Krishnamoorthy G, Dhar D, Udgaonkar JB.
2019. Observation of Continuous Contraction and a Metastable Misfolded State during the Collapse and Folding of a Small Protein.. J Mol Biol.
Surana P, Das R.
2016. Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR.. Protein Sci.
Sujkowski A, Ramesh D, Brockmann A, Wessells R.
2017. Octopamine Drives Endurance Exercise Adaptations in Drosophila.. Cell Rep. 21(7):1809-1823.
Saxena N, Natesan D, Sane SP.
2018. Odor source localization in complex visual environments by fruit flies.. J Exp Biol. 221(Pt 2)
Adurthi S, Kumar MM, Vinodkumar HS, Mukherjee G, Krishnamurthy H, K Acharya K, Bafna UD, Uma DK, Abhishekh B, Krishna S et al..
2017. Oestrogen Receptor-α binds the FOXP3 promoter and modulates regulatory T-cell function in human cervical cancer.. Sci Rep. 7(1):17289.
Gupta P, Albeanu DF, Bhalla US.
2015. Olfactory bulb coding of odors, mixtures and sniffs is a linear sum of odor time profiles.. Nat Neurosci. 18(2):272-81.
Parchure A, Vyas N, Ferguson C, Parton RG, Mayor S.
2015. Oligomerization and endocytosis of Hedgehog is necessary for its efficient exovesicular secretion.. Mol Biol Cell. 26(25):4700-17.
Joshi S, Agashe D.
2020. Ontogenic colour change, survival, and mating in the damselfly Agriocnemis pygmaea Rambur (Insecta: Odonata). ECOLOGICAL ENTOMOLOGY.
Bawa KS, Nawn N, Chellam R, Krishnaswamy J, Mathur V, Olsson SB, Pandit N, Rajagopal P, Sankaran M, R Shaanker U et al..
2020. Opinion: Envisioning a biodiversity science for sustaining human well-being.. Proc Natl Acad Sci U S A.
Warrit N, Ascher J, Basu P, Belavadi V, Brockmann A, al et.
2023. Opportunities and challenges in Asian bee research and conservation. BIOLOGICAL CONSERVATION . 285:110173.
Srivathsa A, Majgaonkar I, Sharma S, Singh P, Punjabi GA, Chawla MM, Banerjee A.
2020. Opportunities for prioritizing and expanding conservation enterprise in India using a guild of carnivores as flagships. ENVIRONMENTAL RESEARCH LETTERS. 15(6)
Arnillas CAlberto, Borer E, Seabloom E, Alberti J, Báez S, Bakker J, Boughton E, Buckley Y, Bugalho MNuno, Donohue I et al..
2021. Opposing community assembly patterns for dominant and jonnondominant plant species in herbaceous ecosystems globally. ECOLOGY AND EVOLUTION .
Arnillas CAlberto, Borer ET, Seabloom EW, Alberti J, Báez S, Bakker JD, Boughton EH, Buckley YM, Bugalho MNuno, Donohue I et al..
2021. Opposing community assembly patterns for dominant and nondominant plant species in herbaceous ecosystems globally.. Ecol Evol. 11(24):17744-17761.
Dhall JKaur, Kasturacharya N, Pandit A, Cp L.
2023. Optimized protocol for assay for transposase-accessible chromatin by sequencing (ATAC-seq) from Drosophila melanogaster brain tissue.. STAR Protoc. 4(2):102153.
Nair J, Sanmugam PV, Karpe SD, Ramakrishnan U, Olsson SB.
2018. An optimized protocol for large-scale in situ sampling and analysis of volatile organic compounds. Ecology and Evolution. 8(11):59242-5935.
Nair J, Pragadheesh VS, Karpe SD, Ramakrishnan U, Olsson SB.
2018. An optimized protocol for large‐scale in situ sampling and analysis of volatile organic compounds . Ecology and Evolution. 8(11):5924-5936.
Farooq U, Notani D.
2021. Optimized protocol to create deletion in adherent cell lines using CRISPR/Cas9 system.. STAR Protoc. 2(4):100857.
Arvindekar S, Pathak AS, Majila K, Viswanath S.
2024. Optimizing representations for integrative structural modeling using Bayesian model selection.. Bioinformatics. 40(3)
Cherian P, Krishna S, Menon GI.
2021. Optimizing testing for COVID-19 in India.. PLoS Comput Biol. 17(7):e1009126.
Mitra R, Richhariya S, Hasan G.
2024. Orai-mediated calcium entry determines activity of central dopaminergic neurons by regulation of gene expression.. Elife. 12
Thattai M.
2017. Organelle acidification: an ancient cellular leak detector.. BMC Biol. 15(1):51.
Ramakrishnan N, Ipsen JH, Rao M, Kumar PBSunil.
2015. Organelle morphogenesis by active membrane remodeling.. Soft Matter. 11(12):2387-93.
Reynolds AM, Reynolds DR, Sane SP, Hu G, Chapman JW.
2016. Orientation in high-flying migrant insects in relation to flows: mechanisms and strategies.. Philos Trans R Soc Lond B Biol Sci. 371(1704)
Jethva PN, Udgaonkar JB.
2018. The Osmolyte TMAO Modulates Protein Folding Cooperativity by Altering Global Protein Stability.. Biochemistry.
Pörtner H-O, Scholes RJ, Arneth A, Barnes DKA, Burrows MT, Diamond SE, Duarte CM, Kiessling W, Leadley P, Managi S et al..
2023. Overcoming the coupled climate and biodiversity crises and their societal impacts.. Science. 380(6642):eabl4881.
Ghosh E, Sasidharan A, Ode PJ, Venkatesan R.
2022. Oviposition Preference and Performance of a Specialist Herbivore Is Modulated by Natural Enemies, Larval Odors, and Immune Status.. J Chem Ecol.
Yadahalli S, Gosavi S.
2017. Packing energetics determine the folding routes of the RNase-H proteins.. Phys Chem Chem Phys.
Pincha N, Hajam EYousaf, Badarinath K, Batta SPrakash Ra, Masudi T, Dey R, Andreasen P, Kawakami T, Samuel R, George R et al..
2018. PAI1 mediates fibroblast-mast cell interactions in skin fibrosis.. J Clin Invest.
Consortium ICGC/TCGAPan-Cancer, Sabarinathan R, al et.
2020. Pan-cancer Analysis of Whole Genomes. Nature. 578(7793):82-93.
Moulick R, Das R, Udgaonkar JB.
2015. Partially Unfolded Forms of the Prion Protein Populated under Misfolding-promoting Conditions: CHARACTERIZATION BY HYDROGEN EXCHANGE MASS SPECTROMETRY AND NMR.. J Biol Chem. 290(42):25227-40.
Gandhimathi A, Ghosh P, Hariharaputran S, Mathew OK, Sowdhamini R.
2016. PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.. Nucleic Acids Res. 44(D1):D410-4.
Ghosh P, Bhattacharyya T, Mathew OK, Sowdhamini R.
2019. PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.. Database (Oxford). 2019
Bhattacharyya T, Nayak S, Goswami S, Gadiyaram V, Mathew OK, Sowdhamini R.
2022. PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe.. Database (Oxford). 2022
Khan I, Prakash A, Agashe D.
2019. Pathogen susceptibility and fitness costs explain variation in immune priming across natural populations of flour beetles.. J Anim Ecol.
Sabareesan AThody, Singh J, Roy S, Udgaonkar JB, Mathew MK.
2016. The Pathogenic A116V Mutation Enhances Ion-Selective Channel Formation by Prion Protein in Membranes.. Biophys J. 110(8):1766-76.
Singh J, Udgaonkar JB.
2016. The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Sabareesan AT, Udgaonkar JB.
2016. Pathogenic mutations within the disordered palindromic region of the prion protein induce structure therein and accelerate the formation of misfolded oligomers.. J Mol Biol.
Mayor S, Pagano RE.
2007. Pathways of clathrin-independent endocytosis.. Nat Rev Mol Cell Biol. 8(8):603-12.
Das AA, Ratnam J, Jathanna D.
2023. Patterns and consequences of invasion of tropical montane forests by Cestrum aurantiacum Lindl. in the Western Ghats. FRONTIERS IN ECOLOGY AND EVOLUTION .
Jobin V, Das A, Harikrishnan CP, Chanda R, Lawrence S, Robin VV.
2023. Patterns of understory invasion in invasive timber stands of a tropical sky island.. Ecol Evol. 13(4):e9995.
Varma V., Ratnam J., Viswanathan V., Osuri A.M, Biesmeijer J.C, Madhusudan M.D, Sankaran M..
2015. Perceptions of priority issues in the conservation of biodiversity and ecosystems in India. Biological Conservation . 187:201-211.
Ghosh E, Varshney R, Venkatesan R.
2021. Performance of larval parasitoid, Bracon brevicornis on two Spodoptera hosts: implication in bio-control of Spodoptera frugiperda. JOURNAL OF PEST SCIENCE.
Murata S, Brockmann A, Tanimura T.
2017. Pharyngeal stimulation with sugar triggers local searching behavior in Drosophila.. J Exp Biol.
Das A, Polley A, Rao M.
2016. Phase Segregation of Passive Advective Particles in an Active Medium.. Phys Rev Lett. 116(6):068306.
Bangal P, Sridhar H, Shanker K.
2021. Phenotypic Clumping Decreases With Flock Richness in Mixed-Species Bird Flocks. FRONTIERS IN ECOLOGY AND EVOLUTION. (537816)
Sanjenbam P, Buddidathi R, Venkatesan R, Shivaprasad PV, Agashe D.
2020. Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India.. PLoS One. 15(2):e0228550.
Saha S, Prakash V, Halder S, Chakraborty K, Krishnan Y.
2015. A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells.. Nat Nanotechnol. 10(7):645-51.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.
2019. Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Kamalesh K, Trivedi D, Toscano S, Sharma S, Kolay S, Raghu P.
2017. Phosphatidylinositol 5-phosphate 4-kinase regulates early endosomal dynamics during clathrin-mediated endocytosis.. J Cell Sci.
Balakrishnan SS, Basu U, Raghu P.
2015. Phosphoinositide signalling in Drosophila.. Biochim Biophys Acta. 1851(6):770-84.
Padinjat R, Joseph A, Krishnan H, Singh P, Saha S.
2019. Phosphoinositides: Regulators of Nervous System Function in Health and Disease. FRONTIERS IN MOLECULAR NEUROSCIENCE. 12
Thakur R, Panda A, Coessens E, Raj N, Yadav S, Balakrishnan S, Zhang Q, Georgiev P, Basak B, Pasricha R et al..
2016. Phospholipase D activity couples plasma membrane endocytosis with retromer dependent recycling.. Elife. 5
Cockcroft S, Raghu P.
2018. Phospholipid transport protein function at organelle contact sites.. Curr Opin Cell Biol. 53:52-60.
Sidhanth C, Bindhya S, Krishnapriya S, Manasa P, Shabna A, Alifia J, Patole C, Kumar V, Garg M, Ganesan TS.
2022. Phosphoproteome of signaling by ErbB2 in ovarian cancer cells.. Biochim Biophys Acta Proteins Proteom. :140768.
Kim S, Kalappurakkal JM, Mayor S, Rosen MK.
2019. Phosphorylation of Nephrin induces phase separated domains that move through actomyosin contraction.. Mol Biol Cell. :mbcE18120823.
Nagpal S, Nair DT.
2021. The PHP domain of PolX from Staphylococcus aureus aids high fidelity DNA synthesis through the removal of misincorporated deoxyribo-, ribo- and oxidized nucleotides.. Sci Rep. 11(1):4178.
Maddison WP, Beattie I, Marathe K, Ng PYC, Kanesharatnam N, Benjamin SP, Kunte K.
2020. A phylogenetic and taxonomic review of baviine jumping spiders (Araneae, Salticidae, Baviini).. Zookeys. 1004:27-97.
Hime PM, Lemmon AR, Lemmon ECMoriarty, Prendini E, Brown JM, Thomson RC, Kratovil JD, Noonan BP, R Pyron A, Peloso PLV et al..
2021. Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life.. Syst Biol. 70(1):49-66.
Lajmi A, Bansal R, Giri VB, Karanth P.
2019. Phylogeny and biogeography of the endemic Hemidactylus geckos of the Indian subregion suggest multiple dispersals from Peninsular India to Sri Lanka. Zoological Journal of the Linnean Society. 186(186):286–301.
Agarwal I, Ramakrishnan U.
2017. A phylogeny of open-habitat lizards (Squamata: Lacertidae: Ophisops) supports the antiquity of Indian grassy biomes. JOURNAL OF BIOGEOGRAPHY . 44(9):2021-2032.
Yang X, Heinemann M, Howard J, Huber G, Iyer-Biswas S, Le Treut G, Lynch M, Montooth KL, Needleman DJ, Pigolotti S et al..
2021. Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.. Proc Natl Acad Sci U S A. 118(26)
Kosmalska AJoanna, Casares L, Elosegui-Artola A, Thottacherry JJose, Moreno-Vicente R, González-Tarragó V, del Pozo MÁngel, Mayor S, Arroyo M, Navajas D et al..
2015. Physical principles of membrane remodelling during cell mechanoadaptation.. Nat Commun. 6:7292.
Vijayakrishnan S, Kumar MAnanda, Umapathy G, Kumar V, Sinha A.
2018. Physiological stress responses in wild Asian elephants Elephas maximus in a human-dominated landscape in the Western Ghats, southern India.. Gen Comp Endocrinol. 266:150-156.
Dwivedi D, Bhalla US.
2021. Physiology and Therapeutic Potential of SK, H, and M Medium AfterHyperPolarization Ion Channels.. Front Mol Neurosci. 14:658435.
Gowda A, C ST, Anil VS, Raghavan S.
2024. Phytosynthesis of silver nanoparticles using aqueous sandalwood (Santalum album L.) leaf extract: Divergent effects of SW-AgNPs on proliferating plant and cancer cells.. PLoS One. 19(4):e0300115.
Ghosh A, Venugopal A, Shinde D, Sharma S, Krishnan M, Mathre S, Krishnan H, Saha S, Raghu P.
2023. PI3P-dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase.. Life Sci Alliance. 6(9)
Basu U, Balakrishnan SS, Janardan V, Raghu P.
2020. A PI4KIIIα protein complex is required for cell viability during Drosophila wing development.. Dev Biol. 462(2):208-222.
Mathew OKaleeckal, Sowdhamini R.
2016. PIMA: Protein-Protein interactions in Macromolecular Assembly - a web server for its Analysis and Visualization.. Bioinformation. 12(1):9-11.
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2016. PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies.. Bioinform Biol Insights. 10:105-9.
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2019. Plant Antiviral Immunity Against Geminiviruses and Viral Counter-Defense for Survival.. Front Microbiol. 10:1460.
G Sundar VHari, Madhu A, Archana A, Shivaprasad PV.
2024. Plant histone variants at the nexus of chromatin readouts, stress and development.. Biochim Biophys Acta Gen Subj. 1868(2):130539.
G VHari Sunda, Swetha C, Basu D, Pachamuthu K, Raju S, Chakraborty T, Mosher RA, Shivaprasad PV.
2023. Plant polymerase IV sensitizes chromatin through histone modifications to preclude spread of silencing into protein-coding domains.. Genome Res.
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2015. Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
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2019. Plant Volatiles Modulate Immune Responses of Spodoptera litura.. J Chem Ecol.
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2020. Plant-virus-insect tritrophic interactions: insights into the functions of geminivirus virion-sense strand genes.. Proc Biol Sci. 287(1936):20201846.
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2020. Plasmodium vivax liver stage assay platforms using Indian clinical isolates.. Malar J. 19(1):214.
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2016. Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.. J Biol Chem. 291(3):1235-42.
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2024. Plasticity of the proteasome-targeting signal Fat10 enhances substrate degradation.. Elife. 13
Chandrasegaran K, Singh A, Laha M, Quader S.
2018. Playing it safe? Behavioural responses of mosquito larvae encountering a fish predator ETHOLOGY ECOLOGY & EVOLUTION. 30(1):70-87.
Nabais C, Pessoa D, de-Carvalho J, van Zanten T, Duarte P, Mayor S, Carneiro J, Telley IA, Bettencourt-Dias M.
2021. Plk4 triggers autonomous de novo centriole biogenesis and maturation.. J Cell Biol. 220(5)